HHsearch alignment for GI: 254780445 and conserved domain: cd07956
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=96.52 E-value=0.013 Score=36.22 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH--------HHHHHCCCCCCCCCCCCC--CCCCCCCHHHH-HHHHHHH
Q ss_conf 136757887888717876655443102567776--------400000110000012244--44567310111-2788875
Q gi|254780445|r 649 SESGADVLRYWAVNSDYHDDQRLGKNIIQTNID--------TYRKLRNTIRWMLGMLAH--DTGNEPSLADM-PALEQLM 717 (963)
Q Consensus 649 ~~yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~--------~~~kl~Nt~rf~l~~l~~--~~~~~~~~~~l-~~~Dkwi 717 (963)
T Consensus 1 e~Ig~~Airy~~L~~~~~~~~~FD~d~~~~~~gnt~~YiQYa~aR~~SIl~----k~~~~~~~~~~~~~~~l~~~~e~~L 76 (156)
T cd07956 1 EEVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILR----KAGETIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCCEEHHHHHHHHHHHHH----HCCCCCCCCCCCCHHCCCCHHHHHH
T ss_conf 964235788899863899984552999862368985112489999999999----7245453322254200499899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4368999999889876540122668899878630240010102012227899-808999999999999999999970
Q gi|254780445|r 718 LHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSP-SSLKRLSSIAVIRILCRHLIIWIA 793 (963)
Q Consensus 718 Lskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~-~s~~R~s~~~~L~~il~~l~~lLa 793 (963)
T Consensus 77 i~~l~~fp~vl~~a~~~~~P~~l~~YL~~La~-~F~~fY~~-~~--Ii~~~~~~~~~RL~L~~a~~~vL~~gL~lLG 149 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAH-AFSKFYNA-CP--VLGAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHH-CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99996572899999997070699999999999-99999974-98--8789889999999999999999999865119