HHsearch alignment for GI: 254780445 and conserved domain: cd07959
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.73 E-value=1.3e-17 Score=140.14 Aligned_cols=116 Identities=20% Similarity=0.348 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31025677764000001100000122444456731011127888754368999999889876540122668899878630
Q gi|254780445|r 672 GKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAE 751 (963)
Q Consensus 672 ~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~d 751 (963)
T Consensus 2 ~~~~a~~~~~~L~~~~~~~~---e~~~----~~~~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~ 74 (117)
T cd07959 2 REEEANSAILRLERFYELAE---ELIE----TEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQND 74 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHH----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 18789999999999999999---9986----2577888977689999999999999999999878878999999999999
Q ss_pred CCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 24001010201222789980899999999999999999997000448999999863
Q gi|254780445|r 752 LSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 752 LS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l 807 (963)
T Consensus 75 ~-~~Y~~~~~~~------------~~~~~l~~~l~~~~~lLaP~~PhiaEEiW~~l 117 (117)
T cd07959 75 L-DWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H-HHHHHHHCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9-9999984554------------14999999999999998473348699998639