HHsearch alignment for GI: 254780445 and conserved domain: cd07961

>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00  E-value=2e-37  Score=277.24  Aligned_cols=174  Identities=20%  Similarity=0.310  Sum_probs=151.6

Q ss_pred             CCCHHHHH-HHHHHHHHCCCCCCCCCCCC--CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43102567-77640000011000001224--44456--731011127888754368999999889876540122668899
Q gi|254780445|r  671 LGKNIIQT-NIDTYRKLRNTIRWMLGMLA--HDTGN--EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLT  745 (963)
Q Consensus       671 ~~~~~l~~-~~~~~~kl~Nt~rf~l~~l~--~~~~~--~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~  745 (963)
T Consensus         1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~   80 (183)
T cd07961           1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL   80 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             98889999983589999989999996221017995434556010558899999999999999999998011999999999


Q ss_pred             HHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC----CCCCEEECCCCC
Q ss_conf             8786302400101020122278998089999999999999999999700044899999986388----677345335889
Q gi|254780445|r  746 NFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNP----EAVSVHLELFPI  821 (963)
Q Consensus       746 ~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~----~~~SI~~~~wP~  821 (963)
T Consensus        81 ~F~-~~l~~wYie~~K~rl~~~~~-~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P~  158 (183)
T cd07961          81 EFI-DELTNWYIRRNRKRFWGEEG-DDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPE  158 (183)
T ss_pred             HHH-HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCC
T ss_conf             999-99989999998899970566-3888999999999999999975764024399999986024689888032006899


Q ss_pred             CCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9835689899999999999999999
Q gi|254780445|r  822 IPLEWQNACLSKKWGKILQLRKVVT  846 (963)
Q Consensus       822 ~~~~~~d~~le~~~~~l~~ir~~V~  846 (963)
T Consensus       159 ~~~~~~d~~le~~~~~l~~ii~~iR  183 (183)
T cd07961         159 VDESLIDEELEEAMELVREIVELGR  183 (183)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             8810269999999999999999759