HHsearch alignment for GI: 254780445 and conserved domain: cd07961
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00 E-value=2e-37 Score=277.24 Aligned_cols=174 Identities=20% Similarity=0.310 Sum_probs=151.6
Q ss_pred CCCHHHHH-HHHHHHHHCCCCCCCCCCCC--CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43102567-77640000011000001224--44456--731011127888754368999999889876540122668899
Q gi|254780445|r 671 LGKNIIQT-NIDTYRKLRNTIRWMLGMLA--HDTGN--EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLT 745 (963)
Q Consensus 671 ~~~~~l~~-~~~~~~kl~Nt~rf~l~~l~--~~~~~--~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~ 745 (963)
T Consensus 1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98889999983589999989999996221017995434556010558899999999999999999998011999999999
Q ss_pred HHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC----CCCCEEECCCCC
Q ss_conf 8786302400101020122278998089999999999999999999700044899999986388----677345335889
Q gi|254780445|r 746 NFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNP----EAVSVHLELFPI 821 (963)
Q Consensus 746 ~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~----~~~SI~~~~wP~ 821 (963)
T Consensus 81 ~F~-~~l~~wYie~~K~rl~~~~~-~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P~ 158 (183)
T cd07961 81 EFI-DELTNWYIRRNRKRFWGEEG-DDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPE 158 (183)
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCC
T ss_conf 999-99989999998899970566-3888999999999999999975764024399999986024689888032006899
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9835689899999999999999999
Q gi|254780445|r 822 IPLEWQNACLSKKWGKILQLRKVVT 846 (963)
Q Consensus 822 ~~~~~~d~~le~~~~~l~~ir~~V~ 846 (963)
T Consensus 159 ~~~~~~d~~le~~~~~l~~ii~~iR 183 (183)
T cd07961 159 VDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8810269999999999999999759