HHsearch alignment for GI: 254780445 and conserved domain: cd07962
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.97 E-value=1.2e-30 Score=230.42 Aligned_cols=135 Identities=22% Similarity=0.420 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43102567776400000110000012244445673101112788875436899999988987654012266889987863
Q gi|254780445|r 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNA 750 (963)
Q Consensus 671 ~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~ 750 (963)
T Consensus 1 ~~e~~i~~~~rf~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~Dkwil~~l~~~~~~i~~~~~~~~f~~a~~~l~~F~~~ 80 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98999899999999999999999875453687546610077999999999999999999999865899999999999899
Q ss_pred HCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 024001010201222789980899999999999999999997000448999999863
Q gi|254780445|r 751 ELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 751 dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l 807 (963)
T Consensus 81 ~ls~~Yie~~K~rl~~~--~~~~~~~~~~~l~~~l~~~l~llaP~~PfitEeiw~~l 135 (135)
T cd07962 81 DFCDWYLELVKPRLYGE--DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99899999979987299--78999999999999999999999878799999998439