Query gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 963
No_of_seqs 256 out of 4783
Neff 7.2
Searched_HMMs 39220
Date Sun May 29 20:51:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780445.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05743 ileS isoleucyl-tRNA s 100.0 0 0 2220.1 68.7 901 7-954 2-910 (910)
2 PRK13804 ileS isoleucyl-tRNA s 100.0 0 0 2209.9 73.0 953 3-959 3-963 (966)
3 COG0060 IleS Isoleucyl-tRNA sy 100.0 0 0 2185.0 55.7 915 7-956 1-933 (933)
4 TIGR00392 ileS isoleucyl-tRNA 100.0 0 0 2092.3 48.8 833 19-869 1-937 (938)
5 PRK06039 ileS isoleucyl-tRNA s 100.0 0 0 1871.0 60.2 837 20-899 1-865 (1042)
6 KOG0433 consensus 100.0 0 0 1722.8 44.2 893 6-955 14-935 (937)
7 PRK05729 valS valyl-tRNA synth 100.0 0 0 1701.6 56.9 775 19-900 2-787 (877)
8 TIGR00422 valS valyl-tRNA synt 100.0 0 0 1674.5 51.5 810 20-917 1-914 (970)
9 PRK13208 valS valyl-tRNA synth 100.0 0 0 1662.7 54.5 792 17-902 2-802 (809)
10 COG0525 ValS Valyl-tRNA synthe 100.0 0 0 1527.1 54.2 771 21-898 2-784 (877)
11 KOG0434 consensus 100.0 0 0 1429.1 39.5 844 21-899 5-883 (1070)
12 pfam00133 tRNA-synt_1 tRNA syn 100.0 0 0 1411.7 32.4 598 32-672 1-606 (606)
13 PRK12300 leuS leucyl-tRNA synt 100.0 0 0 1311.0 49.3 724 69-873 1-782 (888)
14 PRK00390 leuS leucyl-tRNA synt 100.0 0 0 1291.4 27.4 649 21-828 2-758 (822)
15 KOG0432 consensus 100.0 0 0 1188.4 44.9 784 12-900 39-901 (995)
16 TIGR00396 leuS_bact leucyl-tRN 100.0 0 0 1196.3 17.8 695 25-845 2-864 (916)
17 TIGR00395 leuS_arch leucyl-tRN 100.0 0 0 1113.9 34.0 800 28-872 2-975 (1109)
18 COG0495 LeuS Leucyl-tRNA synth 100.0 0 0 1028.0 35.6 682 22-829 3-752 (814)
19 KOG0435 consensus 100.0 0 0 891.2 29.4 661 16-827 22-799 (876)
20 KOG0437 consensus 100.0 0 0 738.4 28.7 747 22-824 10-884 (1080)
21 cd00817 ValRS_core This is the 100.0 0 0 700.8 25.8 355 54-671 1-363 (363)
22 PRK12268 methionyl-tRNA synthe 100.0 0 0 690.3 28.2 494 54-809 3-511 (558)
23 cd00818 IleRS_core This is the 100.0 0 0 680.3 24.4 331 54-671 1-339 (339)
24 PRK11893 methionyl-tRNA synthe 100.0 0 0 647.6 28.6 461 54-811 1-479 (512)
25 PRK00133 metG methionyl-tRNA s 100.0 0 0 608.0 24.9 478 54-809 2-503 (666)
26 PRK12267 methionyl-tRNA synthe 100.0 0 0 598.3 25.4 458 53-810 3-479 (644)
27 cd00668 Ile_Leu_Val_MetRS_core 100.0 0 0 569.6 22.0 324 55-671 1-334 (334)
28 pfam09334 tRNA-synt_1g tRNA sy 100.0 0 0 566.3 19.8 368 56-691 1-386 (388)
29 cd00812 LeuRS_core This is the 100.0 0 0 517.2 23.0 351 55-671 1-376 (376)
30 COG0143 MetG Methionyl-tRNA sy 100.0 0 0 502.4 32.2 484 53-810 4-513 (558)
31 TIGR00398 metG methionyl-tRNA 100.0 0 0 503.0 23.6 482 63-812 8-543 (573)
32 KOG0436 consensus 100.0 0 0 355.4 22.8 461 53-809 38-527 (578)
33 cd00814 MetRS_core This is the 100.0 0 0 355.3 20.0 132 55-204 1-132 (319)
34 cd07960 Anticodon_Ia_Ile_BEm A 100.0 5.2E-43 0 315.9 14.8 176 671-846 1-180 (180)
35 cd07961 Anticodon_Ia_Ile_ABEc 100.0 2E-37 5.2E-42 277.2 13.5 174 671-846 1-183 (183)
36 pfam01406 tRNA-synt_1e tRNA sy 100.0 2.6E-33 6.6E-38 248.8 14.5 120 49-190 5-125 (301)
37 cd07962 Anticodon_Ia_Val Antic 100.0 1.2E-30 3E-35 230.4 10.4 135 671-807 1-135 (135)
38 KOG1247 consensus 100.0 1.8E-29 4.6E-34 222.2 16.3 481 63-816 23-526 (567)
39 pfam08264 Anticodon_1 Anticodo 100.0 6.8E-29 1.7E-33 218.2 14.9 147 714-867 1-147 (148)
40 PRK00260 cysS cysteinyl-tRNA s 99.9 5.6E-25 1.4E-29 191.1 20.4 139 587-749 221-364 (460)
41 COG0215 CysS Cysteinyl-tRNA sy 99.9 5.3E-21 1.4E-25 163.5 13.7 144 587-750 222-370 (464)
42 cd07375 Anticodon_Ia_like Anti 99.9 8.5E-22 2.2E-26 169.0 9.0 117 673-796 1-117 (117)
43 TIGR03447 mycothiol_MshC cyste 99.9 1.9E-20 4.8E-25 159.7 14.1 137 587-750 242-384 (411)
44 PRK12418 cysteinyl-tRNA synthe 99.8 1.2E-19 3.1E-24 154.1 16.3 137 587-750 215-357 (384)
45 KOG2007 consensus 99.8 3.5E-17 8.9E-22 137.1 18.6 167 588-764 260-431 (586)
46 cd07958 Anticodon_Ia_Leu_BEm A 99.7 6.1E-18 1.5E-22 142.4 9.0 117 671-807 1-117 (117)
47 cd00802 class_I_aaRS_core Clas 99.7 2.5E-18 6.3E-23 145.1 5.6 71 59-150 3-73 (142)
48 cd07959 Anticodon_Ia_Leu_AEc A 99.7 1.3E-17 3.2E-22 140.1 8.9 116 672-807 2-117 (117)
49 TIGR00435 cysS cysteinyl-tRNA 99.7 4.1E-16 1E-20 129.7 8.0 161 585-750 365-535 (660)
50 cd00672 CysRS_core This is the 99.2 7E-12 1.8E-16 100.4 3.4 82 586-672 128-213 (213)
51 cd07957 Anticodon_Ia_Met Antic 99.2 2E-10 5.1E-15 90.3 10.2 101 702-807 26-129 (129)
52 PRK01611 argS arginyl-tRNA syn 99.1 6.6E-10 1.7E-14 86.7 10.1 195 589-793 331-563 (570)
53 TIGR00456 argS arginyl-tRNA sy 99.0 3.8E-09 9.6E-14 81.5 10.4 195 589-793 353-593 (600)
54 PRK12451 arginyl-tRNA syntheta 99.0 7E-09 1.8E-13 79.6 11.4 193 588-792 327-554 (562)
55 COG0018 ArgS Arginyl-tRNA synt 99.0 6.4E-09 1.6E-13 79.9 11.0 194 589-793 338-570 (577)
56 COG0018 ArgS Arginyl-tRNA synt 98.9 7E-08 1.8E-12 72.7 11.7 132 62-197 125-297 (577)
57 PRK12451 arginyl-tRNA syntheta 98.8 7.4E-08 1.9E-12 72.5 10.0 126 62-191 121-282 (562)
58 cd00674 LysRS_core_class_I Thi 98.8 1.1E-08 2.7E-13 78.4 5.3 103 48-158 13-123 (354)
59 TIGR00456 argS arginyl-tRNA sy 98.8 3.5E-08 9E-13 74.7 7.7 133 63-200 127-310 (600)
60 PRK01611 argS arginyl-tRNA syn 98.8 1.6E-07 4.1E-12 70.2 10.9 130 57-190 120-283 (570)
61 pfam00750 tRNA-synt_1d tRNA sy 98.7 4.7E-08 1.2E-12 73.9 7.9 82 589-672 234-344 (345)
62 PRK00750 lysK lysyl-tRNA synth 98.7 4E-07 1E-11 67.5 11.1 118 34-158 10-136 (513)
63 pfam01921 tRNA-synt_1f tRNA sy 98.7 4.2E-08 1.1E-12 74.3 5.4 105 48-158 13-125 (355)
64 cd00671 ArgRS_core This is the 98.6 4E-07 1E-11 67.4 8.5 47 63-109 9-55 (267)
65 pfam00750 tRNA-synt_1d tRNA sy 98.4 4.4E-07 1.1E-11 67.2 4.2 132 54-190 19-186 (345)
66 COG1384 LysS Lysyl-tRNA synthe 98.1 2.5E-06 6.4E-11 61.9 2.7 99 54-158 19-125 (521)
67 cd00672 CysRS_core This is the 98.0 1.4E-05 3.6E-10 56.8 5.3 120 59-227 25-145 (213)
68 PRK04156 gltX glutamyl-tRNA sy 97.9 5.9E-05 1.5E-09 52.4 7.3 95 60-190 104-198 (566)
69 PRK12410 glutamyl-tRNA synthet 97.9 0.00011 2.7E-09 50.7 8.4 89 62-189 5-94 (433)
70 cd00807 Gln_GluRS_non_core Glu 97.8 6.4E-05 1.6E-09 52.2 6.1 89 61-187 6-94 (238)
71 TIGR00435 cysS cysteinyl-tRNA 97.8 8E-05 2E-09 51.5 6.4 38 63-100 30-68 (660)
72 PRK12558 glutamyl-tRNA synthet 97.7 0.00014 3.6E-09 49.8 7.3 90 62-189 8-97 (461)
73 pfam01921 tRNA-synt_1f tRNA sy 97.7 0.00033 8.4E-09 47.3 8.7 99 586-686 230-331 (355)
74 TIGR00396 leuS_bact leucyl-tRN 97.7 1.8E-05 4.6E-10 56.0 1.8 70 412-489 156-230 (916)
75 PRK13354 tyrosyl-tRNA syntheta 97.7 2.9E-05 7.3E-10 54.6 2.8 55 586-646 185-243 (405)
76 pfam00749 tRNA-synt_1c tRNA sy 97.7 0.00021 5.5E-09 48.5 7.2 91 62-190 7-98 (314)
77 cd00674 LysRS_core_class_I Thi 97.6 0.00078 2E-08 44.7 9.6 99 586-686 227-329 (354)
78 PRK01406 gltX glutamyl-tRNA sy 97.6 0.00031 7.9E-09 47.4 7.1 88 63-189 9-98 (467)
79 PRK00574 gltX glutamyl-tRNA sy 97.6 0.00014 3.7E-09 49.7 5.2 91 62-190 10-109 (489)
80 COG0008 GlnS Glutamyl- and glu 97.5 0.00028 7E-09 47.8 6.4 89 61-189 14-105 (472)
81 PRK05347 glutaminyl-tRNA synth 97.5 0.00041 1E-08 46.6 6.9 94 57-188 30-124 (556)
82 pfam06827 zf-FPG_IleRS Zinc fi 97.5 1.9E-05 5E-10 55.8 -0.2 30 922-951 1-30 (30)
83 PRK00750 lysK lysyl-tRNA synth 97.5 0.00058 1.5E-08 45.5 7.2 95 586-684 241-336 (513)
84 cd00805 TyrRS_core Tyrosinyl-t 97.4 5E-05 1.3E-09 52.9 1.1 54 584-642 148-203 (268)
85 PRK05710 glutamyl-Q tRNA(Asp) 97.4 0.00075 1.9E-08 44.8 7.0 89 62-187 10-98 (299)
86 cd00418 GlxRS_core Glutamyl-tR 97.3 0.001 2.6E-08 43.8 7.2 85 62-184 7-92 (223)
87 PRK12284 tryptophanyl-tRNA syn 97.2 9.7E-05 2.5E-09 50.9 1.0 71 570-645 132-214 (436)
88 TIGR00440 glnS glutaminyl-tRNA 97.1 0.0005 1.3E-08 46.0 3.4 92 61-189 5-96 (564)
89 PRK05912 tyrosyl-tRNA syntheta 96.9 0.0007 1.8E-08 45.0 2.9 54 587-646 182-239 (402)
90 pfam00579 tRNA-synt_1b tRNA sy 96.8 0.00064 1.6E-08 45.2 2.3 54 586-644 149-209 (291)
91 TIGR00463 gltX_arch glutamyl-t 96.8 0.00061 1.6E-08 45.4 1.7 100 58-198 103-202 (600)
92 cd00395 Tyr_Trp_RS_core Tyrosi 96.7 0.00083 2.1E-08 44.5 2.2 54 585-643 140-197 (274)
93 KOG1147 consensus 96.6 0.0088 2.3E-07 37.4 6.6 50 139-192 249-298 (712)
94 PRK00390 leuS leucyl-tRNA synt 96.5 0.0021 5.4E-08 41.7 3.1 11 344-354 258-268 (822)
95 KOG1148 consensus 96.5 0.0078 2E-07 37.7 6.0 16 126-141 115-130 (764)
96 cd07956 Anticodon_Ia_Arg Antic 96.5 0.013 3.3E-07 36.2 7.1 137 649-793 1-149 (156)
97 COG1384 LysS Lysyl-tRNA synthe 96.4 0.024 6.1E-07 34.4 7.9 95 587-683 230-329 (521)
98 COG0495 LeuS Leucyl-tRNA synth 96.4 0.0043 1.1E-07 39.5 4.0 111 380-528 379-497 (814)
99 COG0162 TyrS Tyrosyl-tRNA synt 96.3 0.0016 4.1E-08 42.5 1.5 50 587-642 181-233 (401)
100 PRK12556 tryptophanyl-tRNA syn 96.3 0.0022 5.6E-08 41.6 2.1 71 570-645 132-213 (328)
101 PRK00927 tryptophanyl-tRNA syn 96.2 0.0053 1.3E-07 38.9 3.7 93 570-672 121-231 (325)
102 cd00806 TrpRS_core Tryptophany 96.1 0.0014 3.7E-08 42.8 0.4 55 584-642 136-202 (282)
103 PRK08560 tyrosyl-tRNA syntheta 96.0 0.0027 6.8E-08 41.0 1.4 59 583-646 166-234 (333)
104 cd00808 GluRS_core Descriminat 96.0 0.012 3.2E-07 36.4 4.6 32 62-95 7-38 (239)
105 PRK12282 tryptophanyl-tRNA syn 95.8 0.0025 6.4E-08 41.2 0.6 82 570-661 126-219 (333)
106 COG0180 TrpS Tryptophanyl-tRNA 95.6 0.0048 1.2E-07 39.2 1.3 69 570-644 129-210 (314)
107 KOG4426 consensus 95.4 0.16 4E-06 28.7 8.3 59 621-682 435-493 (656)
108 PRK12283 tryptophanyl-tRNA syn 95.3 0.0052 1.3E-07 39.0 0.5 31 626-661 257-287 (398)
109 TIGR00464 gltX_bact glutamyl-t 94.7 0.086 2.2E-06 30.5 5.4 91 63-190 8-106 (513)
110 cd02156 nt_trans nt_trans (nuc 94.5 0.023 5.8E-07 34.5 2.2 71 63-159 4-74 (147)
111 PTZ00126 tyrosyl-tRNA syntheta 93.5 0.022 5.6E-07 34.6 0.5 68 573-645 213-286 (399)
112 PRK08560 tyrosyl-tRNA syntheta 91.2 0.18 4.6E-06 28.3 2.7 45 53-104 28-73 (333)
113 PRK12285 tryptophanyl-tRNA syn 90.1 0.31 7.9E-06 26.7 3.2 53 589-643 208-264 (369)
114 pfam00579 tRNA-synt_1b tRNA sy 90.1 0.25 6.4E-06 27.3 2.7 44 54-105 4-49 (291)
115 KOG0435 consensus 89.3 0.045 1.2E-06 32.4 -1.6 36 431-473 199-234 (876)
116 KOG2145 consensus 87.4 0.51 1.3E-05 25.2 2.7 24 618-641 260-286 (397)
117 TIGR00467 lysS_arch lysyl-tRNA 85.1 1.4 3.5E-05 22.2 4.0 99 588-687 233-338 (539)
118 KOG2623 consensus 76.9 1.6 4E-05 21.8 1.9 54 585-645 226-285 (467)
119 TIGR00233 trpS tryptophanyl-tR 70.8 2.2 5.6E-05 20.7 1.5 18 626-643 214-236 (366)
120 TIGR02902 spore_lonB ATP-depen 67.6 2.3 5.8E-05 20.6 1.0 29 565-595 204-240 (532)
121 KOG2713 consensus 66.6 2.8 7.3E-05 20.0 1.3 67 571-642 140-220 (347)
122 KOG2144 consensus 64.6 2.4 6E-05 20.6 0.5 56 582-641 173-230 (360)
123 KOG3361 consensus 62.2 2.6 6.7E-05 20.2 0.4 18 333-351 47-64 (157)
124 KOG1315 consensus 61.9 3.2 8.1E-05 19.6 0.8 10 798-807 212-221 (307)
125 TIGR02295 HpaD 3,4-dihydroxyph 58.3 3.2 8.1E-05 19.7 0.3 11 497-507 294-304 (312)
126 TIGR02414 pepN_proteo aminopep 58.0 3.8 9.6E-05 19.1 0.6 108 329-449 193-312 (898)
127 PRK09429 mepA penicillin-insen 57.9 3.5 8.9E-05 19.4 0.5 13 496-508 59-71 (270)
128 TIGR00515 accD acetyl-CoA carb 57.3 2.5 6.3E-05 20.4 -0.4 14 196-209 36-49 (292)
129 TIGR02093 P_ylase glycogen/sta 56.4 12 0.00029 15.8 6.0 35 836-873 602-636 (822)
130 pfam03411 Peptidase_M74 Penici 55.1 4.1 0.0001 18.9 0.4 13 496-508 29-41 (240)
131 PRK13945 formamidopyrimidine-D 53.3 5.6 0.00014 17.9 0.9 37 914-950 247-283 (283)
132 PRK10658 alpha-xylosidase YicI 53.2 13 0.00033 15.4 4.9 19 789-807 563-581 (772)
133 PRK11866 2-oxoacid ferredoxin 50.5 5.8 0.00015 17.8 0.6 16 186-201 8-23 (286)
134 COG4985 ABC-type phosphate tra 50.4 4 0.0001 19.0 -0.3 34 557-590 2-54 (289)
135 KOG0614 consensus 49.8 13 0.00034 15.4 2.3 51 235-294 212-262 (732)
136 COG5270 PUA domain (predicted 48.9 5.7 0.00014 17.9 0.3 27 180-206 1-27 (202)
137 KOG2916 consensus 47.5 13 0.00034 15.3 2.1 10 755-764 81-90 (304)
138 TIGR02919 TIGR02919 conserved 47.2 16 0.0004 14.8 5.3 43 469-521 103-145 (448)
139 PRK01103 formamidopyrimidine-D 47.1 7 0.00018 17.3 0.6 37 914-950 236-272 (273)
140 TIGR01677 pln_FAD_oxido plant- 46.8 9.2 0.00023 16.5 1.1 29 456-484 231-264 (577)
141 COG1098 VacB Predicted RNA bin 44.5 17 0.00043 14.7 2.2 44 332-384 20-69 (129)
142 PRK10445 endonuclease VIII; Pr 44.5 12 0.00032 15.6 1.5 36 914-949 227-262 (263)
143 KOG1763 consensus 42.9 14 0.00035 15.3 1.5 33 616-650 185-217 (343)
144 KOG0616 consensus 42.5 19 0.00048 14.3 2.7 24 169-192 149-172 (355)
145 pfam05746 DALR_1 DALR anticodo 42.4 19 0.00048 14.3 6.4 77 711-793 31-110 (117)
146 pfam03371 PRP38 PRP38 family. 42.4 11 0.00027 16.0 0.9 41 464-508 117-160 (173)
147 COG0104 PurA Adenylosuccinate 42.1 19 0.00048 14.3 5.1 44 297-344 26-73 (430)
148 KOG0598 consensus 41.4 19 0.00049 14.2 2.7 60 592-660 200-261 (357)
149 TIGR00018 panC pantoate--beta- 41.0 9.4 0.00024 16.4 0.5 59 579-645 145-205 (310)
150 TIGR00357 TIGR00357 methionine 40.5 8.1 0.00021 16.8 0.1 10 567-576 57-66 (135)
151 pfam09778 Guanylate_cyc_2 Guan 40.1 20 0.00052 14.1 3.9 79 97-187 7-106 (212)
152 TIGR02572 LcrR type III secret 39.8 12 0.0003 15.7 0.8 25 408-441 3-27 (142)
153 PRK13477 bifunctional pantoate 39.7 21 0.00052 14.1 3.9 11 63-74 26-36 (512)
154 KOG2369 consensus 38.9 20 0.00051 14.1 1.9 63 408-481 127-192 (473)
155 COG2260 Predicted Zn-ribbon RN 36.7 9.4 0.00024 16.4 -0.1 10 923-932 6-15 (59)
156 PRK11366 puuD gamma-glutamyl-g 36.5 10 0.00026 16.1 0.1 29 472-500 218-253 (254)
157 KOG3132 consensus 36.3 23 0.00059 13.7 2.0 11 598-608 204-214 (325)
158 PRK03991 threonyl-tRNA synthet 36.2 23 0.00059 13.7 4.0 51 53-107 72-131 (613)
159 cd03450 NodN NodN (nodulation 35.9 3.8 9.6E-05 19.2 -2.2 44 615-659 52-95 (149)
160 pfam01927 DUF82 Protein of unk 35.8 23 0.0006 13.7 4.2 19 83-101 12-30 (146)
161 PRK13795 hypothetical protein; 35.8 18 0.00047 14.4 1.3 22 184-205 3-24 (630)
162 pfam10520 Kua-UEV1_localn Kua- 35.7 11 0.00029 15.8 0.2 14 334-347 1-14 (178)
163 pfam06940 DUF1287 Domain of un 34.7 24 0.00062 13.5 2.8 29 63-94 23-51 (164)
164 PRK05294 carB carbamoyl phosph 34.6 22 0.00056 13.8 1.5 80 138-221 148-232 (1063)
165 PRK11869 2-oxoacid ferredoxin 34.5 15 0.00039 15.0 0.7 17 185-201 4-20 (284)
166 KOG2760 consensus 34.3 14 0.00035 15.2 0.4 28 791-821 326-353 (432)
167 CHL00174 accD acetyl-CoA carbo 33.8 17 0.00044 14.5 0.9 13 196-208 51-63 (305)
168 TIGR01369 CPSaseII_lrg carbamo 33.7 20 0.0005 14.2 1.1 128 69-221 87-231 (1089)
169 TIGR00506 ribB 3,4-dihydroxy-2 33.3 18 0.00047 14.4 0.9 37 328-378 32-75 (230)
170 pfam07082 DUF1350 Protein of u 33.3 23 0.0006 13.7 1.5 18 90-107 46-66 (250)
171 COG1202 Superfamily II helicas 33.2 12 0.00031 15.6 0.0 32 626-657 548-589 (830)
172 TIGR02642 phage_xxxx uncharact 33.0 18 0.00046 14.4 0.9 26 922-950 182-207 (270)
173 TIGR00872 gnd_rel 6-phosphoglu 32.7 12 0.00031 15.7 -0.1 50 434-508 250-303 (341)
174 pfam12574 120_Rick_ant 120kDa 32.6 16 0.0004 14.8 0.5 13 627-639 21-33 (39)
175 COG0266 Nei Formamidopyrimidin 32.1 23 0.00058 13.7 1.3 36 914-949 237-272 (273)
176 pfam05996 Fe_bilin_red Ferredo 31.0 27 0.0007 13.2 1.5 45 311-355 60-107 (228)
177 pfam11243 DUF3045 Protein of u 30.7 28 0.00072 13.1 1.9 28 161-188 23-51 (90)
178 pfam08271 TF_Zn_Ribbon TFIIB z 30.6 11 0.00027 16.0 -0.6 32 924-957 2-34 (40)
179 TIGR02682 cas_csx11 CRISPR-ass 30.3 24 0.00062 13.5 1.2 12 340-351 312-324 (1264)
180 COG4260 Membrane protease subu 30.2 29 0.00073 13.0 1.6 33 918-950 302-342 (345)
181 TIGR01017 rpsD_bact ribosomal 30.0 14 0.00036 15.2 -0.1 15 335-349 180-194 (217)
182 COG0610 Type I site-specific r 29.0 30 0.00077 12.9 4.6 65 584-663 597-667 (962)
183 PRK05813 single-stranded DNA-b 28.9 30 0.00077 12.9 1.5 42 436-489 117-164 (217)
184 TIGR02172 Fb_sc_TIGR02172 Fibr 28.8 23 0.00059 13.7 0.9 35 460-494 123-157 (234)
185 TIGR01179 galE UDP-glucose 4-e 28.7 30 0.00078 12.9 4.8 33 467-501 308-340 (341)
186 COG1743 Adenine-specific DNA m 27.9 25 0.00064 13.4 0.9 102 73-201 75-186 (875)
187 TIGR01163 rpe ribulose-phospha 27.1 32 0.00083 12.7 2.7 11 797-807 115-125 (216)
188 KOG1428 consensus 27.1 27 0.00069 13.2 0.9 12 75-86 95-106 (3738)
189 PRK12676 bifunctional inositol 26.8 33 0.00084 12.6 6.3 57 125-181 1-62 (262)
190 COG3110 Uncharacterized protei 26.7 22 0.00057 13.8 0.5 10 254-263 25-34 (216)
191 TIGR02390 RNA_pol_rpoA1 DNA-di 26.6 33 0.00084 12.6 5.9 56 137-205 104-159 (901)
192 pfam03854 zf-P11 P-11 zinc fin 26.3 33 0.00084 12.6 1.3 31 924-955 4-34 (50)
193 TIGR01394 TypA_BipA GTP-bindin 26.2 18 0.00047 14.4 -0.0 20 479-498 368-393 (609)
194 TIGR02890 spore_yteA sporulati 25.9 23 0.00059 13.7 0.4 14 429-442 87-100 (167)
195 pfam01756 ACOX Acyl-CoA oxidas 25.8 34 0.00087 12.5 2.0 28 631-658 24-51 (186)
196 pfam12496 BNIP2 Bcl2-/adenovir 25.8 19 0.00048 14.3 -0.1 11 614-624 108-118 (128)
197 PRK05654 acetyl-CoA carboxylas 25.4 11 0.00027 16.0 -1.4 23 196-218 33-55 (288)
198 KOG0385 consensus 25.2 35 0.00089 12.5 2.5 12 173-185 176-187 (971)
199 COG1501 Alpha-glucosidases, fa 25.0 35 0.0009 12.4 4.6 38 781-819 555-592 (772)
200 PRK05755 DNA polymerase I; Pro 24.9 35 0.0009 12.4 5.4 84 53-155 4-103 (889)
201 pfam12621 DUF3779 Phosphate me 24.9 34 0.00086 12.6 1.1 22 188-209 42-63 (95)
202 PRK08928 consensus 24.8 36 0.00091 12.4 5.4 107 52-184 3-127 (861)
203 pfam04918 DltD_M DltD central 24.8 29 0.00074 13.0 0.7 12 439-450 26-37 (163)
204 TIGR01810 betA choline dehydro 24.7 32 0.00082 12.7 1.0 45 607-672 367-413 (540)
205 pfam04111 APG6 Autophagy prote 24.4 36 0.00092 12.3 5.3 12 633-644 301-312 (356)
206 PRK01343 zinc-binding protein; 24.4 36 0.00092 12.3 1.6 25 922-951 9-34 (56)
207 COG4764 Uncharacterized protei 24.4 19 0.00047 14.4 -0.3 12 497-508 50-61 (197)
208 KOG0796 consensus 24.1 28 0.00072 13.1 0.6 19 722-740 132-150 (319)
209 COG1439 Predicted nucleic acid 23.9 27 0.0007 13.2 0.5 25 921-951 138-162 (177)
210 COG1734 DksA DnaK suppressor p 23.9 25 0.00064 13.4 0.3 11 430-440 80-90 (120)
211 cd05596 STKc_ROCK STKc_ROCK: S 23.8 37 0.00094 12.3 2.5 10 608-617 238-247 (370)
212 pfam11062 DUF2863 Protein of u 23.7 37 0.00095 12.3 1.2 34 666-703 173-206 (398)
213 KOG0610 consensus 23.3 38 0.00097 12.2 2.8 26 169-194 184-209 (459)
214 TIGR02494 PFLE_PFLC glycyl-rad 23.2 38 0.00097 12.2 1.2 19 666-684 232-250 (305)
215 COG4088 Predicted nucleotide k 23.0 34 0.00087 12.5 0.8 41 492-544 112-152 (261)
216 PRK13794 hypothetical protein; 23.0 38 0.00098 12.2 1.2 20 186-205 3-22 (473)
217 COG5252 Uncharacterized conser 22.9 39 0.00098 12.2 1.3 32 616-649 170-201 (299)
218 PRK13130 H/ACA RNA-protein com 22.7 20 0.00052 14.1 -0.4 10 923-932 6-15 (54)
219 TIGR02153 gatD_arch glutamyl-t 22.6 39 0.001 12.1 1.4 17 337-355 81-97 (413)
220 COG1996 RPC10 DNA-directed RNA 22.5 23 0.00058 13.7 -0.2 11 923-933 7-17 (49)
221 PRK11367 hypothetical protein; 21.7 20 0.0005 14.2 -0.6 11 619-629 203-213 (476)
222 smart00788 Adenylsucc_synt Ade 21.7 41 0.001 12.0 3.7 45 297-345 24-72 (421)
223 TIGR00868 hCaCC calcium-activa 21.6 15 0.00039 15.0 -1.2 66 631-699 606-716 (874)
224 pfam09152 DUF1937 Domain of un 21.4 41 0.0011 12.0 1.3 26 87-112 74-100 (117)
225 TIGR02199 rfaE_dom_II rfaE bif 21.4 33 0.00085 12.6 0.5 11 463-473 67-77 (144)
226 COG4905 Predicted membrane pro 21.0 42 0.0011 11.9 0.9 35 168-202 14-49 (243)
227 pfam01111 CKS Cyclin-dependent 20.6 23 0.00058 13.8 -0.5 13 592-604 42-54 (70)
228 TIGR02648 rep_term_tus DNA rep 20.6 20 0.0005 14.2 -0.8 61 405-486 163-223 (300)
229 cd03008 TryX_like_RdCVF Trypar 20.5 40 0.001 12.0 0.8 15 645-659 131-145 (146)
230 KOG0199 consensus 20.4 30 0.00076 12.9 0.1 27 81-107 110-139 (1039)
231 PRK11867 2-oxoglutarate ferred 20.4 36 0.00093 12.3 0.5 17 187-203 10-26 (280)
232 COG1751 Uncharacterized conser 20.4 43 0.0011 11.8 1.6 17 406-422 71-87 (186)
233 PRK09628 oorB 2-oxoglutarate-a 20.2 34 0.00086 12.5 0.3 19 185-203 8-26 (281)
234 KOG1779 consensus 20.1 11 0.00027 16.0 -2.3 28 924-952 36-63 (84)
235 COG2000 Predicted Fe-S protein 20.1 35 0.00089 12.4 0.4 13 496-508 115-127 (226)
236 KOG1312 consensus 20.1 44 0.0011 11.8 2.0 10 424-433 132-141 (341)
No 1
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=2220.08 Aligned_cols=901 Identities=45% Similarity=0.812 Sum_probs=853.3
Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 68676015888999888996897799999998647614454056888848996282255889762157785668789987
Q gi|254780445|r 7 ANYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRS 86 (963)
Q Consensus 7 ~~y~~tl~lPkt~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry 86 (963)
.|||+|||||||+||||+||+++|++||++|+++++|++..+.++++|+|+||||||||||.||||||+|||+|||++||
T Consensus 2 ~dy~~Tl~lPkT~Fpmr~n~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lH~GHaln~tlkDii~Ry 81 (910)
T PRK05743 2 MDYKDTLNLPKTDFPMRGNLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKS 81 (910)
T ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97054117789999988895777499999998779076678616998977982799998986424477878999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCC
Q ss_conf 67089826788882444208999999987655998334899999999999999999999999997060776369811577
Q gi|254780445|r 87 FQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMT 166 (963)
Q Consensus 87 ~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d 166 (963)
+||+||+|+|||||||||||||++|+|+++ +++.++++++||++||+||.++++.|++||+|||+|+||+|+|.|||
T Consensus 82 krm~G~~v~~~pGwD~hGLPiE~~v~k~~g---~~~~~~~~~~f~~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y~T~d 158 (910)
T PRK05743 82 KTMSGFDAPYVPGWDCHGLPIELKVEKKLG---KKRKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMD 158 (910)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCEECCC
T ss_conf 875899679999658686999999999619---98131999999999999999999999999997190264589726689
Q ss_pred HHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCC---CCCCCCCHHCCHH
Q ss_conf 6798999999999998796110343022057435736500210132105779998330375311---2200110000005
Q gi|254780445|r 167 RESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADY---LIKSQIVIWTTTP 243 (963)
Q Consensus 167 p~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~---~~~~~~~iwTTrP 243 (963)
|+|+++++|+|.+|+++||||||.+||+|||+|+|||||+||||+|++|+++||+|++.+.... ..+.+++||||||
T Consensus 159 ~~y~~~~~~~F~~l~ekGliYr~~kpV~Wcp~~~TaLA~~EVey~d~~s~si~v~f~l~~~~~~~~~~~~~~~~iwTTtP 238 (910)
T PRK05743 159 FEYEANIIRVLGKMAKKGYLYKGLKPVYWSPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKAGLDGLKDASLVIWTTTP 238 (910)
T ss_pred HHHHHHHHHHHHHHHHCCCEEECCCCCEECCCCCCCCCCHHEECCCEECCEEEEEEEECCCCCCCCCCCCCEEEEEECCH
T ss_conf 88999999999999986996857823204899994400101005775432599998943763333456774399970884
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCC-CEEEEEECCCCCCCCCEEEECCCCCC
Q ss_conf 78865445322776745899830665311112374355121118888876098-51784100111112857543137866
Q gi|254780445|r 244 WTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNV-KIALVCDVKAEDLSKTMCSHPLKKLG 322 (963)
Q Consensus 244 ~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~-~~~~~~~~~g~~l~g~~~~~Pl~~~~ 322 (963)
||||||+||+|||+++|++++ .+++||+|+++++.+....+. +.+++++++|++|+|++|.||+++
T Consensus 239 wTl~~n~avav~p~~~Y~~~~-----------~~~~~iva~~l~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~P~~~-- 305 (910)
T PRK05743 239 WTLPANQAIAVHPELDYALVE-----------VGEKLILAKDLVESVLKRLGWEDYEVLATFKGAELEGLVAQHPFYD-- 305 (910)
T ss_pred HHHHCCCEEEECCCCCEEECC-----------CCCEEEEHHHHHHHHHHHHCCCCEEEEEEEECCEECCCEEECCCCC--
T ss_conf 034206468877875056403-----------6745541998999999984774306653220535037689767789--
Q ss_pred CCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 51255114432233224454056405789889899876052122100220343023445510243100178632113554
Q gi|254780445|r 323 YTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGE 402 (963)
Q Consensus 323 ~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~ 402 (963)
+.+||+.||||++++|||+||+|||||++||+ +++++||+++++||++|+|++++|+|+|+.|++
T Consensus 306 --~~~pii~~d~V~~~~GTG~Vh~aPaHg~~D~~---------~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~---- 370 (910)
T PRK05743 306 --RDSPVILGDHVTLDAGTGLVHTAPGHGEDDYV---------VGQKYGLEVLNPVDDDGVYTEEAPLFAGLFVFK---- 370 (910)
T ss_pred --CEEEEEECCCCCCCCCCCEEEECCCCCCHHHH---------HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----
T ss_conf --65227844732677776118857879843677---------887649986544587763436774458834998----
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 44567545235664798210000001221132101320333310236630224554236899998752000002444343
Q gi|254780445|r 403 KGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKN 482 (963)
Q Consensus 403 ~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~ 482 (963)
||+.|++.|+++|.|++.+.|+||||||||||+|||+|+++||||+||+ ..+|+++++++++|+|+|+++++
T Consensus 371 ---a~~~Ii~~L~~~g~L~~~~~~~Hsyp~cwR~~~Pvi~rat~QWFi~~d~-----~~~r~~~l~~i~~v~~~P~~~~~ 442 (910)
T PRK05743 371 ---ANPKIIELLEEKGALLKLEKITHSYPHCWRTKKPIIFRATPQWFISMDK-----KTLREQALKAIEKVKWIPSWGKN 442 (910)
T ss_pred ---HHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCEEEECCHHHHHCCC-----HHHHHHHHHHHHHCCEECHHHHH
T ss_conf ---8999999998779854342101367533266886267631003423471-----88999999999846741516787
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC-CEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 20244304320000112345672258982588-47325211244421222118874335640111468878875545664
Q gi|254780445|r 483 RLRSMIENRPDWLLSRQRNWGVPICFFYNEKG-EILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKD 561 (963)
Q Consensus 483 r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~-~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~D 561 (963)
||.+||+||+||||||||+||+|||+|||++| +++++.++++++++++++.|+|+||+.+..+++++.+++..++|++|
T Consensus 443 r~~~~i~~r~DWcISRQR~WG~PIPv~~~~~~~~~~~~~~~~~~i~~~~~~~G~d~w~~~~~~~~l~~~~~~~~~~r~~D 522 (910)
T PRK05743 443 RIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHRTPELIEHVAKLFEKEGIDAWFELDAKELLPEGYPADQYEKETD 522 (910)
T ss_pred HHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHEEECCC
T ss_conf 99999707988625213566882259997899700476888999999887507641123999883789898310064475
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCC
Q ss_conf 21000033354543322222333443100255444211124554443311784000013037826213453000012344
Q gi|254780445|r 562 ILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNV 641 (963)
Q Consensus 562 vlDvWfDSg~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNv 641 (963)
|||||||||+||++++...++..||+|+|+||+|||||||||+|++++++++++|||+|++||||+|++|+|||||+|||
T Consensus 523 vlD~WFdSGss~~~~~~~~~~~~~PaDly~eG~Dq~RgWF~s~ll~s~~~~~~~Pfk~v~~hG~vlD~~G~KMSKS~GNv 602 (910)
T PRK05743 523 ILDVWFDSGSTHAAVLEDRERLGYPADLYLEGSDQHRGWFQSSLLTSVATNGKAPYKQVLTHGFTVDGKGRKMSKSLGNV 602 (910)
T ss_pred CCCCEECCCCCCHHHCCCCCCCCCCCCEEECCCCHHHEEHHHHHHHEEEECCCCCEEEEEECCEEECCCCCCCCCCCCCC
T ss_conf 53210027986311114662116843232337652210236622122452178884179861328989888888878777
Q ss_pred CCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHH
Q ss_conf 333664113675788788871787665544310256777640000011000001224444567--310111278887543
Q gi|254780445|r 642 VFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNE--PSLADMPALEQLMLH 719 (963)
Q Consensus 642 i~p~~ii~~yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~--~~~~~l~~~DkwiLs 719 (963)
|+|.++|++||||+||||+++++++.|+++|+++++++.+.|||||||+||+|+|+.++++.. .+.++++.+|||||+
T Consensus 603 idP~~ii~~yGAD~lRlwvas~d~~~d~~~s~~il~~~~~~yrKi~Nt~rf~l~nl~~f~~~~~~~~~~~l~~lD~wiL~ 682 (910)
T PRK05743 603 IDPQDVIKKYGADILRLWVASTDYSGDVRISDEILKQVAESYRRIRNTLRFLLGNLNDFDPAKDAVPYEELVELDRWALH 682 (910)
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHH
T ss_conf 99899986549409999987257434545568999889999999999999998632168832245892446576899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 68999999889876540122668899878630240010102012227899808999999999999999999970004489
Q gi|254780445|r 720 RLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFT 799 (963)
Q Consensus 720 kl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~ 799 (963)
+|++++++|+++|++|+|++|++.|++||+++||+||||++||||||++.++..|+++|+||+++|+++++|||||+||+
T Consensus 683 ~l~~~~~~v~~~~~~y~f~~a~~~l~~F~~~dls~~Y~~~~Kdrly~~~~~~~~R~s~q~~L~~vl~~l~~llaPi~Pf~ 762 (910)
T PRK05743 683 RLNELQEEIIEAYENYDFHKVYQALHNFCSVDLSSFYLDIIKDRLYTDKADSLARRSAQTALYHILEALVRWLAPILSFT 762 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999986355889999999885756879998761244414789849999999999999999999998664699
Q ss_pred HHHHHHHCCCCCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHH-HHH
Q ss_conf 9999986388677345335889983568989999999999999999999999997389997444038998296899-977
Q gi|254780445|r 800 AEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSL-ISN 878 (963)
Q Consensus 800 aEEiw~~l~~~~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~~~-l~~ 878 (963)
|||+|++|+++.+|||+++||+.+ .|.+.++++.|+.++++|+.|+++||.+|++|.||+||||.|+|+++++.. +..
T Consensus 763 ~EEiw~~l~~~~~SV~l~~wp~~~-~~~~~~l~~~w~~l~~lR~~V~k~lE~~R~~k~IgsSLea~v~l~~~~~~~~~L~ 841 (910)
T PRK05743 763 AEEIWQYLPEREESVFLEEWPEGP-FWADEELLAKWDELRALRDEVNKALEEARNEKVIGSSLEAEVTLYADDELAALLA 841 (910)
T ss_pred HHHHHHHCCCCCCCEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEECHHHHHHHH
T ss_conf 999997388999976826799996-5569789999999999999999999999866988953503799981889999987
Q ss_pred HCCCCHHHHEEECEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 2211365511204169963777533201236786289998178852852175467447885635303788999632
Q gi|254780445|r 879 IEGENLAEICITSDITIVHSNGPTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAAVLHE 954 (963)
Q Consensus 879 l~~~~L~~~~ivS~v~i~~~~~~~~~~~~~~~~~~~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~~ 954 (963)
...++|+++|+||+|++..... .+.++++|.|.+|.|+||||||+|+++||.+++|++||.||.+||+|
T Consensus 842 ~~~~~L~~ifivS~v~l~~~~~-------~~~~~~~v~v~~a~g~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~g 910 (910)
T PRK05743 842 SLGDELRFLLIVSQVTVADLAA-------EEVEGLAVVVEKAEGEKCERCWHYREDVGSDAEHPTLCGRCVSVVAG 910 (910)
T ss_pred HHHHHHHHHHEECEEEEECCCC-------CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 7288999876524299962776-------77796389999799997713098976537788989768427876188
No 2
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=0 Score=2209.92 Aligned_cols=953 Identities=58% Similarity=1.049 Sum_probs=895.6
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 77576867601588899988899689779999999864761445405688884899628225588976215778566878
Q gi|254780445|r 3 SESKANYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDV 82 (963)
Q Consensus 3 ~~~~~~y~~tl~lPkt~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi 82 (963)
+..+-|||+|||||||+||||+||+++|++||++|+++++|++..+.++++|+|+||||||||||.|||||++|||+|||
T Consensus 3 ~~~~~~y~~tl~lp~t~fp~r~nl~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~~~dGPPyanG~lH~GHaln~tikDi 82 (966)
T PRK13804 3 TTEAMDYKKTLYLPQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDV 82 (966)
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCHHHCHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 65667817511889999998888123269999998754899999985689997699579999999861225566689999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCE
Q ss_conf 99876708982678888244420899999998765599833489999999999999999999999999706077636981
Q gi|254780445|r 83 IVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPY 162 (963)
Q Consensus 83 ~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y 162 (963)
++||+||+||+|+|||||||||||||++|+|+++.+++++.++++++||++||+||.++++.|++||+|||+|+||+|+|
T Consensus 83 i~Rykrm~G~~V~~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~f~~~cr~~a~~~i~~~~~q~~rlG~~~DW~~~y 162 (966)
T PRK13804 83 IVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPLNEFRKECREYALSWIDVQREEFKRLGVIGDWENPY 162 (966)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCC
T ss_conf 99998748996689997688878999999997765289823389999999999999999999999999829202258984
Q ss_pred ECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCC-CCCCCCCHHCC
Q ss_conf 15776798999999999998796110343022057435736500210132105779998330375311-22001100000
Q gi|254780445|r 163 TTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADY-LIKSQIVIWTT 241 (963)
Q Consensus 163 ~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~-~~~~~~~iwTT 241 (963)
.||||+|++++||+|.+|+++||||||.+||||||.|+|||||+||||+|+.|+++||+|++.+.... +.+.+++||||
T Consensus 163 ~T~dp~y~~~~~~~F~~l~ekGliYr~~~pV~Wcp~~~TaLA~~EVey~d~~s~s~~v~f~v~~~~~~~~~~~~l~iwTT 242 (966)
T PRK13804 163 TTMDFHAEARIAREFMKFAAKGQLYRGSKPVMWSVVERTALAEAEVEYHDHESDTIWVKFPVKDGKGILLTGASVVIWTT 242 (966)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCCEECCEEEEEEEECCCCCCCCCCCCEEEEEC
T ss_conf 22898999999999999998799884385147689888662367547667866669999873466200047870677507
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCC-CEEEEEECCCCCCCCCEEEECCCC
Q ss_conf 0578865445322776745899830665311112374355121118888876098-517841001111128575431378
Q gi|254780445|r 242 TPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNV-KIALVCDVKAEDLSKTMCSHPLKK 320 (963)
Q Consensus 242 rP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~-~~~~~~~~~g~~l~g~~~~~Pl~~ 320 (963)
||||||||+|++|||+.+|+++++...........++.+|+|+.+++.+.+..+. .++++.+++|++|+|++|.||+.+
T Consensus 243 tPwTl~~n~avav~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~l~e~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~ 322 (966)
T PRK13804 243 TPWTIPANRAISYSPDIEYGLYEVTGAENDNWAKPGEKLVVADALAESVAKKAGVESFERVRDVKADDLEAIVCAHPLKG 322 (966)
T ss_pred CCCHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCCEECCCEEECCCCC
T ss_conf 85022021020245776437899504542112445515665477899999873764227873001500047665266655
Q ss_pred C--CCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6--65125511443223322445405640578988989987605212210022034302344551024310017863211
Q gi|254780445|r 321 L--GYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLD 398 (963)
Q Consensus 321 ~--~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~ 398 (963)
. ++++.+||+.||||++++|||+||+|||||++||+++++.+..... ..+++++||++|+|++++|.|.|..+.+
T Consensus 323 ~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPaHg~~Dy~~~~k~~L~~~~---~~~i~~~vd~~G~~~~~~~~~~g~~v~~ 399 (966)
T PRK13804 323 LDGGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFEVWMKYGRELEV---RTAIPFTVDEDGFYTEDAPGFGGARVID 399 (966)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCC---CCCCCCCCCCCCEECCCCCHHCCCCCCC
T ss_conf 5666671578981683156778563775577887889999983987310---3577875688760654560012554213
Q ss_pred C-CCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 3-554445675452356647982100000012211321013203333102366302245542368999987520000024
Q gi|254780445|r 399 D-AGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFP 477 (963)
Q Consensus 399 ~-~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P 477 (963)
. +....+|++.|++.|+++|.|++.+.|+|+||||||||+|||+|+++||||+|++...+...+|+++++++++|+|+|
T Consensus 400 ~~G~~~~~a~~~Ii~~L~e~g~L~~~~~~~HsyP~~wR~~~Pvi~r~t~QWFi~~~~~~~~~~~lr~~~l~~i~~v~~~P 479 (966)
T PRK13804 400 DKGKKYGDANKAVIEALIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGGTLRSRALDAIKKTRFVP 479 (966)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 46873656279999999967996455641247763456786279960461478735343213899999998765435065
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCC-CCCCCCCC
Q ss_conf 44343202443043200001123456722589825884732521124442122211887433564011146-88788755
Q gi|254780445|r 478 SSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFL-GDRASEPW 556 (963)
Q Consensus 478 ~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~-~~~~~~~~ 556 (963)
+++++||.+||+||+|||||||||||+|||+|||++|++++++++..++.+.++..|++.|++.+..+.++ +..++..+
T Consensus 480 ~~~~~r~~~~l~~~~DW~ISRQRyWG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g~d~w~~~~~~~~~~~~~~~~~~~ 559 (966)
T PRK13804 480 AAGQNRLRGMIEDRPDWVISRQRAWGVPIPVFVDENGEILMDDEVNERIADAFEEEGADAWFAEGAKERFLGGFHPGEEW 559 (966)
T ss_pred HHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHH
T ss_conf 34344555121578676663113458875179837997445756778999998761876333457476558887874550
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHC
Q ss_conf 45664210000333545433222223334431002554442111245544433117840000130378262134530000
Q gi|254780445|r 557 IQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSK 636 (963)
Q Consensus 557 ~r~~DvlDvWfDSg~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSK 636 (963)
+|++||||||||||++|++++...++..||+|+|+||+|||||||+|+|++++++++++|||+|++||||+|++|+||||
T Consensus 560 ~r~~DvlD~WfdSgss~~~~~~~~~~~~~PaD~y~eG~Dq~rgWF~s~l~~s~~~~~~~Pfk~v~~hG~VlDe~G~KMSK 639 (966)
T PRK13804 560 TKVTDILDVWFDSGSTHAFVLEDRPDLPWPADLYLEGSDQHRGWFHSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSK 639 (966)
T ss_pred EECCCHHHHHHHCCCCCCCCCCCHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCEEECCCCCCCCC
T ss_conf 74131144665157753201158544589741686254188869999998742206887745103411689889888878
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCHHHHHHHHH
Q ss_conf 1234433366411367578878887178766554431025677764000001100000122444456-731011127888
Q gi|254780445|r 637 SKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGN-EPSLADMPALEQ 715 (963)
Q Consensus 637 S~GNvi~p~~ii~~yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~-~~~~~~l~~~Dk 715 (963)
|+||||+|.++|++||||+||||+|++++++|++||+++++++.++|||||||+||+++|+.++++. ..+.++++.+|+
T Consensus 640 S~GNvvdP~~ii~~yGADalRl~~as~~~~~d~~~~~~~l~~~~~~~~ki~Nt~rf~l~nl~~f~~~~~~~~~~l~~~D~ 719 (966)
T PRK13804 640 SLGNVVDPQDVIKQSGADILRLWVASVDYQDDQRIGKEILKTNAETYRKLRNTLRWMLGTLAHFDPGEAVAYADLPELER 719 (966)
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHH
T ss_conf 78898998999987292188899984775446345689999999999999999999998642798323489223528789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 75436899999988987654012266889987863024001010201222789980899999999999999999997000
Q gi|254780445|r 716 LMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPI 795 (963)
Q Consensus 716 wiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi 795 (963)
|||++|++++++++++|++|+|+.|++.|++||+++||+||||++||||||++.++..|+++|+||++||.+++++||||
T Consensus 720 wil~~l~~~~~~v~~~~~~Y~f~~a~~~l~~F~~~dLs~~Yle~~Kdrly~~~~~~~~rrsaq~~L~~il~~l~~llAPi 799 (966)
T PRK13804 720 LMLHRLNELDATVRKAYEAFDFKTIYKALVNFMTVDLSAFYFDIRKDALYCDAPSSLRRKAALTVIYEIFDRLTKWLAPI 799 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999985113599999999999998787999988437540579983999999999999999999999767
Q ss_pred HHHHHHHHHHHCCC-CCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHH
Q ss_conf 44899999986388-67734533588998356898999999999999999999999999738999744403899829689
Q gi|254780445|r 796 LPFTAEEAWLSLNP-EAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSS 874 (963)
Q Consensus 796 ~P~~aEEiw~~l~~-~~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~~ 874 (963)
+||+|||+|+++.+ +.+|||++.||..+..+.|+.+++.|+.++++|+.|+++||.+|++|.||+||||.|+|++++..
T Consensus 800 ~Pf~aEEiw~~~~~~~~~Sv~l~~~p~~~~~~~d~~l~~~w~~l~~lr~~V~~~lE~aR~~k~IgssLea~v~i~~~~~~ 879 (966)
T PRK13804 800 LPFTTEEAWLYRYPEEEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRRVVTGALEIERAAKRIGSSLEAAPTVYISDPE 879 (966)
T ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHH
T ss_conf 28999999972557899876711489997210697999999999999999999999998769989733057999818689
Q ss_pred HHHHHCCCCHHHHEEECEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99772211365511204169963777533201236786289998178852852175467447885635303788999632
Q gi|254780445|r 875 LISNIEGENLAEICITSDITIVHSNGPTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAAVLHE 954 (963)
Q Consensus 875 ~l~~l~~~~L~~~~ivS~v~i~~~~~~~~~~~~~~~~~~~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~~ 954 (963)
++..+.+.+|+++||||+|++..++.+.+++...+.++++|.|.+|.|+||||||+|+++||.+++||+||+||++||++
T Consensus 880 ~~~~l~~~~l~~~~ivS~v~l~~~~~~~~~~~~~~~~~~~v~v~~a~g~KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~e 959 (966)
T PRK13804 880 LLAALEGLDFAEICITSQLTVAAAEAPADAFRLDEVEGVAVVVEKAEGEKCARSWRITPDVGSDPYYPDVSPRDAAALRE 959 (966)
T ss_pred HHHHHCCCCHHHHHEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98652507086846661069965888533223456786499998489995832199985436898988758779999999
Q ss_pred CCCCC
Q ss_conf 69852
Q gi|254780445|r 955 LGYPK 959 (963)
Q Consensus 955 ~g~~~ 959 (963)
. .++
T Consensus 960 ~-~~~ 963 (966)
T PRK13804 960 W-KAL 963 (966)
T ss_pred H-HHC
T ss_conf 8-624
No 3
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=2184.95 Aligned_cols=915 Identities=42% Similarity=0.752 Sum_probs=857.2
Q ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH-HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 68676015888999888996897799999998647614454-05688884899628225588976215778566878998
Q gi|254780445|r 7 ANYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIR-ESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVR 85 (963)
Q Consensus 7 ~~y~~tl~lPkt~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~-~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~R 85 (963)
.+|++|||||+|+||||+||+++|++++++|+++++|++.. +.++|+|+|+||||||||||.+|+|||+|+||||||.|
T Consensus 1 ~~~k~tl~lp~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~R 80 (933)
T COG0060 1 MDYKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVR 80 (933)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98433356766777766992341889998888736999999997389980897479997789822656677666663433
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECC
Q ss_conf 76708982678888244420899999998765599833489999999999999999999999999706077636981157
Q gi|254780445|r 86 SFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTM 165 (963)
Q Consensus 86 y~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~ 165 (963)
|++|+||+|.++|||||||||||++|||+++..++...++++++||++||++|.++++.|+++|+|||+|+||+|+|.||
T Consensus 81 y~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tm 160 (933)
T COG0060 81 YKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTM 160 (933)
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECC
T ss_conf 32045885898899767882288999998287631143348999999999999999999999987636763268980327
Q ss_pred CHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHH
Q ss_conf 76798999999999998796110343022057435736500210132105779998330375311220011000000578
Q gi|254780445|r 166 TRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWT 245 (963)
Q Consensus 166 dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~T 245 (963)
|++|++.+||+|++|++|||||||.|||+|||+|+|||||+||||.|++||||||+||+++.. ...+.++|||||||||
T Consensus 161 d~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~-~~~~~~lviWTTTPWT 239 (933)
T COG0060 161 DPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEG-LDENAYLVIWTTTPWT 239 (933)
T ss_pred CHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCHHHHHHCCCCCCCCEEEEEEEECCCC-CCCCCEEEEEECCCCC
T ss_conf 889999999999999977975227700122687776003666402566896289997733578-8777079999489877
Q ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCC-EEEEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf 8654453227767458998306653111123743551211188888760985-178410011111285754313786651
Q gi|254780445|r 246 IPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVK-IALVCDVKAEDLSKTMCSHPLKKLGYT 324 (963)
Q Consensus 246 l~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~-~~~~~~~~g~~l~g~~~~~Pl~~~~~~ 324 (963)
||||+||+||||.+|+++++ ++++||+|+++++.++...+.+ ++++++++|++|+|+.|.|||......
T Consensus 240 LPaN~aiav~pd~~Y~lv~~----------~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~ 309 (933)
T COG0060 240 LPANLAIAVHPDLDYVLVEV----------NGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYD 309 (933)
T ss_pred CHHCCEEEECCCCCEEEEEE----------CCEEEEEHHHHHHHHHHHCCCCCEEEEEEEEHHHHCCCEEECCCCCCCCC
T ss_conf 31004367679851699997----------88899982998999998709842077677553662878764887654545
Q ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 25511443223322445405640578988989987605212210022-03430234455102431001786321135544
Q gi|254780445|r 325 FSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVD-IKVPSPVDGRGFYTTEAPGFSGARVLDDAGEK 403 (963)
Q Consensus 325 ~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~-l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~ 403 (963)
+.+||+.||||+++.|||+||+|||||+|||. +++++| +++++|||++|+||++++.|.|++|++
T Consensus 310 ~~~~vi~gd~VT~d~GTG~VHtAPghGeeDy~---------vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~d----- 375 (933)
T COG0060 310 RAFPVILGDHVTLDDGTGLVHTAPGHGEEDYE---------VGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKD----- 375 (933)
T ss_pred CEEEEEECCEEECCCCCCCEECCCCCCHHHHH---------HHHHCCCCCCCCCCCCCCCCCCCCHHHCCCEECC-----
T ss_conf 60468852767227984105638989878999---------9998299676466688855666543217824000-----
Q ss_pred CCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 45675452356647982100000012211321013203333102366302245542368999987520000024443432
Q gi|254780445|r 404 GNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNR 483 (963)
Q Consensus 404 ~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r 483 (963)
||+.||+.|+++|.|++.+.|+||||||||||+|||||||+||||+|+ ++|++|++++++|+|+|+++++|
T Consensus 376 --An~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~-------~~r~~~l~~i~~v~w~P~~~~~R 446 (933)
T COG0060 376 --ANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVD-------KLRDKMLKEINKVNWVPDWGKNR 446 (933)
T ss_pred --CCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHEEEHH-------HHHHHHHHHHHCCEEECHHHHHH
T ss_conf --789999999867953153357757986667898069850520336788-------89999999985556887157899
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEECCC-CCEEE-CCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCC-CCCCCCCCCC
Q ss_conf 024430432000011234567225898258-84732-52112444212221188743356401114688-7887554566
Q gi|254780445|r 484 LRSMIENRPDWLLSRQRNWGVPICFFYNEK-GEILL-DKAINDRIIKTFKDQGSDAWFSEGSRDFFLGD-RASEPWIQSK 560 (963)
Q Consensus 484 ~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~-~~~~~-~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~-~~~~~~~r~~ 560 (963)
|.+||+||+||||||||+||||||+|+|++ |++++ ..++.+++.+.+++.|++.||.....+++++. .++..|+|++
T Consensus 447 ~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~ 526 (933)
T COG0060 447 FGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVP 526 (933)
T ss_pred HHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCEECCHHHHHHHHHHHHHHCCCHHHHCCCHHHHCCCCCCCCCEEEECC
T ss_conf 99997189864365166678853379988999742328999999987743217266515634764578888765059657
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCC
Q ss_conf 421000033354543322222333443---10025544421112455444331178400001303782621345300001
Q gi|254780445|r 561 DILDVWFDSACTHTILLGKDPKLAWPA---DVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKS 637 (963)
Q Consensus 561 DvlDvWfDSg~s~~~~~~~~~~~~~Pa---D~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS 637 (963)
|||||||||||||++++....+..||+ |||+||+|||||||||||++|++++|++|||+|++||||||++|+|||||
T Consensus 527 DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKS 606 (933)
T COG0060 527 DVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKS 606 (933)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCCCCCCCCC
T ss_conf 54688873789711110775444676555757997066552268999999999728850787763261788888876555
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCHHHHHHHHH
Q ss_conf 2344333664113675788788871787665544310256777640000011000001224444567--31011127888
Q gi|254780445|r 638 KGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNE--PSLADMPALEQ 715 (963)
Q Consensus 638 ~GNvi~p~~ii~~yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~--~~~~~l~~~Dk 715 (963)
+||+|+|.+++++||||+||||+++++++.|+++|+++++++.+.||+||||+||+++|++++++.. ...++++.+||
T Consensus 607 lGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Dr 686 (933)
T COG0060 607 LGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDR 686 (933)
T ss_pred CCCCCCHHHHHHHHCCHHEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHH
T ss_conf 78818989998762763404665615823032027889999999999999999999885058994213351444232179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 75436899999988987654012266889987863024001010201222789980899999999999999999997000
Q gi|254780445|r 716 LMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPI 795 (963)
Q Consensus 716 wiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi 795 (963)
|||+++++++++++++|++|+|+++++.|++||+.|||+||||++|||+|+++.++.+|+++|+|||+|+.+++++||||
T Consensus 687 wil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPi 766 (933)
T COG0060 687 WILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPI 766 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999846799999999999885665889888788764047999889999999999999999997101
Q ss_pred HHHHHHHHHHHCCCC--CCCEEECCCCCCCHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
Q ss_conf 448999999863886--77345335889983568--98999999999999999999999999738999744403899829
Q gi|254780445|r 796 LPFTAEEAWLSLNPE--AVSVHLELFPIIPLEWQ--NACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYIT 871 (963)
Q Consensus 796 ~P~~aEEiw~~l~~~--~~SI~~~~wP~~~~~~~--d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~ 871 (963)
+||||||+|++|.++ .+|||+++||+....+. +..+...|..++++|..++++++.+|.++.|+++|++.++++..
T Consensus 767 lPftaEeiw~~l~~~~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~lnak~~~~~~ 846 (933)
T COG0060 767 LPFTAEEIWQNLPGERKEESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTE 846 (933)
T ss_pred CHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 03659999974766788753670357655432142457889999988788889999999876653664301057999606
Q ss_pred CHHHHHHHCCCCHHHHEEECEEEEECCCCCCCC---CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 689997722113655112041699637775332---01236786289998178852852175467447885635303788
Q gi|254780445|r 872 DSSLISNIEGENLAEICITSDITIVHSNGPTDA---FRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARD 948 (963)
Q Consensus 872 d~~~l~~l~~~~L~~~~ivS~v~i~~~~~~~~~---~~~~~~~~~~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC 948 (963)
+...+..+ ..+|..+|++|.+.+.......+. ....+..++.+.+.+++|.||+|||++..+++.+..++.||.||
T Consensus 847 ~~~~~~~~-~~~l~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~eg~~c~r~~~~~~~~~~~~~~e~l~~~~ 925 (933)
T COG0060 847 DSELLYKL-KPNLGKVLITSAVEVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRC 925 (933)
T ss_pred CHHHHHHH-CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 24555431-33478897533799986530356034554303454058888616775674899807667443432479999
Q ss_pred HHHHHHCC
Q ss_conf 99963269
Q gi|254780445|r 949 AAVLHELG 956 (963)
Q Consensus 949 ~~vl~~~g 956 (963)
..+|.+.+
T Consensus 926 v~~iq~~r 933 (933)
T COG0060 926 VRRIQEMR 933 (933)
T ss_pred HHHHHHCC
T ss_conf 99986439
No 4
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=2092.29 Aligned_cols=833 Identities=39% Similarity=0.690 Sum_probs=775.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99888996897799999998647614454056888848996282255889762157785668789987670898267888
Q gi|254780445|r 19 DFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVP 98 (963)
Q Consensus 19 ~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~ 98 (963)
.||||+||+++|+++|++|+++++|++..+.++++|.|+||||||||||.||||||+||||||||+|||+|+||+|.|.|
T Consensus 1 ~~~~~~nl~~~E~~~~~~W~~~dif~~~~~~~~~~~~F~lhDGPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~p 80 (938)
T TIGR00392 1 KFPMRGNLSKREEKILKFWQEKDIFEKVKKRNKDKPEFVLHDGPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKP 80 (938)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 98877882125757776677899999999850899835874485876799740255666761123210112250032047
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCH-HHCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHH
Q ss_conf 824442089999999876559983-3489-99999999999999999999999970607763698115776798999999
Q gi|254780445|r 99 GWDCHGLPIEWKVENEYLAKGKKK-DDIP-VNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASE 176 (963)
Q Consensus 99 GwD~hGLPiE~~vek~l~~~~~~~-~~~~-~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~ 176 (963)
||||||||||++|+|+|+..++.. .... +++||++||++|.++++.|++||+|||+|+||+++|.|||++|++.+||+
T Consensus 81 GWDtHGLPIE~~Vek~lg~~~~~~~~~~~g~E~fr~~Cr~~A~~~~~~q~~~F~rLG~w~Dwe~pY~T~d~~y~~~~w~~ 160 (938)
T TIGR00392 81 GWDTHGLPIELKVEKKLGISGKKEIESLEGIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWL 160 (938)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 86657870244564047876400022044389999999999999999999888853120225578506788999999999
Q ss_pred HHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE-----EECCEEEEEEEECCCCCCC------------CCCCCCHH
Q ss_conf 999998796110343022057435736500210132-----1057799983303753112------------20011000
Q gi|254780445|r 177 LLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD-----VDSDSILVGFPVKSSADYL------------IKSQIVIW 239 (963)
Q Consensus 177 F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d-----~~~~s~~v~F~l~~~~~~~------------~~~~~~iw 239 (963)
|++|++||||||+.|||+|||+|+||||+|||||.| +.|||+||+|++.+..... .+.+||||
T Consensus 161 l~~~~eKGL~~~~~kpv~WSp~~~TaLAeaE~ey~~~Y~d~v~dpS~yv~F~~~~~~~~~rh~~~~~~~~n~~~~~l~iW 240 (938)
T TIGR00392 161 LKELHEKGLLYRGLKPVYWSPRCETALAEAEVEYKEEYKDNVKDPSIYVKFPVKKDSKTERHAKVKLSGVNGLDISLVIW 240 (938)
T ss_pred HHHHHHCCCEEECCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 99997524202255221144144670247630588732157606228898753156125678874268757888689996
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCC-----CEEEEEECCCCCCCCCEE
Q ss_conf 000578865445322776745899830665311112374355121118888876098-----517841001111128575
Q gi|254780445|r 240 TTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNV-----KIALVCDVKAEDLSKTMC 314 (963)
Q Consensus 240 TTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~-----~~~~~~~~~g~~l~g~~~ 314 (963)
||||||||||+|||||||++|+++...... ....+.+|+|+.|++++....+. +++++.+++|++|+|+.|
T Consensus 241 TTTPWTLPaN~Aiav~pd~eY~~~~~~~~y----~g~~~~~i~a~~L~e~l~~~~g~~h~~~~~e~~~~~kG~~Le~l~Y 316 (938)
T TIGR00392 241 TTTPWTLPANLAIAVHPDFEYALVQLETDY----SGKEEYLILAKKLVEKLLNKLGVEHDITDYEIIKTFKGSDLEGLEY 316 (938)
T ss_pred CCCCCHHHHHHHEEECCCEEEEEEEECCCC----CCCEEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEE
T ss_conf 688714466416011445068999866874----6631255512567898864215534531107865551644165246
Q ss_pred EECCCCCCCCEE-----------------EECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE--EEE
Q ss_conf 431378665125-----------------5114432233224454056405789889899876052122100220--343
Q gi|254780445|r 315 SHPLKKLGYTFS-----------------VPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI--KVP 375 (963)
Q Consensus 315 ~~Pl~~~~~~~~-----------------~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l--~~~ 375 (963)
+|||........ ..|+.|||||.+.||||||+|||||+|||. +|++||| ++.
T Consensus 317 ~hpl~~~~~~~~~m~~~~L~~~~~~~e~~~~v~~gdhVT~~~GTG~VHtAPghG~eDy~---------~g~kygl~~e~~ 387 (938)
T TIGR00392 317 EHPLYDKVSQLKGMVVEELIERVDEKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYE---------IGKKYGLPDEVL 387 (938)
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCEEEECCCCCCHHHHH---------HHHHHCCCCCCC
T ss_conf 52665322011563252322310689864489840045468897226878898732899---------999828986431
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCC--CCC-----------CCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEE
Q ss_conf 023445510243100178632113554--445-----------6754523566479821000000122113210132033
Q gi|254780445|r 376 SPVDGRGFYTTEAPGFSGARVLDDAGE--KGN-----------ANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIF 442 (963)
Q Consensus 376 ~~vd~~G~~~~~~~~~~G~~v~~~~~~--~~~-----------a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~ 442 (963)
+|||+.|+|+.++.+++|++|.+.+.. ..+ ||+.||+.|+++|+|+..+.|+||||||||||+||||
T Consensus 388 ~pvD~~G~y~~~~~~~~G~~v~~~d~~yi~~~~R~V~~Ayd~~An~~I~~~L~~~~~Ll~~e~i~H~YPhcWRtk~P~IY 467 (938)
T TIGR00392 388 SPVDEKGVYTEEVADFKGRFVKDADKDYIIIKGRYVKDAYDDEANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIY 467 (938)
T ss_pred CCCCCCCEECCCCCCCCCCEEEECCCCEEEECCCEEECHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEE
T ss_conf 46687760336677744541664487224543741000433468999999984269778876655058770778984572
Q ss_pred EEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC-CE-EEC
Q ss_conf 33102366302245542368999987520000024443-4320244304320000112345672258982588-47-325
Q gi|254780445|r 443 RTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSG-KNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKG-EI-LLD 519 (963)
Q Consensus 443 r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~-k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~-~~-~~~ 519 (963)
|||+||||+||+ +++|++||++|++|+|+|+++ ++||.+||+||+||||||||+||+|||+|+||++ ++ ++.
T Consensus 468 RAt~QWF~~~D~-----~~~k~~~L~~i~~v~W~P~~~k~~R~~~~~~n~~DWcISRQR~WG~PIP~w~~e~~~~~~l~~ 542 (938)
T TIGR00392 468 RATEQWFIKIDE-----KKIKDQMLEEIKKVKWVPEWGKEGRFKNWLENRKDWCISRQRYWGVPIPVWYCEDTGEPVLIV 542 (938)
T ss_pred ECCCCCEEECCH-----HHHHHHHHHHCCCEEECCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 047221466354-----777899998628327614632214678876116765263356258974068866788326776
Q ss_pred CCHHHHHHHHHH-HCCCCCCCCCCCHHCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCC
Q ss_conf 211244421222-1188743356401114-----688788755456642100003335454332222-----23334431
Q gi|254780445|r 520 KAINDRIIKTFK-DQGSDAWFSEGSRDFF-----LGDRASEPWIQSKDILDVWFDSACTHTILLGKD-----PKLAWPAD 588 (963)
Q Consensus 520 ~~~~~~i~~~~~-~~g~d~~~~~~~~~~~-----~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~~~-----~~~~~PaD 588 (963)
.++++|+.+.++ +.|++.||+...++.+ .+..|+..|+|++|||||||||||||+++.... +...+|||
T Consensus 543 ~gsi~el~~~~~~~~G~~~w~~d~~~~~~d~~~~~~~~g~~~y~r~~DvlDVWFDSGs~~~A~~~~~~~~~~~~~~~pAD 622 (938)
T TIGR00392 543 VGSIEELEELIEVEKGIDAWFEDLHKDLLDKITLESGSGGGEYRRVPDVLDVWFDSGSMPYAVLHYPFENEKFKEVFPAD 622 (938)
T ss_pred ECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEEEEECCCCHHHHHHHHCCCCCHHHCCCCCCE
T ss_conf 04089999999987256632223444457741345889984258712155451140011799863232100103578302
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHC--------CCCHHHHHH
Q ss_conf 002554442111245544433117--8400001303782621345300001234433366411--------367578878
Q gi|254780445|r 589 VYLEGSDQHRGWFQHSLLESCATR--GSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIIS--------ESGADVLRY 658 (963)
Q Consensus 589 ~~~eG~Dq~RgWF~s~ll~~~~~~--~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~--------~yGaD~lR~ 658 (963)
||+||+|||||||||||++|++++ |++|||+|++||||||++|+|||||+||||+|.++|+ +||||+|||
T Consensus 623 ~i~EG~DQ~RGWFySsl~~~~~~~nv~~~PYK~Vi~hGF~LDe~G~KMSKSlGNvV~P~~v~~G~~N~~~P~yGAD~LRl 702 (938)
T TIGR00392 623 FILEGSDQTRGWFYSSLLIGVALFNVGKAPYKNVITHGFTLDEKGRKMSKSLGNVVDPEKVINGDENLKLPKYGADILRL 702 (938)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 68603355532779999999998707885436345315488577854453258703859970884335887533048777
Q ss_pred HHHHC--CCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCC--CCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88717--8766554431025677764000001-100000--122444456--7310111278887543689999998898
Q gi|254780445|r 659 WAVNS--DYHDDQRLGKNIIQTNIDTYRKLRN-TIRWML--GMLAHDTGN--EPSLADMPALEQLMLHRLTELDQVVREA 731 (963)
Q Consensus 659 ~~~~~--~~~~d~~~~~~~l~~~~~~~~kl~N-t~rf~l--~~l~~~~~~--~~~~~~l~~~DkwiLskl~~~i~~v~~~ 731 (963)
||+++ +++.|++||+++++++.+.|+++|| |+||++ |||.++++. ..+..+++.+|||||++|++++++|+++
T Consensus 703 yv~~~P~~~~~Dl~~~~~~~~~v~~~~~~~~~N~~~Fl~~YanL~~f~p~~~~~~~~~~~~~Drw~L~~l~~l~~~v~~~ 782 (938)
T TIGR00392 703 YVASSPSDYWEDLRFSDEILKQVAEKYRKIRWNTYRFLLTYANLDKFDPEEKAVAVEKFRELDRWILSRLNSLVEEVNEA 782 (938)
T ss_pred HHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78846874000220066899999998768899999999998876077873002311203011399999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC--
Q ss_conf 765401226688998786302400101020122278998089999999999999999999700044899999986388--
Q gi|254780445|r 732 YDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNP-- 809 (963)
Q Consensus 732 ~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~-- 809 (963)
||+|+|++++++|++||++||||||||++|||+|++..++..|++||+||+++|.+|+++||||+||+||++|++|..
T Consensus 783 ~e~Y~f~~~~~~l~~F~~~~LS~wY~~~~rdr~y~~~~~~~~rr~~q~tL~~~l~~l~~~lAP~~Ph~ae~~y~~l~~~~ 862 (938)
T TIGR00392 783 LEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYIEAKDNDKRRAAQTTLYYALLTLVKLLAPILPHTAEEIYQNLKGEK 862 (938)
T ss_pred HHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 62632467888898763120004566665434225789817899999999999999999870115799999986424010
Q ss_pred --------CCCCEEECCCCCCCHHHCCHHHHHH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf --------6773453358899835689899999-------99999999999999999997389997444038998
Q gi|254780445|r 810 --------EAVSVHLELFPIIPLEWQNACLSKK-------WGKILQLRKVVTSALEIERKAKHIGSSLETAPTLY 869 (963)
Q Consensus 810 --------~~~SI~~~~wP~~~~~~~d~~le~~-------~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~ 869 (963)
+.+|||+.+||.++++.++..++.. ++.++++|+.++..++.+|+++.|++++|+.+.+.
T Consensus 863 ~~~l~~~~~~~sv~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~l~~p~~e~~I~~~~e~~~~~~ 937 (938)
T TIGR00392 863 PELLKYEEDEESVHLNDWPEVDEEFIDEALEASMAIVREIVEAFLALRDAANKKLRQPLKELVIGKSLEAVLKAV 937 (938)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEEC
T ss_conf 223002678775023667663145544788888999999999999988999999998874673034665342103
No 5
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1870.95 Aligned_cols=837 Identities=28% Similarity=0.498 Sum_probs=746.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98889968977999999986476144540568888489962822558897621577856687899876708982678888
Q gi|254780445|r 20 FPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPG 99 (963)
Q Consensus 20 Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~G 99 (963)
-|||+||+++|++||++|+++++|++..+.++++|+|+||||||||||.|||||++|+|+||+++||+||+||+|+||||
T Consensus 1 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~~~dgPPy~nG~lHiGH~~~~tikDii~Ry~rm~G~~V~~~~G 80 (1042)
T PRK06039 1 VPSKPDFPAVEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPFANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 80 (1042)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98999988988999999986899246300069999789967899878872143668789999999998738996689897
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 24442089999999876559983-34899999999999999999999999997060776369811577679899999999
Q gi|254780445|r 100 WDCHGLPIEWKVENEYLAKGKKK-DDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELL 178 (963)
Q Consensus 100 wD~hGLPiE~~vek~l~~~~~~~-~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~ 178 (963)
|||||||||++|||+|+.+++.. .++|+++|+++||++|.++++.|++||+|||+|+||+|+|.||||.|++.+||+|+
T Consensus 81 wD~hGLPiE~~vek~lgi~~k~~i~~~gi~~F~~~cr~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~e~v~~~F~ 160 (1042)
T PRK06039 81 WDTHGLPVELEVEKELGISGKKDIEKYGIEKFNEECRESVLRYTDEWEEYTERLGRWVDFDNPYKTMDNSYMESVWWALK 160 (1042)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHH
T ss_conf 48677899999999847667642655289999999999999999999999998182052689827689889999999999
Q ss_pred HHHHCCCEECCCCEEEECCCCCCCCCCHHH--EEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCC
Q ss_conf 999879611034302205743573650021--013210577999833037531122001100000057886544532277
Q gi|254780445|r 179 KIAESDQIYRGIKPIMWSIAEQTTLAEAEI--EYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSS 256 (963)
Q Consensus 179 ~l~~kGliyr~~~pV~w~p~~~T~La~~Ev--ey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p 256 (963)
+||+|||||||.+||+|||.|+|+|||+|| +|+|+.++++||+|++.+.. +.+++||||||||||||+|++|||
T Consensus 161 ~L~ekGliYrg~~~V~wcp~~~T~Lad~Ev~~~Y~~~~~~s~~vkF~l~~~~----~~~l~iwTTrPwTl~~n~avaV~P 236 (1042)
T PRK06039 161 QLYDKGLLYEGYRVVPYCPRCETPLSNHEVRQGYKEVKDPSVYVKFKLKGEE----NEYLLAWTTTPWTLPSNLALAVGP 236 (1042)
T ss_pred HHHHCCCEEECCCEECCCCCCCCCCHHHHHHCCCEEEECCEEEEEEEEECCC----CCEEEEECCCCCCCCCCEEEEECC
T ss_conf 9998799896271325489889881186730574441446499999975279----847998658875111135999868
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCC-CEEEEEECCCCCCCCCEEEECCCCC---CCCEEEECCCC
Q ss_conf 6745899830665311112374355121118888876098-5178410011111285754313786---65125511443
Q gi|254780445|r 257 NHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNV-KIALVCDVKAEDLSKTMCSHPLKKL---GYTFSVPLIDA 332 (963)
Q Consensus 257 ~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~-~~~~~~~~~g~~l~g~~~~~Pl~~~---~~~~~~pi~~~ 332 (963)
|++|+.++. ...++.||+|+++++.+..+... +.+++++++|++|+|+.|.||+... ...+.+||+.|
T Consensus 237 d~~Y~~v~~--------~~~~e~~i~a~~~~~~~~~~~~~~~~~v~~~~~G~~L~G~~y~~p~~~~~~~~~~~~~~Vi~~ 308 (1042)
T PRK06039 237 DIDYVKVRD--------KGGGEVYILAEALLEKVLKKEGGEEYEVLETFKGEELEGLRYEPPFPYFVPEDEENAFRVVAA 308 (1042)
T ss_pred CCCEEEEEE--------CCCCEEEEEEHHHHHHHHHHCCCCCEEEEEEEECHHHCCCEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 763699984--------489759998088899998551675407887751243078887788643236677874279954
Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22332244540564057898898998760521221002203430234455102431001786321135544456754523
Q gi|254780445|r 333 EYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIA 412 (963)
Q Consensus 333 d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~ 412 (963)
|||++++|||+||+|||||++||+ +++++||+++++||++|+|++++|+|+|++|++ |++.|++
T Consensus 309 d~V~~~~GTG~Vh~aPahg~~D~~---------~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~d-------a~~~Ii~ 372 (1042)
T PRK06039 309 DFVTTEDGTGIVHIAPAFGEDDFE---------VGKKYGLPVVCPVDDNGRFTEEVPDYAGKFVKD-------ADKEIIR 372 (1042)
T ss_pred CCCCCCCCCCEEEECCCCCHHHHH---------HHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEC-------CHHHHHH
T ss_conf 720578897428967889889999---------999839986663177553346443517936530-------2099999
Q ss_pred HHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCC
Q ss_conf 566479821000000122113210132033331023663022455423689999875200000244434-3202443043
Q gi|254780445|r 413 ALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGK-NRLRSMIENR 491 (963)
Q Consensus 413 ~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k-~r~~~~i~~~ 491 (963)
.|+++|.|++.++|.|+|||||||++|||+|+++||||+|+ .+|+++++++++|+|+|++++ +||.+||+|+
T Consensus 373 ~L~~~g~l~~~~~~~Hsyp~cwR~~~pli~~~~~QWFi~~~-------~~k~~~l~~~~~i~w~P~~~~~~rf~~wl~n~ 445 (1042)
T PRK06039 373 DLKERGLLFKAETYEHSYPHCWRCDTPLIYRAVESWFIRVT-------KIKDRMLELNQKINWYPEHIKDGRFGKWLENA 445 (1042)
T ss_pred HHHHCCCCCCCCCEECCCCCCCCCCCEEEEECCHHHHHHHH-------HHHHHHHHHHHCCEEECCCCCCCHHHHHHHHC
T ss_conf 99866752246633557874257798148633262776557-------67999999860214734523200699998636
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHCCCC--CCCCCCCHHC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 200001123456722589825884732521124442122211887--4335640111--468878875545664210000
Q gi|254780445|r 492 PDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSD--AWFSEGSRDF--FLGDRASEPWIQSKDILDVWF 567 (963)
Q Consensus 492 ~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g~d--~~~~~~~~~~--~~~~~~~~~~~r~~DvlDvWf 567 (963)
+|||||||||||||||+|+|++|+.+.....++.+.. ..+.. ...+.+..|. +++++|+..++|++|||||||
T Consensus 446 ~DW~ISRQR~WG~PIPvw~~~~~~~~~v~~s~~el~~---~~~~~~~~dlhrp~iD~v~~~~~~~~~~~~r~~DvlD~Wf 522 (1042)
T PRK06039 446 RDWAISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEE---DFGVPKPIDLHRPYIDEVTLPCPDCGTGMRRVPDVLDVWF 522 (1042)
T ss_pred CCHHHHCCCCCCCCCEEEEECCCCCEEECCCHHHHHH---HCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 3311000234577540699679996670286999987---6088883010245455056558998621030564212376
Q ss_pred CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCC
Q ss_conf 33354543322------222333443100255444211124554443311784000013037826213453000012344
Q gi|254780445|r 568 DSACTHTILLG------KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNV 641 (963)
Q Consensus 568 DSg~s~~~~~~------~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNv 641 (963)
|||++|++.++ +.++++||+|+|+||+||+||||||+|++++++++++|||+|++||||+|++|+|||||+||+
T Consensus 523 dSg~~p~a~~~~p~~~~~~f~~~~PaD~i~eg~Dq~RgWF~sl~~~s~~~~~~~Pfk~v~~~G~Vld~~G~KMSKS~GNv 602 (1042)
T PRK06039 523 DSGSMPYAQLHYPFENKELFEEHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVIVHGHVLDEDGQKMSKSLGNY 602 (1042)
T ss_pred ECCCCCEEEECCCCCCHHHHHCCCCCEEEEECCCHHEEEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCEECCCCCCCC
T ss_conf 35874406977864366666215864444523222101436000321223484200258995038736864803367886
Q ss_pred CCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHH-HHHHHHHHHHCCCCCCCC--CCCCCCCCCC--CCHHHHHHHHH
Q ss_conf 333664113675788788871-78766554431025-677764000001100000--1224444567--31011127888
Q gi|254780445|r 642 VFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNII-QTNIDTYRKLRNTIRWML--GMLAHDTGNE--PSLADMPALEQ 715 (963)
Q Consensus 642 i~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l-~~~~~~~~kl~Nt~rf~l--~~l~~~~~~~--~~~~~l~~~Dk 715 (963)
|+|.++|++||||++|||+++ +++++|++||++.+ +...+++++|||++||++ +|+.++++.. .+..+++.+||
T Consensus 603 idP~~vi~~yGADalRl~l~~~~~~~~d~~f~~~~v~e~~r~~~~~lwN~~rF~~~y~~ld~f~~~~~~~~~~~~~~~Dr 682 (1042)
T PRK06039 603 VDPFEVFDKYGADALRWYLLSSSVPWEDLRFSEDGIREVVRKFLLPLWNVYSFFALYANLDGFDPNEAEEALDSRNELDR 682 (1042)
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 89799988608279999999667755561577999999999999999999999987421027995435556321668789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 75436899999988987654012266889987863024001010201222789980899999999999999999997000
Q gi|254780445|r 716 LMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPI 795 (963)
Q Consensus 716 wiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi 795 (963)
||||+|++++++|+++|++|+|++|+++|++|+ ++|||||++++|+|+|++. ++..|++|++|||++|.++++|||||
T Consensus 683 Wils~l~~~i~~v~~~~~~y~~~~a~~~l~~Fi-~dLs~wYi~~~r~R~~~~~-~~~~k~~A~~tL~~vL~~l~~llAP~ 760 (1042)
T PRK06039 683 WILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKEE-DDPDKLAAYNTLYTVLETLSRLMAPF 760 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999997245999999999999-8877999999778760368-97899999999999999999996501
Q ss_pred HHHHHHHHHHHCCCC--CCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCH
Q ss_conf 448999999863886--773453358899835689899999999999999999999999973899974440389982968
Q gi|254780445|r 796 LPFTAEEAWLSLNPE--AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDS 873 (963)
Q Consensus 796 ~P~~aEEiw~~l~~~--~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~ 873 (963)
+||+||||||.|.++ .+|||++.||++++.++|++|++.|+.++++.+.++++++. ..-+++++|. .++|...++
T Consensus 761 ~PFitEeiyq~L~~~~~~eSVHl~~~P~~~~~~id~~le~~m~~~r~iv~~~r~~R~~--~~ikvRqPL~-~~~i~~~~~ 837 (1042)
T PRK06039 761 TPFIAEEIYQNLKGETGPESVHLADWPEVDESLIDPELEAAMDLVREIVSLGRSARKK--ANIKVRQPLS-RITVAVKDE 837 (1042)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCC-EEEEEECCH
T ss_conf 3676999998445589995179814677661214899999999999999999999987--5997666266-479994898
Q ss_pred HHHHHHC--CCCHHHHEEECEEEEECCC
Q ss_conf 9997722--1136551120416996377
Q gi|254780445|r 874 SLISNIE--GENLAEICITSDITIVHSN 899 (963)
Q Consensus 874 ~~l~~l~--~~~L~~~~ivS~v~i~~~~ 899 (963)
..+..+. .+.+++-++|-+|++....
T Consensus 838 ~~~~~~~~~~~~I~~ElNVk~v~~~~~~ 865 (1042)
T PRK06039 838 EVLEALEEYEDIIKDELNVKEVEFVDDE 865 (1042)
T ss_pred HHHHHHHHHHHHHHHHHCEEEEEEECCC
T ss_conf 9999999999999985283389997076
No 6
>KOG0433 consensus
Probab=100.00 E-value=0 Score=1722.76 Aligned_cols=893 Identities=33% Similarity=0.570 Sum_probs=805.1
Q ss_pred CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 76867601588899988899689779999999864761445405688884899628225588976215778566878998
Q gi|254780445|r 6 KANYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVR 85 (963)
Q Consensus 6 ~~~y~~tl~lPkt~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~R 85 (963)
+.-|+.|++|||| |+|+|...+|++.++.|+...+++...+.+ +++.|+||| |||.||||||+|||+|||+.|
T Consensus 14 ~~~Ys~T~~lpKt--~~r~n~~~r~~q~~k~~~~~~~~~~~l~~~-~~~~F~L~d----anG~lhlghAlnKILkdiinr 86 (937)
T KOG0433 14 PIHYSITSHLPKT--LVHFNSTGRIGQVIEVIQPPEILSSQLSDQ-QRVEFELKD----ANGNLHLGHALNKILKDIINR 86 (937)
T ss_pred CHHHCEECCCCCC--CCCCCCCCCHHHHHHHHCCHHHHHHHHHHC-CCCEEEEEC----CCCCCHHHHHHHHHHHHHHHH
T ss_conf 4110030369988--764453233788998835627788887642-687089864----889801677898999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEC
Q ss_conf 76708982678888244420899-99999876559983348999999999999999999999999970607763698115
Q gi|254780445|r 86 SFQMRNFNACFVPGWDCHGLPIE-WKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTT 164 (963)
Q Consensus 86 y~rm~G~~Vl~~~GwD~hGLPiE-~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T 164 (963)
|+.|+|++|+|+||||||||||| .+|.+.+.... .++++.|+|+++|.||.+.|+.|++.|+|||+++||+++|.|
T Consensus 87 ~~l~~g~~v~yvPGWDCHGLPIEs~Kals~l~~~~---~~~spleiR~kAr~fA~~AIk~Q~e~F~r~gv~aDW~npY~T 163 (937)
T KOG0433 87 ILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE---GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVT 163 (937)
T ss_pred HHHHCCCEECCCCCCCCCCCCHHHHHHHHHCHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEE
T ss_conf 99974874425789876887368778755321211---467818999999999999999999998875011057883062
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE-EECCEEEEEEEECCCCC-------CCCCCCC
Q ss_conf 776798999999999998796110343022057435736500210132-10577999833037531-------1220011
Q gi|254780445|r 165 MTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD-VDSDSILVGFPVKSSAD-------YLIKSQI 236 (963)
Q Consensus 165 ~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d-~~~~s~~v~F~l~~~~~-------~~~~~~~ 236 (963)
|+|+|++.|+.+|.+||+||||||+.|||+|||+++|||||+|+||.| +.|+|+|++|||..... ....+|+
T Consensus 164 ~~~~yeaaQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~iya 243 (937)
T KOG0433 164 KSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYA 243 (937)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEECCCCCCEECCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 38077899999999998666133057760136753125556431578677551489998636776221257776674799
Q ss_pred CHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 00000057886544532277674589983066531111237435512111888887609851784100111112857543
Q gi|254780445|r 237 VIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSH 316 (963)
Q Consensus 237 ~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~g~~l~g~~~~~ 316 (963)
+||||||||||+|.||++||+++|++++... ....+.++||.++.+.+....+.+.+++++++|..|.|.+|.|
T Consensus 244 LVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~------~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~h 317 (937)
T KOG0433 244 LVWTTTPWTLPSNNAISVNSAIQYSLVQFDN------NPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKH 317 (937)
T ss_pred EEEECCCCCCCCCCEEEECCCCCEEEEEECC------CCCCEEEEECCCHHHHHHHHCCCCEEEEEECCHHHCCCCEECC
T ss_conf 9984787545466413532334058999236------7766599970010666653138643453003622315762368
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCC-CCCCCC
Q ss_conf 1378665125511443223322445405640578988989987605212210022034302344551024310-017863
Q gi|254780445|r 317 PLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAP-GFSGAR 395 (963)
Q Consensus 317 Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~-~~~G~~ 395 (963)
|+.. +...|++.|+||+++.|||+||+|||||++||. ++.++||++.|+||++|+||.+++ .+.|+.
T Consensus 318 pl~~---~~~~P~l~g~hVT~~~GTGLVHTAPaHG~eDYl---------v~l~~gl~~~s~VD~~G~yT~ea~~~l~Gk~ 385 (937)
T KOG0433 318 PLHN---ELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYL---------VAISKGLRVESFVDSRGCYTREAGHDLDGKE 385 (937)
T ss_pred CCCC---CCCCCCCCCCCEECCCCCCEEECCCCCCHHHHH---------HHHHCCCCCCCCCCCCCCEECCCCCCCCCCH
T ss_conf 6765---568864246633047566204417877748777---------7764399766655777713401464125611
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 21135544456754523566479821000000122113210132033331023663022455423689999875200000
Q gi|254780445|r 396 VLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRF 475 (963)
Q Consensus 396 v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~ 475 (963)
|++ ++++.|+..|. +.+++.++|+|||||+||||+|||+||++||||+++. +|..|.+++++|+|
T Consensus 386 VL~------eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~-------~k~~A~~al~~Vk~ 450 (937)
T KOG0433 386 VLG------EGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEE-------IKKRASMALDDVKV 450 (937)
T ss_pred HHC------CCCHHHHHHHH--HHHHHHHCCCCCCCCCCCCCCCEEEECCHHHEEEHHH-------HHHHHHHHHHHCEE
T ss_conf 232------63076999986--5455201023258865455896599506155024775-------50689998851243
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCC-CCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCC--
Q ss_conf 24443432024430432000011234567225898258-847325211244421222118874335640111468878--
Q gi|254780445|r 476 FPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEK-GEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRA-- 552 (963)
Q Consensus 476 ~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~-~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~-- 552 (963)
+|..+.+|+..++..|++|||||||.||+|||++|... +++++...+..|+...++++|+|+||..+..++++...-
T Consensus 451 ~P~~~~~rl~~~~~~Rp~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e 530 (937)
T KOG0433 451 APGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVRE 530 (937)
T ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCEEECCHHHHCCHHHHCC
T ss_conf 78630889999971797405532101588520578548983512589999999999871876327678567170766301
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEC
Q ss_conf ----8755456642100003335454332222233344310025544421112455444331178400001303782621
Q gi|254780445|r 553 ----SEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVD 628 (963)
Q Consensus 553 ----~~~~~r~~DvlDvWfDSg~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld 628 (963)
..++.|++||||||||||+||.+++.+ +...+||+|+||+|||||||||+||+++|..+++|||+|++|||++|
T Consensus 531 ~~d~a~ey~kgtDimDVWFDSGssWs~v~~~--~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlD 608 (937)
T KOG0433 531 IPDIASEYKKGTDIMDVWFDSGSSWSAVLDN--EREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLD 608 (937)
T ss_pred CCHHHHHHCCCCCEEEEEECCCCCCEEECCC--CCCCCEEEEEECCHHCCHHHHHHHHHHHHHHCCCCCHHEEEEEEEEC
T ss_conf 3116887436883166676288851000478--88750006884412012378999999998724687232156203766
Q ss_pred CCCCCHHCCCCCCCCHHHHHCC------CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 3453000012344333664113------6757887888717876655443102567776400000110000012244445
Q gi|254780445|r 629 ENGEKMSKSKGNVVFPEEIISE------SGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTG 702 (963)
Q Consensus 629 ~~G~KMSKS~GNvi~p~~ii~~------yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~ 702 (963)
|+|.|||||+||||||..++++ ||||+||||+|+++...|+.+++.++.++.+.+.|+|||+||++||+.++++
T Consensus 609 E~G~KMSKSlGNVidP~~vi~G~~k~payGaD~LR~WVA~s~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~ 688 (937)
T KOG0433 609 ENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDG 688 (937)
T ss_pred CCCCCHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 77542100226757889984775668875641001344235555751028899999999999997577988504112477
Q ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf 6--73101112788875436899999988987654012266889987863024001010201222789980899999999
Q gi|254780445|r 703 N--EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAV 780 (963)
Q Consensus 703 ~--~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~ 780 (963)
. ..+..++..+|+++|.+|+.+++++++.|++|+|+++++.|..|++++||++||+++||||||+..+|..||+||+|
T Consensus 689 ~~~~~p~~dl~~iDqy~L~ql~~~~~~i~elY~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~Qtt 768 (937)
T KOG0433 689 KQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTT 768 (937)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 65510010322324999999999999999999851589999999999997766789998766530588886888899999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHCCHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999997000448999999863886773453358899835689899999--999999999999999999973899
Q gi|254780445|r 781 IRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKK--WGKILQLRKVVTSALEIERKAKHI 858 (963)
Q Consensus 781 L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~~~wP~~~~~~~d~~le~~--~~~l~~ir~~V~~~le~~R~~k~I 858 (963)
|++++..+++.+|||+||++||+||+++...+-+|...||.....|.....+.. |..+++++....+.++.++..+.+
T Consensus 769 L~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~~~~fr~k~~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~ 848 (937)
T KOG0433 769 LHHLLHNLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKK 848 (937)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999734317889999974878788652247652463433851677799999999987677777764312200
Q ss_pred CCCCCEEEEEEECCHHHHHHHCCCCHHHHEEECEEEEECCCCCC--CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 97444038998296899977221136551120416996377753--3201236786289998178852852175467447
Q gi|254780445|r 859 GSSLETAPTLYITDSSLISNIEGENLAEICITSDITIVHSNGPT--DAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVG 936 (963)
Q Consensus 859 ~~slea~v~i~~~d~~~l~~l~~~~L~~~~ivS~v~i~~~~~~~--~~~~~~~~~~~~v~v~~a~~~KC~RCW~~~~~v~ 936 (963)
+++|++.+.+... .+.+.+|.+++.+|++.+....... +.......-+.......|.++||+|||+++...
T Consensus 849 ~s~L~~~~~~ht~------~~~~~~L~~~l~~~~~~~~~~~~~~~~~~vE~~~~~~~~~~~~ra~~~~c~rcw~~~~~~- 921 (937)
T KOG0433 849 GSVLQVTPEYHTI------RIYESELPELLNVSQVILHENRDENSVELVESRLRYCERCRKHRATFSRCVRCWDLRKQD- 921 (937)
T ss_pred CCEEEEEEEECCC------CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC-
T ss_conf 5458998765033------210667888987740004655113206888756678899999875104567877632568-
Q ss_pred CCCCCCCCCHHHHHHHHHC
Q ss_conf 8856353037889996326
Q gi|254780445|r 937 LDASYPDVSARDAAVLHEL 955 (963)
Q Consensus 937 ~~~~~~~lC~RC~~vl~~~ 955 (963)
+.||.||.+++.++
T Consensus 922 -----~~lc~rc~~~~~~~ 935 (937)
T KOG0433 922 -----PPLCLRCQDLRFQD 935 (937)
T ss_pred -----CCCCCHHHHHHHHC
T ss_conf -----76330679988521
No 7
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1701.65 Aligned_cols=775 Identities=27% Similarity=0.434 Sum_probs=707.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99888996897799999998647614454056888848996282255889762157785668789987670898267888
Q gi|254780445|r 19 DFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVP 98 (963)
Q Consensus 19 ~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~ 98 (963)
..|.++|+.++|++||++|+++++|++ +.++++|+|+|++||||+||.|||||++|+|++|+++||+||+||+|+|+|
T Consensus 2 e~~~~Y~~~~iE~k~~~~W~~~~~f~~--~~~~~~~~f~~~~pPP~~~G~lHiGHa~~~~i~D~i~Ry~rm~G~~V~~~p 79 (877)
T PRK05729 2 ELPKTYDPKEVEAKWYQKWEEKGYFKP--DGDKSKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLP 79 (877)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 885789939999999999985799737--877899977997288988798612166748899999999872799668889
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHH
Q ss_conf 82444208999999987655998334899999999999999999999999997060776369811577679899999999
Q gi|254780445|r 99 GWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELL 178 (963)
Q Consensus 99 GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~ 178 (963)
||||||||+|.+||++|+..|+++.++++++|++.|++|+.++.+.+++||+|||+|+||+|+|+||||.|+++++|+|.
T Consensus 80 G~D~~Gl~~e~~vek~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~i~~q~~rlG~s~Dw~~~~~T~d~~~~~~v~~~F~ 159 (877)
T PRK05729 80 GTDHAGIATQMVVERQLAAEGKTRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASVDWSRERFTMDEGLSKAVREVFV 159 (877)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 86888605689999999874998354489999999999999999999999998286033589845589889999999999
Q ss_pred HHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 99987961103430220574357365002101321057799983303753112200110000005788654453227767
Q gi|254780445|r 179 KIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNH 258 (963)
Q Consensus 179 ~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~ 258 (963)
+||++||||||.+||+|||.|+||||++||+|+|+.++++||+|++.+.. .+++||||||||||||+||+|||+.
T Consensus 160 ~L~~kGliyr~~~~V~wcp~~~Tals~~EV~~~~~~~~~~~ikf~l~~~~-----~~l~i~TTrPeTl~~~~avav~P~d 234 (877)
T PRK05729 160 RLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGS-----DYLVVATTRPETMLGDTAVAVNPED 234 (877)
T ss_pred HHHHCCCEEECCEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCC-----CEEEEECCCCCCCCCCEEEEECCCC
T ss_conf 99988997841312366887788435678732456673389841324788-----7476501685234464578846887
Q ss_pred CEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCC
Q ss_conf 45899830665311112374355121118888876098517841001111128575431378665125511443223322
Q gi|254780445|r 259 QYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVAND 338 (963)
Q Consensus 259 ~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~ 338 (963)
+ ++++|+|+++.||+++ +.+||++++||+++
T Consensus 235 e---------------------------------------------ry~~l~Gk~~~~P~~~----~~ipii~d~~V~~~ 265 (877)
T PRK05729 235 E---------------------------------------------RYKHLIGKKVILPLVG----REIPIIADEYVDPE 265 (877)
T ss_pred H---------------------------------------------HHHHHCCCEEEECCCC----CEEEEEECCCCCCC
T ss_conf 4---------------------------------------------8898559889805889----75328715752677
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 44540564057898898998760521221002203430234455102431001786321135544456754523566479
Q gi|254780445|r 339 CGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINAC 418 (963)
Q Consensus 339 ~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g 418 (963)
+|||+||+|||||++||+ ++++++|+++++||++|+|++++++|.|+.+++ |+++|++.|+++|
T Consensus 266 ~GTG~V~~~Pah~~~D~~---------~~~~~~L~~~~~id~~G~~~~~~~~~~G~~~~~-------ar~~Ii~~L~~~g 329 (877)
T PRK05729 266 FGTGAVKITPAHDFNDFE---------VGKRHNLPMINIMDEDGTINENAGEYQGLDRFE-------ARKAIVADLEELG 329 (877)
T ss_pred CCCCCEEECCCCCHHHHH---------HHHHCCCCCCCCCCCCCCCCCCCHHCCCCCHHH-------HHHHHHHHHHHCC
T ss_conf 784617971689978999---------887648874346566764045741029970889-------8899999999779
Q ss_pred CCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH--CCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 82100000012211321013203333102366302245542368999987520--0000244434320244304320000
Q gi|254780445|r 419 AILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIENRPDWLL 496 (963)
Q Consensus 419 ~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~--~v~~~P~~~k~r~~~~i~~~~DW~I 496 (963)
.|++.+.|+|+|||||||++||++|+++||||+|++ ++++++++++ +|+|+|+++++++.+||+|++||||
T Consensus 330 ~l~~~~~~~h~~p~~~R~~~pi~~~~~~QWFi~~~~-------l~~~~l~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcI 402 (877)
T PRK05729 330 LLVKIEPHKHSVGHSDRSGVVIEPYLSDQWFVKMKP-------LAKPALEAVEDGKIKFVPKRWENTYFHWMENIQDWCI 402 (877)
T ss_pred CEEEEEECCCCCCCCCCCCCEEEEECCCCCEECCCH-------HHHHHHHHHHCCCCEECCHHHHHHHHHHHHCCCCCCC
T ss_conf 977432135678754677856997413010000335-------7999999860588312577888499998605655511
Q ss_pred CCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11234567225898258847325211244421222118874335640111468878875545664210000333545433
Q gi|254780445|r 497 SRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTIL 576 (963)
Q Consensus 497 SRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~ 576 (963)
|||||||||||+|||++|+.++..... ..++.+.+..+.|++||||||||||++++++
T Consensus 403 SRqr~WG~piPvw~~~~~~~~v~~~~~----------------------~~~~~~~~~~~~~d~DVlDtWFsSgl~p~s~ 460 (877)
T PRK05729 403 SRQLWWGHRIPAWYDEDGEVYVGRTEP----------------------EARAKAGSENLTQDEDVLDTWFSSALWPFST 460 (877)
T ss_pred CCCCCCCCCEEEEECCCCCEEECCCHH----------------------HHHHHCCCCCCEECCCCCCCHHHCCCCCCCC
T ss_conf 355446884258991898489416756----------------------6443238765255653223344316666441
Q ss_pred CC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCC
Q ss_conf 22-----2223334431002554442111245544433117840000130378262134530000123443336641136
Q gi|254780445|r 577 LG-----KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651 (963)
Q Consensus 577 ~~-----~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~y 651 (963)
++ .++++|||+|++++|.||+||||++|++.+.++.+++|||+|++||||+|++|+|||||+||||+|.++|++|
T Consensus 461 lg~p~~~~~~~~~~P~d~~~~G~Dii~fWv~rm~~~~~~~~~~~Pfk~v~~hG~v~D~~G~KMSKS~GNvidP~~vi~~y 540 (877)
T PRK05729 461 LGWPDKTPDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKY 540 (877)
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCHHEEEEEEEECCEEEECCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf 66865205442478875452065521134444431032011237611020044378898877878788989989999871
Q ss_pred CHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75788788871-78766554431025677764000001100000122444456-73101112788875436899999988
Q gi|254780445|r 652 GADVLRYWAVN-SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGN-EPSLADMPALEQLMLHRLTELDQVVR 729 (963)
Q Consensus 652 GaD~lR~~~~~-~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~-~~~~~~l~~~DkwiLskl~~~i~~v~ 729 (963)
|||+||||+++ +++++|++|+++.+++.+++++||||++||+++|+...... ......++.+|+|||++|++++++++
T Consensus 541 GaDalR~~l~~~~~~g~di~~~~~~v~~~r~f~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~~D~WIlskL~~~i~~v~ 620 (877)
T PRK05729 541 GADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGQDPGFLPDEAELSLADRWILSRLNRTVAEVT 620 (877)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 91999999997077676600068999999999999999999999724656644456621067879999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 98765401226688998786302400101020122278998089999999999999999999700044899999986388
Q gi|254780445|r 730 EAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNP 809 (963)
Q Consensus 730 ~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~ 809 (963)
++|++|+|+.|++.|++|++++||+||++++|+|+|++ ++..|+++++||+.||+.+++||||||||+|||||+.|++
T Consensus 621 ~~~~~y~f~~a~~~ly~F~w~d~cdwYlE~~K~rl~~~--~~~~~~~~~~~L~~vL~~~L~lLhPfmPFitEElwq~L~~ 698 (877)
T PRK05729 621 EALDKYRFDEAAQALYEFIWNEFCDWYLELAKPVLNGG--DEAAKRGTRATLAYVLEEILRLLHPFMPFITEELWQKLAP 698 (877)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 75000209999999999846755789999979977088--7788999999999999999998560135759999985778
Q ss_pred CCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHC--CCCHHHH
Q ss_conf 67734533588998356898999999999999999999999999738999744403899829689997722--1136551
Q gi|254780445|r 810 EAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIE--GENLAEI 887 (963)
Q Consensus 810 ~~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~~~l~~l~--~~~L~~~ 887 (963)
+++|||++.||+.+..+.|..+++.++.++++...|++ .|++.+|..+....+.+...+......+. ...++.+
T Consensus 699 ~~~si~~~~wP~~~~~~~d~~~e~~~~~~~eiI~~iRs----~R~e~nI~~k~~l~v~i~~~~~~~~~~l~~~~~~I~~L 774 (877)
T PRK05729 699 EGESIMLAPWPEADEALIDEAAEADFEWLKELITAIRN----IRAEMNIPPSKKLPLLLKGADAEDRARLERNEAYIKRL 774 (877)
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 89746863799997100798999999999999999999----99972989898205999729889999999989999998
Q ss_pred EEECEEEEECCCC
Q ss_conf 1204169963777
Q gi|254780445|r 888 CITSDITIVHSNG 900 (963)
Q Consensus 888 ~ivS~v~i~~~~~ 900 (963)
..++.+++.....
T Consensus 775 a~~~~i~~~~~~~ 787 (877)
T PRK05729 775 ARLESIEILAEGE 787 (877)
T ss_pred HCCCEEEECCCCC
T ss_conf 5877068657777
No 8
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1674.54 Aligned_cols=810 Identities=25% Similarity=0.407 Sum_probs=722.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC--EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 988899689779999999864761445405688884--899628225588976215778566878998767089826788
Q gi|254780445|r 20 FPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKN--FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFV 97 (963)
Q Consensus 20 Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~--f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~ 97 (963)
+|-++|+.++|.+||+.|++.++|+..-+.+...|. |++..||||++|.||||||||-+|.|+++|||||+||+|||+
T Consensus 1 ~~~~Y~P~~vE~~~Y~~W~~~~~F~~~~~~~~~~~~~~f~i~~PPPNvTG~LH~GHAl~~~l~D~l~RykRM~G~~vLw~ 80 (970)
T TIGR00422 1 MPKDYDPKEVEKKLYDKWEKSGFFKPDGNSNKKVEPKRFCIVIPPPNVTGSLHIGHALNWSLQDILARYKRMKGYNVLWL 80 (970)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98888776777999999872785022686446537775157178258555511668999999999998542178712578
Q ss_pred CCCCCCCCHHHHHHHHHHHHC---CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHH
Q ss_conf 882444208999999987655---99833489999999999999999999999999706077636981157767989999
Q gi|254780445|r 98 PGWDCHGLPIEWKVENEYLAK---GKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIA 174 (963)
Q Consensus 98 ~GwD~hGLPiE~~vek~l~~~---~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~ 174 (963)
|||||||||+|.+||+++..+ |+++.++|+++|+++|++|+.++++.+++|++|||+|+||+|+++||||.|.+.|+
T Consensus 81 ~G~DHAGIATQ~~vE~~~~~~~ikgK~k~D~gRe~F~~~~~ewk~e~~~~I~~Q~~rLG~S~DWsrE~FTmd~~l~~~V~ 160 (970)
T TIGR00422 81 PGTDHAGIATQVKVEKKLKAEEIKGKTKHDLGREEFVEKIWEWKEESGGTIKNQIKRLGVSLDWSRERFTMDEGLSKAVK 160 (970)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHH
T ss_conf 88665763246899999876225788778788689999999999887799999999808850235004544888888999
Q ss_pred HHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHH---EEEE-EECCEEEEEEEECCCC-CCCCCCCCCHHCCHHHHHHHH
Q ss_conf 9999999879611034302205743573650021---0132-1057799983303753-112200110000005788654
Q gi|254780445|r 175 SELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEI---EYHD-VDSDSILVGFPVKSSA-DYLIKSQIVIWTTTPWTIPGN 249 (963)
Q Consensus 175 ~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Ev---ey~d-~~~~s~~v~F~l~~~~-~~~~~~~~~iwTTrP~Tl~~n 249 (963)
.+|++||++||||||.+||||||+|+||+|+.|| ||++ +.+...||+|||.+.. ....+.+|+|||||||||+|+
T Consensus 161 ~~Fv~LY~~GLIYRg~~lVNWdpk~~TAiSd~EVenkeyker~~~~L~y~~Ypla~~~~~~~Gkd~l~vATTRPETm~gD 240 (970)
T TIGR00422 161 EAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVENKEYKERVKGKLYYIRYPLANGSKTADGKDYLVVATTRPETMFGD 240 (970)
T ss_pred HHHHHHHHCCCEEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCHHHHHC
T ss_conf 99998855486154361137205446310233332111312226654515654348875423552079972672256428
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEECCC-CCCCCCEEEECCCCCCCCEEEE
Q ss_conf 453227767458998306653111123743551211188888760985178410011-1112857543137866512551
Q gi|254780445|r 250 RAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKA-EDLSKTMCSHPLKKLGYTFSVP 328 (963)
Q Consensus 250 ~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~g-~~l~g~~~~~Pl~~~~~~~~~p 328 (963)
|||+|||+ +.++ ++|+|+++++||++ +.+|
T Consensus 241 tAvaVhP~---------------------------------------------DeRYYk~L~GK~v~~PL~~----r~ip 271 (970)
T TIGR00422 241 TAVAVHPE---------------------------------------------DERYYKHLIGKKVILPLTG----RKIP 271 (970)
T ss_pred EEEEECCC---------------------------------------------CCHHHHHHCCCEEEECCCC----CEEE
T ss_conf 28876789---------------------------------------------7045785549889724567----6843
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE-EEEECCCCCCCCCCCC--------------CCCCC
Q ss_conf 14432233224454056405789889899876052122100220-3430234455102431--------------00178
Q gi|254780445|r 329 LIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI-KVPSPVDGRGFYTTEA--------------PGFSG 393 (963)
Q Consensus 329 i~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l-~~~~~vd~~G~~~~~~--------------~~~~G 393 (963)
|+.++||++++|||||+++||||+.||+ ++++|+| +.++.+|++|.+++++ ++|.|
T Consensus 272 iiaDe~VD~EFGTG~VKvTPAHD~ND~~---------~g~RH~LLe~i~~l~~dG~Lne~a~~~~tG~~~~Y~iP~~y~G 342 (970)
T TIGR00422 272 IIADEYVDMEFGTGAVKVTPAHDFNDYE---------VGKRHNLLEFINILDEDGLLNENAEVIDTGKEDVYAIPGEYQG 342 (970)
T ss_pred EECCCCCCCCCCCCEEEEECCCCCCCHH---------HCCEECCCCHHHHCCCCCCCCCEECEEECCCCCCCCCCHHCCC
T ss_conf 7617754624175127760874977600---------1341211414333179975011001100777233106522058
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHC-
Q ss_conf 6321135544456754523566479821000000122113210132033331023663022455423689999875200-
Q gi|254780445|r 394 ARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEK- 472 (963)
Q Consensus 394 ~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~- 472 (963)
|.+++ ||++|++.|++.|.|++.+.++|++|||||||+||++.+++||||++.+ +++.|++++++
T Consensus 343 L~~~e-------AR~kiv~~L~~~glL~k~~p~~~~VG~c~Rsg~vvEP~ls~QWFV~~~~-------La~~a~~~~~~~ 408 (970)
T TIGR00422 343 LERFE-------ARKKIVEDLKEEGLLVKIEPHTHNVGHCERSGTVVEPLLSKQWFVKVEK-------LADKALEAAEED 408 (970)
T ss_pred CCHHH-------HHHHHHHHHHHCCCCCCCCEECCCCCEECCCCCEEECCCCCCCEECHHH-------HHHHHHHHHHHC
T ss_conf 88899-------9999999998668800111000345621478934304269986217177-------789999998545
Q ss_pred --CCCCCCCCCCCHHHHHHCCC-CCCCCCCCCCCCCEEEEE--------CC-CCCEEECCCHHHHHHHHHHHCCCCCCCC
Q ss_conf --00024443432024430432-000011234567225898--------25-8847325211244421222118874335
Q gi|254780445|r 473 --IRFFPSSGKNRLRSMIENRP-DWLLSRQRNWGVPICFFY--------NE-KGEILLDKAINDRIIKTFKDQGSDAWFS 540 (963)
Q Consensus 473 --v~~~P~~~k~r~~~~i~~~~-DW~ISRqR~WG~PIPi~~--------~e-~~~~~~~~~~~~~i~~~~~~~g~d~~~~ 540 (963)
++|+|++..+++.+||.+++ ||||||||+||||||+|| |. +|++++..+......+. +.|
T Consensus 409 g~~~fvP~~~~~~y~~W~~~~~WDWCISRQL~WGH~IPvWY~~~E~~~~~~~~G~~~V~~~~~~~~~~~--~~g------ 480 (970)
T TIGR00422 409 GEIKFVPKRFEKRYLNWLRNIRWDWCISRQLIWGHRIPVWYVEIEGEEDHKETGEVYVAKEEALPDSKT--NTG------ 480 (970)
T ss_pred CCCEEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCHH--CCC------
T ss_conf 883360216788999999638888133010202645766775135777676411477478776410110--167------
Q ss_pred CCCHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 64011146887887-55456642100003335454332222----------23334431002554442111245544433
Q gi|254780445|r 541 EGSRDFFLGDRASE-PWIQSKDILDVWFDSACTHTILLGKD----------PKLAWPADVYLEGSDQHRGWFQHSLLESC 609 (963)
Q Consensus 541 ~~~~~~~~~~~~~~-~~~r~~DvlDvWfDSg~s~~~~~~~~----------~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~ 609 (963)
...+|++|+.. .+++++||||||||||++++.+++.. ++.+||+|+.++|.||+|||+.+|+|.|.
T Consensus 481 ---p~~~c~~CG~~f~l~qd~DVLDTWFSS~LWPfs~lGWpqekG~~~~~D~~~fyPt~~L~TG~DIiFFWV~RMi~~~~ 557 (970)
T TIGR00422 481 ---PKEVCDKCGSVFELEQDEDVLDTWFSSSLWPFSTLGWPQEKGDETEKDLKKFYPTDLLVTGYDIIFFWVARMILRSL 557 (970)
T ss_pred ---CCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---68766345874234348775453232344588746886445677668897338876565303688999999986215
Q ss_pred HCCC------CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHC----------------------------------
Q ss_conf 1178------400001303782621345300001234433366411----------------------------------
Q gi|254780445|r 610 ATRG------STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIIS---------------------------------- 649 (963)
Q Consensus 610 ~~~~------~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~---------------------------------- 649 (963)
.+.| +.|||.|++||||+|++|||||||+||||||.|+|+
T Consensus 558 ~~tgDEnGkP~~PFk~v~ihGLVRDeqG~KMSKSlGNvIdP~d~I~GI~L~dL~~K~~~~~l~P~~~eK~~~~~~~~fpn 637 (970)
T TIGR00422 558 ALTGDENGKPQVPFKDVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEGISLDDLLEKRTGNMLQPQLAEKIKKGTKKSFPN 637 (970)
T ss_pred HHHCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 54013586988782025865445558885122205683476986068870789999745777835899987643210323
Q ss_pred ---CCCHHHHHHHHHH-CC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHH
Q ss_conf ---3675788788871-78-7665544310256777640000011000001224444----5673101112788875436
Q gi|254780445|r 650 ---ESGADVLRYWAVN-SD-YHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDT----GNEPSLADMPALEQLMLHR 720 (963)
Q Consensus 650 ---~yGaD~lR~~~~~-~~-~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~----~~~~~~~~l~~~DkwiLsk 720 (963)
+|||||||||+|+ +. +|+|++|+..-++...+|.|||||+.||.|+++.+.. ........++.+|||||||
T Consensus 638 GI~~YGaDALR~~La~~~~G~G~Di~f~~~~v~~~~nF~NKlWNA~rF~l~~~~~~~~~~~~~~~~~~~~~l~drWILs~ 717 (970)
T TIGR00422 638 GIPKYGADALRFTLASLVTGPGDDINFDWKRVESARNFANKLWNASRFVLMNLSDDTQDELELSGGEEKLSLADRWILSK 717 (970)
T ss_pred CCHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 20020603899999835867898642118988767677678899999999600356676113577632013546999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 89999998898765401226688998786302400101020122278998089999999999999999999700044899
Q gi|254780445|r 721 LTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTA 800 (963)
Q Consensus 721 l~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~a 800 (963)
|+++++.+++++++|+|+.|.+.|++|+|+|+|+||+|++|.++|.+. +...+++|+.+|+.+|+.+++||||||||+|
T Consensus 718 L~~~i~~v~~~ld~Y~F~~a~~~ly~F~W~dFCD~YIE~~K~~~~~~~-~~~~k~~A~~~L~~vLd~~l~LLhPf~PF~t 796 (970)
T TIGR00422 718 LNRTIKEVREALDKYRFNEAAKALYEFIWNDFCDWYIELVKYRLYNGN-DEAEKKAARDTLAYVLDKALRLLHPFMPFIT 796 (970)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 999999999988403677887576521013451235442143147897-3899999999999999999998524552257
Q ss_pred HHHHHHCCCC-CCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCH-HHHHH
Q ss_conf 9999863886-773453358899835689899999999999999999999999973899974440389982968-99977
Q gi|254780445|r 801 EEAWLSLNPE-AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDS-SLISN 878 (963)
Q Consensus 801 EEiw~~l~~~-~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~-~~l~~ 878 (963)
|||||++... .+|||++.||.+..+..|.++++.++.+.++...||. .|++.+|..+.+..+.+...+. +....
T Consensus 797 E~iwq~~~~~~~~si~~~~yP~~~~~~~D~~~~~~~~~~~~~i~~~R~----~k~~~~~~~~~~l~~~~~~~~~~~~~~~ 872 (970)
T TIGR00422 797 EEIWQHLKEGEADSIMLQSYPEVDAEFVDEEAEKAFELLKEIIVSIRN----LKAESNIPPNAPLKVLLKYEEAEETAER 872 (970)
T ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEEEECCCHHHHHHH
T ss_conf 899988436101042213576523341577568889999999999988----8987067867656898842605799998
Q ss_pred HC--CCCHHHHEEECEEEEECCCCC-CCCCCCCCCCCEEEEE
Q ss_conf 22--113655112041699637775-3320123678628999
Q gi|254780445|r 879 IE--GENLAEICITSDITIVHSNGP-TDAFRLSDVPNVSVQC 917 (963)
Q Consensus 879 l~--~~~L~~~~ivS~v~i~~~~~~-~~~~~~~~~~~~~v~v 917 (963)
+. ...|+.++..++|+|+...+. .......-.+++.+.+
T Consensus 873 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (970)
T TIGR00422 873 LKANASDVKRLINFEEVKVVSEKPEIVTEAVAEVVPGFEVII 914 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHEECCCCEEEE
T ss_conf 731189999863865057744787345531220306604773
No 9
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1662.66 Aligned_cols=792 Identities=26% Similarity=0.421 Sum_probs=704.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 89998889968977999999986476144540568888489962822558897621577856687899876708982678
Q gi|254780445|r 17 RTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACF 96 (963)
Q Consensus 17 kt~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~ 96 (963)
.+.+|+++|++++|++||++|+++++|+.. ..+.++|+|+|++|||||||.|||||++|+|++|+++||+||+||+|+|
T Consensus 2 ~~~~~~~y~~~~iE~k~~~~W~~~~~f~~~-~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~t~~D~~~Ry~rm~G~~Vl~ 80 (809)
T PRK13208 2 MPELPKKYDPKEIEEKWQKIWEEEGIYKFD-DEDEKKPVYIIDTPPPTVSGKLHIGHVFSYTHTDFIARYQRMRGYNVFF 80 (809)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 765657899499999999999867993678-6668999699906999988972131668899999999999817996699
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHH
Q ss_conf 88824442089999999876559983348999999999999999999999999970607763698115776798999999
Q gi|254780445|r 97 VPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASE 176 (963)
Q Consensus 97 ~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~ 176 (963)
||||||||||||++|||++ |.+..++++++|++.|++++.++++.|++||+|||+|+||+|+|.||||.|++++||+
T Consensus 81 ~~G~D~~GlPie~~vek~~---~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~y~~~v~~~ 157 (809)
T PRK13208 81 PQGWDDNGLPTERKVEKYY---GIRAHDISREEFIELCRELTDEDEEKFRELWRRLGLSVDWSLEYRTISPEYRRISQKS 157 (809)
T ss_pred CCCCCCCCHHHHHHHHHHC---CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8845856689999999971---9990127999999999999999999999999982861406897075887899999999
Q ss_pred HHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCC
Q ss_conf 99999879611034302205743573650021013210577999833037531122001100000057886544532277
Q gi|254780445|r 177 LLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSS 256 (963)
Q Consensus 177 F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p 256 (963)
|.+|+++||||||.+||+|||.|+|+||++||+|+++.++++||+|++.+. +.+++||||||||||||+||+|||
T Consensus 158 f~~L~~~Gliy~g~~~v~wcp~~~T~ls~~Ev~~~~~~~~~~~ikf~~~~~-----~~~l~iaTTrPeTl~~~~av~v~P 232 (809)
T PRK13208 158 FLDLYKKGLIYRAEAPVLWCPRCRTAIAQAEVEYKEREGKLNYIKFPVKEG-----GEKITIATTRPELLPACVAVVVHP 232 (809)
T ss_pred HHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCC-----CCEEEEEECCHHHHHHHHCEEECC
T ss_conf 999997799787421036776657555656764256776039998885179-----864899957823765302041068
Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCC
Q ss_conf 67458998306653111123743551211188888760985178410011111285754313786651255114432233
Q gi|254780445|r 257 NHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVA 336 (963)
Q Consensus 257 ~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~ 336 (963)
+.+ ++++|+|+++++|+++ +.+||++++||+
T Consensus 233 ~d~---------------------------------------------ry~~l~G~~~~~P~~~----~~vpi~~~~~V~ 263 (809)
T PRK13208 233 DDE---------------------------------------------RYKHLVGKTAIVPLFG----VEVPILADPLVD 263 (809)
T ss_pred CCH---------------------------------------------HHHHHCCCEEECCCCC----CEEEEEEEEEEE
T ss_conf 857---------------------------------------------8898459889716889----666786346650
Q ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22445405640578988989987605212210022034302344551024310017863211355444567545235664
Q gi|254780445|r 337 NDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALIN 416 (963)
Q Consensus 337 ~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e 416 (963)
+++|||+||+||+||++||+ +++++||+++++||++|+|++.++.|+|+.|.+ |++.|++.|++
T Consensus 264 ~~~GTG~V~~~p~~d~~D~~---------~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~e-------a~~~ii~~L~~ 327 (809)
T PRK13208 264 PDFGTGAVMICTFGDQTDVT---------WWRELNLPLRIIIDEDGRITEAAGKYAGLTIKE-------ARKKIIEDLKE 327 (809)
T ss_pred CCCCCCCEEECCCCCCHHHE---------EHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHH-------HHHHHHHHHHH
T ss_conf 46787835667898730330---------244305563000377872424663459968999-------89999999996
Q ss_pred CCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCC-CCC
Q ss_conf 7982100000012211321013203333102366302245542368999987520000024443432024430432-000
Q gi|254780445|r 417 ACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRP-DWL 495 (963)
Q Consensus 417 ~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~-DW~ 495 (963)
+|.|++.++++|+|||||||++||++++++||||++. .+|+++++++++|+|+|+++++||.+||+|++ |||
T Consensus 328 ~g~l~~~~~~~h~~p~c~R~~~pi~~~~~~QWfi~~~-------~~k~~~~~~~~~i~~~P~~~~~r~~~wl~~~~~DW~ 400 (809)
T PRK13208 328 EGLLVKQEPITHNVKVCERCKTPIEILVTRQWFIKVL-------DLKEELLERAKEIEWYPEHMRKRLENWIEGLNWDWC 400 (809)
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCEEEECHHHHHHHH-------HHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCCCCC
T ss_conf 8994134455455641147897216875245665327-------778888876422600584088899999842565420
Q ss_pred CCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01123456722589825884732521124442122211887433564011146887887554566421000033354543
Q gi|254780445|r 496 LSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTI 575 (963)
Q Consensus 496 ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~ 575 (963)
||||||||||||+|+|+++......... .......|...+.+.....++.+++..+.|++||||||||||++|++
T Consensus 401 iSRqr~WGtpiPiw~~~~~~~~~~~~~~-----~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~e~dvlD~WfdS~~~p~~ 475 (809)
T PRK13208 401 ISRQRYFGTPIPVWYCKDCGGEGKPILA-----DEEDLPVDPTKDPPPGYSECCRCGPGEFEPETDVMDTWADSSITPLI 475 (809)
T ss_pred EEECCCCCCCCCEEEECCCCCCCCCCCC-----CHHHCCCCCHHCCCCHHHCCCCCCCCCCEECCCCCCCEEECCCCHHH
T ss_conf 0001235864424760577875640148-----78873778110174111024666876633047666646556778887
Q ss_pred CCC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCC
Q ss_conf 322-----222333443100255444211124554443311784000013037826213453000012344333664113
Q gi|254780445|r 576 LLG-----KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISE 650 (963)
Q Consensus 576 ~~~-----~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~ 650 (963)
..+ ..++++||+|++++|+||+||||+++++++++++++.|||+|++||||+|++|+|||||+||||+|.++|++
T Consensus 476 ~~~~~~~~~~f~~~~P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~Pfk~v~~~G~vld~~G~KMSKS~GNvi~p~eii~~ 555 (809)
T PRK13208 476 VTGWLEDKELFEKLFPADLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVDPEELLEK 555 (809)
T ss_pred HCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 60563215667544885244340598873999999999985388860201114605546774347778896897898653
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67578878887178766554431025677764000001100000122444456731011127888754368999999889
Q gi|254780445|r 651 SGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVRE 730 (963)
Q Consensus 651 yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~ 730 (963)
||||++|||++++++++|++|+++.++...++++||||++||+++++....... +...++.+|+|||++++++++++++
T Consensus 556 yGADalR~~la~~~~~~d~~~~~~~~~~~~~~~~klwN~~rf~~~~~~~~~~~~-~~~~~~~lDrwils~l~~~i~~v~~ 634 (809)
T PRK13208 556 YGADAVRYWAANSRLGSDTRFSEKQIKIGKRLLTKLWNASRFVSSFIEPEKIEE-KAPILEPVDRWILAKLNRVVKKATE 634 (809)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 380999999961894446566899999999999999999999997035456667-6322578899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 87654012266889987863024001010201222789980899999999999999999997000448999999863886
Q gi|254780445|r 731 AYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE 810 (963)
Q Consensus 731 ~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~ 810 (963)
+|++|+|++|++.|++|++++||+||++++|+|+|. ..++..|++++.||+.+|+.+++|||||+||+|||||+.|++
T Consensus 635 ~~e~y~f~~a~~~i~~F~~~~l~~~Yie~~k~R~~~-~~~~~~~~~a~~tL~~vL~~~l~llaP~~PfiaEeiw~~L~~- 712 (809)
T PRK13208 635 ALENYDFAEALEEIESFFWHDFCDNYLELVKSRAYG-EDGSEEQKSAIYTLYTVLRTLLKLLAPFMPFITEEIYSWLYG- 712 (809)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 997358999999999999998789999998898714-888188999999999999999999987889999999986899-
Q ss_pred CCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE-EEEEEECCHHHHHHHC--CCCHHHH
Q ss_conf 773453358899835689899999999999999999999999973899974440-3899829689997722--1136551
Q gi|254780445|r 811 AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLET-APTLYITDSSLISNIE--GENLAEI 887 (963)
Q Consensus 811 ~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea-~v~i~~~d~~~l~~l~--~~~L~~~ 887 (963)
++|||++.||++++.++|+.+++.++.++++...|+++ |++.+|+...+. .++++. +++..+.+. .++|+++
T Consensus 713 ~~sV~~~~wP~~~~~~~d~~~~~~~~~~~~ii~~ir~~----R~~~~i~~r~pl~~i~i~~-~~~~~~~l~~~~~~i~~~ 787 (809)
T PRK13208 713 GSSVHRASWPEVDELLIDEEDEELGELAKEILSAVRKY----KSEAGLSLKAPLKKVEIYA-DASVPELLEEAEEDLKAV 787 (809)
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHHHHH
T ss_conf 98188579999982006989999999999999999999----9975969888245589968-989999999999999985
Q ss_pred EEECEEEEECCCCCC
Q ss_conf 120416996377753
Q gi|254780445|r 888 CITSDITIVHSNGPT 902 (963)
Q Consensus 888 ~ivS~v~i~~~~~~~ 902 (963)
++|++|++++++...
T Consensus 788 ~nv~~v~~~e~~~e~ 802 (809)
T PRK13208 788 HNIEEIELVEGDPEI 802 (809)
T ss_pred HCCCEEEEECCCCHH
T ss_conf 380627996588413
No 10
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1527.11 Aligned_cols=771 Identities=26% Similarity=0.446 Sum_probs=694.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 88899689779999999864761445405688884899628225588976215778566878998767089826788882
Q gi|254780445|r 21 PMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGW 100 (963)
Q Consensus 21 p~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~Gw 100 (963)
|-.+|+.++|++|++.|++++.|+.. .+.+.+.|++..||||++|.||||||+|.|+.|+++||+||+||+|+|+|||
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~--~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~ 79 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPD--PNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGT 79 (877)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 98778466508998778866985678--8777897279689799888651165453789999999987079733357987
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf 44420899999998765599833489999999999999999999999999706077636981157767989999999999
Q gi|254780445|r 101 DCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKI 180 (963)
Q Consensus 101 D~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l 180 (963)
||+|+|+|.+|||++...|+++.++|+++|+++|++|..++.+.+++|++|||+|+||+|+|+||||.+.+.++.+|.+|
T Consensus 80 DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~L 159 (877)
T COG0525 80 DHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRL 159 (877)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 77883089999999987098801058999999999999999899999999847873555311267988999999999999
Q ss_pred HHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 98796110343022057435736500210132105779998330375311220011000000578865445322776745
Q gi|254780445|r 181 AESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQY 260 (963)
Q Consensus 181 ~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y 260 (963)
|++||||||.+||||||.|+||||+.||||+++++...||+||+.++.. +++|+|||||||+|++||+|||+-
T Consensus 160 y~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~-----~i~VATTRPEtmlgdtAVaVhP~D-- 232 (877)
T COG0525 160 YEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDG-----YLVVATTRPETLLGDTAVAVHPDD-- 232 (877)
T ss_pred HHCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCCCCC-----EEEEEECCCCCCCCCEEEEECCCC--
T ss_conf 9789465148743478863340204450001100368999975389986-----389981686301026699989987--
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 89983066531111237435512111888887609851784100111112857543137866512551144322332244
Q gi|254780445|r 261 GLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCG 340 (963)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~G 340 (963)
.++++|+|+.+++|+.+ +.+||+.++||++++|
T Consensus 233 -------------------------------------------eRYk~LvGk~v~lPl~~----r~IpIiaD~~VD~eFG 265 (877)
T COG0525 233 -------------------------------------------ERYKHLVGKEVILPLVG----REIPIIADEYVDPEFG 265 (877)
T ss_pred -------------------------------------------HHHHHHCCCEEECCCCC----CEEEEECCCCCCCCCC
T ss_conf -------------------------------------------66686358889646889----7533534733477678
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 5405640578988989987605212210022034302344551024310-017863211355444567545235664798
Q gi|254780445|r 341 TGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAP-GFSGARVLDDAGEKGNANEVVIAALINACA 419 (963)
Q Consensus 341 TG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~-~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~ 419 (963)
||+|+++|||++.||+ ++++++||+++.+|++|.++++.+ +|+|+.+++ ||++|++.|++.|.
T Consensus 266 TG~VkItpahD~nD~e---------~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~e-------AR~kIv~~L~~~Gl 329 (877)
T COG0525 266 TGAVKITPAHDFNDYE---------VGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFE-------ARKKIVEDLEEQGL 329 (877)
T ss_pred CCEEEECCCCCCCHHH---------HHHCCCCCCEEEECCCCEECCCCCCCCCCCCHHH-------HHHHHHHHHHHCCC
T ss_conf 7418971699940654---------5301798720688899705467764458986999-------99999999996899
Q ss_pred CCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH--CCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 2100000012211321013203333102366302245542368999987520--00002444343202443043200001
Q gi|254780445|r 420 ILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIENRPDWLLS 497 (963)
Q Consensus 420 l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~--~v~~~P~~~k~r~~~~i~~~~DW~IS 497 (963)
|++.+.++|++||||||++||++++++||||+++. ++++++++.+ +++|+|+..++++.+|++|++|||||
T Consensus 330 Lvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~-------la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcIS 402 (877)
T COG0525 330 LVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLE-------LAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCIS 402 (877)
T ss_pred EEEEEECCCCCCCCCCCCCEEEEEECCEEEEEHHH-------HHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEE
T ss_conf 67664445417611677960201232421487075-------26999998745984681688998899998638376422
Q ss_pred CCCCCCCCEEEEEC-CCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12345672258982-58847325211244421222118874335640111468878875545664210000333545433
Q gi|254780445|r 498 RQRNWGVPICFFYN-EKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTIL 576 (963)
Q Consensus 498 RqR~WG~PIPi~~~-e~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~ 576 (963)
||||||+|||+||| ++|+.++..+... +.+ . ...+....+++++||||||||||++++++
T Consensus 403 RQlwwGh~IPvWy~~~~g~v~v~~~~~~-----------~~~-----~---~~~~~~~~~~qd~DVLDTWFSS~LwPfst 463 (877)
T COG0525 403 RQLWWGHRIPVWYCKECGNVVVAEEEPE-----------DPA-----A---AEKCPKEELEQDEDVLDTWFSSSLWPFST 463 (877)
T ss_pred EEEECCCCCCEEEECCCCCEEECCCCCC-----------CHH-----H---HCCCCHHCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 2113176351599669983896786543-----------535-----4---24682202057852323324115646400
Q ss_pred CCC-----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCC
Q ss_conf 222-----223334431002554442111245544433117840000130378262134530000123443336641136
Q gi|254780445|r 577 LGK-----DPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651 (963)
Q Consensus 577 ~~~-----~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~y 651 (963)
++. +++.+||.|+.++|.||+|||.++|+|++..+.++.||+.|++||+|+|++|+|||||+||||||.++|++|
T Consensus 464 lgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~y 543 (877)
T COG0525 464 LGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKY 543 (877)
T ss_pred CCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 68987444777358873003553133899999999999865899962789811678688888755578858979999884
Q ss_pred CHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75788788871-78766554431025677764000001100000122444456731011127888754368999999889
Q gi|254780445|r 652 GADVLRYWAVN-SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVRE 730 (963)
Q Consensus 652 GaD~lR~~~~~-~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~ 730 (963)
||||||+|+++ +.+++|++|+.+.+++..+|.+||||..||+++|+.+...........+.+|||||++++++++.+++
T Consensus 544 GaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~ 623 (877)
T COG0525 544 GADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTE 623 (877)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 85899999995368886657688998889999999874999998525445765433222354889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 87654012266889987863024001010201222789980899999999999999999997000448999999863886
Q gi|254780445|r 731 AYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE 810 (963)
Q Consensus 731 ~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~ 810 (963)
+|++|+|..|.++|++|+|+++|+||++++|.++|.+ ...+++++.||+.+|+.+++||||||||+||||||.+.+.
T Consensus 624 ~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~ 700 (877)
T COG0525 624 ALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT 700 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCC
T ss_conf 9986237889999999969989899999821440285---7778999999999999999984887750157899865898
Q ss_pred CCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHH--CCCCHHHHE
Q ss_conf 773453358899835689899999999999999999999999973899974440389982968999772--211365511
Q gi|254780445|r 811 AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNI--EGENLAEIC 888 (963)
Q Consensus 811 ~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~~~l~~l--~~~~L~~~~ 888 (963)
.|||++.||.+.....|+..+..++.+.++...|++ .|++.++..+....+.+... +.....+ ....|..+.
T Consensus 701 -~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~----~r~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 774 (877)
T COG0525 701 -ESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRN----LRAEMNLSPSAPLKVVLVGS-EELEDRLEANEDDIKGLA 774 (877)
T ss_pred -CEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHHHHC
T ss_conf -837841689863110237799999999999999999----99975999888506999431-767999998899999843
Q ss_pred EECEEEEECC
Q ss_conf 2041699637
Q gi|254780445|r 889 ITSDITIVHS 898 (963)
Q Consensus 889 ivS~v~i~~~ 898 (963)
.++++++...
T Consensus 775 ~~~~i~~~~~ 784 (877)
T COG0525 775 NLEELEILSP 784 (877)
T ss_pred CCCEEEECCC
T ss_conf 7545652156
No 11
>KOG0434 consensus
Probab=100.00 E-value=0 Score=1429.11 Aligned_cols=844 Identities=26% Similarity=0.452 Sum_probs=738.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 88899689779999999864761445405688884899628225588976215778566878998767089826788882
Q gi|254780445|r 21 PMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGW 100 (963)
Q Consensus 21 p~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~Gw 100 (963)
|...|||+.|++++++|.+.+.|+...+..+++|+|+|+||||+|+|-+|.||.|..||||++.||..|+||.|...+||
T Consensus 5 ~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGW 84 (1070)
T KOG0434 5 PENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGW 84 (1070)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 54578744588999999875389999986079984261369965568986214454468777777743046310220166
Q ss_pred CCCCCHHHHHHHHHHHHCCCCH-HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHH
Q ss_conf 4442089999999876559983-348999999999999999999999999970607763698115776798999999999
Q gi|254780445|r 101 DCHGLPIEWKVENEYLAKGKKK-DDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLK 179 (963)
Q Consensus 101 D~hGLPiE~~vek~l~~~~~~~-~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~ 179 (963)
||||||+|+.+.|+||+.|... -+||+++|+++||..+++|..+|+..+.|||.|+|++|.|.||+|.|++.+||+|++
T Consensus 85 D~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFke 164 (1070)
T KOG0434 85 DTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKE 164 (1070)
T ss_pred CCCCCCCCEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEECHHHHHHHHHHHHH
T ss_conf 56888501000022088878999997077675898899998878899999863140432688512167899999999999
Q ss_pred HHHCCCEECCCCEEEECCCCCCCCCCHH--HEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCC
Q ss_conf 9987961103430220574357365002--10132105779998330375311220011000000578865445322776
Q gi|254780445|r 180 IAESDQIYRGIKPIMWSIAEQTTLAEAE--IEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSN 257 (963)
Q Consensus 180 l~~kGliyr~~~pV~w~p~~~T~La~~E--vey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~ 257 (963)
|++|||||||.|.++||+.|.|+||+-| ++|+|+.+|+++|.||+.+.+ .+++|+|||||||||+|.|++|||+
T Consensus 165 L~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~----~~slvAWTTTPWTLPSNlal~Vnp~ 240 (1070)
T KOG0434 165 LHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDP----NVSLVAWTTTPWTLPSNLALCVNPD 240 (1070)
T ss_pred HHHCCCEECCEEEECCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEECCCCC----CEEEEEEECCCCCCCCCEEEEECCC
T ss_conf 986675531136310333358855000003676568997079973126886----1127987458755766604787687
Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHC-CCCEEEEEECCCCCCCCCEEEECCCCC---CCCEEEECCCCC
Q ss_conf 7458998306653111123743551211188888760-985178410011111285754313786---651255114432
Q gi|254780445|r 258 HQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQT-NVKIALVCDVKAEDLSKTMCSHPLKKL---GYTFSVPLIDAE 333 (963)
Q Consensus 258 ~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~-~~~~~~~~~~~g~~l~g~~~~~Pl~~~---~~~~~~pi~~~d 333 (963)
..|+.++-. ..++.||+.+.++..+.+.. +..++++..+.|+.|.|+.|..++... .....+.|+.++
T Consensus 241 ~~Yvki~dk--------~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~ 312 (1070)
T KOG0434 241 FQYVKIKDK--------TTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDD 312 (1070)
T ss_pred EEEEEEEEC--------CCCEEEEEEHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCC
T ss_conf 279999843--------677589972987777735864320799986265313586457665689987315736996157
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 23322445405640578988989987605212210022034302344551024310017863211355444567545235
Q gi|254780445|r 334 YVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAA 413 (963)
Q Consensus 334 ~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~ 413 (963)
||+.+.|||+||.|||+|++||+++...+.+ ++.. .++||||+.|+||.++++|+|.+|+| |++.||..
T Consensus 313 yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI---~~d~-~~~cpVDe~G~~Tsev~dfaG~YVKD-------aDK~Ii~~ 381 (1070)
T KOG0434 313 YVTEDSGTGIVHQAPAFGEEDYRACVANGII---RKDS-LPPCPVDESGLFTSEVTDFAGQYVKD-------ADKLIIRS 381 (1070)
T ss_pred CEECCCCCEEEECCCCCCHHHHHHHHHCCCC---CCCC-CCCCCCCCCCCCCCCCCCCCCEEECC-------CHHHHHHH
T ss_conf 2742788613650776570548999973951---3778-78886166776310054225524221-------43999999
Q ss_pred HHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCC
Q ss_conf 66479821000000122113210132033331023663022455423689999875200000244434-32024430432
Q gi|254780445|r 414 LINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGK-NRLRSMIENRP 492 (963)
Q Consensus 414 L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k-~r~~~~i~~~~ 492 (963)
|++.|.|+....++||||+||||++|+|||+++.|||++. ++.+++++.+++++|+|+..| +||.|||+|.|
T Consensus 382 lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk-------~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nAR 454 (1070)
T KOG0434 382 LKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVK-------NIVDQLLRNNMKTHWVPQNIKEKRFANWLKNAR 454 (1070)
T ss_pred HHHCCCEEEEEEEEECCCCEECCCCHHHHHHCCHHHHHHH-------HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9852746655656644673355897078763427651199-------779999851554434770556778888875303
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00001123456722589825884732521124442122211887433564011146887887554566421000033354
Q gi|254780445|r 493 DWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACT 572 (963)
Q Consensus 493 DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s 572 (963)
||.|||+||||||||+|..+|++.++.-..+..+.++-...-.|..-+....-.++..++...++|..+|+||||+||||
T Consensus 455 DW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSM 534 (1070)
T KOG0434 455 DWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSM 534 (1070)
T ss_pred HCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCEEHHHHHHHHHHCCCCC
T ss_conf 12110035558885547736873579953288898840973114445414756504678876212166676564315887
Q ss_pred CC-----CCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHH
Q ss_conf 54-----3322-22233344310025544421112455444331178400001303782621345300001234433366
Q gi|254780445|r 573 HT-----ILLG-KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEE 646 (963)
Q Consensus 573 ~~-----~~~~-~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ 646 (963)
+| ++++ +.|+..||||++-||.||+|||||+++.+++++||++|||||+++|+||.++|+|||||+.|+.||..
T Consensus 535 PYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~ 614 (1070)
T KOG0434 535 PYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSL 614 (1070)
T ss_pred CCHHHCCCCCCHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHEEEEEEEEECCCHHHHHHHHCCCCHHH
T ss_conf 62021188533677764496676651320022045579999998717985222167016881210777665315988789
Q ss_pred HHCCCCHHHHHHHHHHCCCC--CCCCCCCHHHHHHH-HHHHHHCCCCCCCCCCCCCCCC---C----CCCHHHHHHHHHH
Q ss_conf 41136757887888717876--65544310256777-6400000110000012244445---6----7310111278887
Q gi|254780445|r 647 IISESGADVLRYWAVNSDYH--DDQRLGKNIIQTNI-DTYRKLRNTIRWMLGMLAHDTG---N----EPSLADMPALEQL 716 (963)
Q Consensus 647 ii~~yGaD~lR~~~~~~~~~--~d~~~~~~~l~~~~-~~~~kl~Nt~rf~l~~l~~~~~---~----~~~~~~l~~~Dkw 716 (963)
+|++||||+||||+++|+.. +.++|.+++++.+. +.+...||++||+++|..-... . .....+-+.+|+|
T Consensus 615 iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrW 694 (1070)
T KOG0434 615 IINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRW 694 (1070)
T ss_pred HHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 88762620225665158410043344421118999876612556778999988887502458766633334662057899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 54368999999889876540122668899878630240010102012227899808999999999999999999970004
Q gi|254780445|r 717 MLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPIL 796 (963)
Q Consensus 717 iLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~ 796 (963)
|++.++.++.-+++.|++|++.+++..+..|+. +|+|||+++.+.|+-.+.. ..+-..|..+|..+|-+++++||||+
T Consensus 695 I~a~~qslv~fv~~eM~~YrLytVvp~llkfiD-~LTNwYiR~nRrrlkGe~G-~~d~~~AL~~Lf~vL~t~~r~MaPfT 772 (1070)
T KOG0434 695 ILASTQSLVGFVREEMDQYRLYTVVPRLLKFID-ELTNWYIRFNRRRLKGENG-EHDCHNALNVLFEVLFTLVRVMAPFT 772 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHH-HHHHHHEEHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999998875032415888999998-7546630120555257776-17889999999999999999975885
Q ss_pred HHHHHHHHHHCC---------CCCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 489999998638---------86773453358899835689899999999999999999999999973899974440389
Q gi|254780445|r 797 PFTAEEAWLSLN---------PEAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPT 867 (963)
Q Consensus 797 P~~aEEiw~~l~---------~~~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~ 867 (963)
||++|.+||+|. +...|||...+|.+.++++|+.++...+.++.+.+.++.++| |+.-.++.+|...+.
T Consensus 773 PF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R~iRe--rn~islKtPLK~~iv 850 (1070)
T KOG0434 773 PFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRE--RNTISLKTPLKELIV 850 (1070)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHEEE
T ss_conf 488899999887307853347765426776358732542560687799999999999997766--058754475033378
Q ss_pred EEECCHHHHHHHCC--CCHHHHEEECEEEEECCC
Q ss_conf 98296899977221--136551120416996377
Q gi|254780445|r 868 LYITDSSLISNIEG--ENLAEICITSDITIVHSN 899 (963)
Q Consensus 868 i~~~d~~~l~~l~~--~~L~~~~ivS~v~i~~~~ 899 (963)
+ .+|++.+..++. ..+.+-++|-++.+...+
T Consensus 851 i-~~d~~~ledik~l~~yI~eElNVr~v~~~~d~ 883 (1070)
T KOG0434 851 I-HSDEEYLEDIKSLERYILEELNVREVVFTSDE 883 (1070)
T ss_pred E-CCCHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 7-48789987799999999986052056641562
No 12
>pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included.
Probab=100.00 E-value=0 Score=1411.70 Aligned_cols=598 Identities=38% Similarity=0.738 Sum_probs=560.4
Q ss_pred HHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999986476144540568888489962822558897621577856687899876708982678888244420899999
Q gi|254780445|r 32 ELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKV 111 (963)
Q Consensus 32 ~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~v 111 (963)
++|++|+++++|++..+.++++|+|+++||||||||.|||||++|||++|+++||+||+||||+|||||||||||||++|
T Consensus 1 eiq~~W~~~~~f~~~~~~~~~k~kf~i~~~pPY~nG~lH~GH~~~~t~~D~~aRy~rm~G~~Vl~p~GwD~~GlPiE~~v 80 (606)
T pfam00133 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKV 80 (606)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 96789875799057633479999589970898978850242668789999999999828997799884561439999999
Q ss_pred HHHHHHCC-CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 99876559-98334899999999999999999999999997060776369811577679899999999999879611034
Q gi|254780445|r 112 ENEYLAKG-KKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGI 190 (963)
Q Consensus 112 ek~l~~~~-~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~ 190 (963)
+|+++.++ ....++++++|++.||+|++++++.|++||+|||+|+||+|+|.||||+|++++||+|.+|+++||||||.
T Consensus 81 ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~DW~r~~~T~dp~y~~~~~w~F~~L~~~Gliyr~~ 160 (606)
T pfam00133 81 EKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGK 160 (606)
T ss_pred HHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99742115998365799999999999999999999999998291264588725278125499999999999779817751
Q ss_pred CEEEECCCCCCCCCCHHHEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 30220574357365002101321057799983303753112200110000005788654453227767458998306653
Q gi|254780445|r 191 KPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSG 270 (963)
Q Consensus 191 ~pV~w~p~~~T~La~~Evey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~ 270 (963)
+||+|||.|+|||||+||+|+|+++++++++|++.+.. +.+++||||||||||||++++|||+++|+.+.+
T Consensus 161 ~~V~wcp~~~T~La~~Ev~~~d~~~~~~~v~f~l~~~~----~~~l~i~TTrPeTl~g~~~l~v~p~~~y~~~~~----- 231 (606)
T pfam00133 161 KPVNWSPALNTALSEAEVEYKDVKGPSIHVAFPLADGK----GASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRV----- 231 (606)
T ss_pred EEECCCCCCCEECCCCCEEECCCCCCEEEEECCCCCCC----CCEEEEEECCCCCCCCCEEEEECCCCCEEEEEC-----
T ss_conf 55012442541224440210003330356504457898----766999943542003653689888876510443-----
Q ss_pred CCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCC
Q ss_conf 11112374355121118888876098517841001111128575431378665125511443223322445405640578
Q gi|254780445|r 271 QHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSH 350 (963)
Q Consensus 271 ~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPah 350 (963)
.++.+++++++++.+.........++.+++|++|+|++|.||+++ +.+||+.++||++++|||+||+||||
T Consensus 232 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~G~~~~~P~~~----~~ipv~~~~~V~~~~GTG~V~~vPah 302 (606)
T pfam00133 232 -----TGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPFVN----REIPIIADDYVDMEFGTGAVHIAPAH 302 (606)
T ss_pred -----CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEECCCEEECCCCC----CEEEEEECCCCCCCCCCCCEECCCCC
T ss_conf -----860678999999999740330243331334523127789788789----75789954641566687713336777
Q ss_pred CHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCC
Q ss_conf 98898998760521221002203430234455102431001786321135544456754523566479821000000122
Q gi|254780445|r 351 GVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSY 430 (963)
Q Consensus 351 g~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~y 430 (963)
|++||++ +++++|+++++||++|++++++++|.|+.|.+ |++.|++.|+++|.|+..+.++|+|
T Consensus 303 ~~~D~~~---------~~k~~l~~~~~i~~~g~~~~~~~~~~G~~v~~-------a~~~ii~~L~~~g~l~~~~~~~~~~ 366 (606)
T pfam00133 303 GEDDYEV---------GKRHNLEFINPVDDDGTYNEEAPEFQGLKRFK-------ARKKIVELLTEKGLLLKIEPIEHSY 366 (606)
T ss_pred CHHHHHH---------HHHCCCCCEEEECCCCEECCCCCCCCCCEEEE-------CCHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 7799999---------99839985024489884667651115852560-------2189999788689866532201015
Q ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 11321013203333102366302245542368999987520000024443432024430432000011234567225898
Q gi|254780445|r 431 PHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFY 510 (963)
Q Consensus 431 P~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~ 510 (963)
||||||++||++++++||||+++ .+|+++++++++++|+|+.+++|+.+||+|++|||||||||||||||+|+
T Consensus 367 p~~~R~~~~vi~~~~~QWFi~~~-------~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~iSRQR~WGtPIPi~~ 439 (606)
T pfam00133 367 PHCWRSGTPIIYRATPQWFVRMK-------NLAEAALKAVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWY 439 (606)
T ss_pred CEECCCCCEEEEEECHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHCCHHHEEECCCCCCEEEEECCCCCCCCEEE
T ss_conf 55547894799960278777559-------99999998644330275010120330552565635754146787322698
Q ss_pred CCCC-CEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCC
Q ss_conf 2588-4732521124442122211887433564011146887887554566421000033354543322------22233
Q gi|254780445|r 511 NEKG-EILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLG------KDPKL 583 (963)
Q Consensus 511 ~e~~-~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~------~~~~~ 583 (963)
|++| ++++..+..+.+.......+.+.|++....+.+ .+++..+.|++||||||||||++++..+. .++++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~re~DtmDtwfdSg~~~~~~~~~p~~~~~~f~~ 517 (606)
T pfam00133 440 SKDTGEVYVRGSLKELVAGREEEEGIEAWLHRDAKDLL--GKGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEFKR 517 (606)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHC--CCCCCCEEECCEEEECEECCCCCHHHHHCCCHHCHHHHHC
T ss_conf 37898316750245555443046675310121246553--5788751567761202111775689884785127698953
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHHC
Q ss_conf 34431002554442111245544433117840000130378262134530000123443336641136757887888717
Q gi|254780445|r 584 AWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNS 663 (963)
Q Consensus 584 ~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~~ 663 (963)
|||+|+|++|+||+||||++++++++++++++|||+|++||||+|++|+|||||+||||+|.++|++||||++|||+|+|
T Consensus 518 ~~PvD~~i~G~D~~r~w~~~~~~~~~~~~~~~Pfk~l~~~G~vld~~G~KMSKSkGNvv~p~~~i~~yGaD~~Rl~~~~a 597 (606)
T pfam00133 518 FFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASS 597 (606)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHCC
T ss_conf 88984897767688489999997000027997654588766189998878888889978989999874929999999759
Q ss_pred CCCCCCCCC
Q ss_conf 876655443
Q gi|254780445|r 664 DYHDDQRLG 672 (963)
Q Consensus 664 ~~~~d~~~~ 672 (963)
++++|++||
T Consensus 598 ~~~~D~~~S 606 (606)
T pfam00133 598 DYGRDINFS 606 (606)
T ss_pred CCHHCCCCC
T ss_conf 922046559
No 13
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1310.96 Aligned_cols=724 Identities=20% Similarity=0.296 Sum_probs=584.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-------CHHHCCHHHHHH--HHHHHHH
Q ss_conf 7621577856687899876708982678888244420899999998765599-------833489999999--9999999
Q gi|254780445|r 69 IHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGK-------KKDDIPVNEFRQ--ACRDSAS 139 (963)
Q Consensus 69 lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~-------~~~~~~~~~~~~--~c~~~a~ 139 (963)
|||||++|||++||++||+||+||||+|||||||||||||..|++ +....+ +...++.+++.+ .++.|+.
T Consensus 1 LH~GH~~~~ti~DiiaRykrM~G~~Vl~p~GwD~~GlPi~~~ae~-~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~~ 79 (888)
T PRK12300 1 LHIGHGRTYTIGDIYARYKRMKGYNVLFPMGFHVTGTPILGIAER-IAEGDPETIDIYRNLYGIPEEEIEKFKDPEYIVE 79 (888)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH-HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 940554787999999999980799779999888899538999999-8604446899987751366888887500999999
Q ss_pred HHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEE-
Q ss_conf 9999999999970607763698115776798999999999998796110343022057435736500210132105779-
Q gi|254780445|r 140 AWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSI- 218 (963)
Q Consensus 140 ~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~- 218 (963)
++++.|++||+|||+|+||+|+|.||||+|++|+||+|.+||++||||||.+||||||.|+||||+|||++.+..+..-
T Consensus 80 ~~~~~~~~q~~rlG~s~DW~re~~T~dp~y~~~v~w~F~kL~ekGliyrg~~~V~WcP~~~T~la~~ev~~~~~~~~~~~ 159 (888)
T PRK12300 80 YFSKEAKEAMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVGWCPKDENPVGDHDTKDGEEPTIGEY 159 (888)
T ss_pred HHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCCCCHHHCCCCCCEEEE
T ss_conf 99999999999838606369986648887999999999999977994978778672598784822205550877551689
Q ss_pred -EEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCC
Q ss_conf -9983303753112200110000005788654453227767458998306653111123743551211188888760985
Q gi|254780445|r 219 -LVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVK 297 (963)
Q Consensus 219 -~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~ 297 (963)
.++|+. .+.+++||||||||||||+|+||||+++|+++++ .++.+|++++++.++..+ ..+
T Consensus 160 ~~ikf~~-------~~~~l~v~TTrPeTl~g~ta~~v~Pd~~Yv~~~~----------~~e~~i~~~~~~~~l~~~-~~~ 221 (888)
T PRK12300 160 TLIKFEG-------DDLILPAATLRPETVFGVTNLWVNPDAEYVVAEV----------DGEKWIVSKEAARKLSFQ-DRE 221 (888)
T ss_pred EEEEECC-------CCEEEEEEECCHHHHHHHHEEEECCCCCEEEEEC----------CCCCHHHHHHHHHHHHHC-CCC
T ss_conf 9999717-------9827999726802543000037777632345642----------772008999999998622-211
Q ss_pred EEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEE--
Q ss_conf 178410011111285754313786651255114432233224454056405789889899876052122100220343--
Q gi|254780445|r 298 IALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVP-- 375 (963)
Q Consensus 298 ~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~-- 375 (963)
++++++++|++|+|++++||+++. .+||+.||||++++|||+||+|||||++||.+++++....+ ..++++
T Consensus 222 ~~~~~~~~g~~l~G~~~~~P~~~~----~ipI~~ad~V~~~~GTG~V~~vPaHd~~Dy~~~~~~~~~~~---~~i~ii~v 294 (888)
T PRK12300 222 VEIIEEIKGSELIGKKVKNPVTGK----EVPILPAKFVDPDNGTGVVMSVPAHAPYDYVALRDLDVEEI---ELIPLIKV 294 (888)
T ss_pred EEEEEEECCCEECCEEEECCCCCC----EEEEEECCEECCCCCCCEEEECCCCCHHHHHHHHHCCCCCC---CCCCCEEE
T ss_conf 367532026330350898678898----73598614074788977289657898778999986072424---67772320
Q ss_pred ------------------ECCC---------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf ------------------0234---------------4551024310017863211355444567545235664798210
Q gi|254780445|r 376 ------------------SPVD---------------GRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILN 422 (963)
Q Consensus 376 ------------------~~vd---------------~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~ 422 (963)
+..| .+|.++++.++|.|+.|.+ |++.|++.|++.|.+..
T Consensus 295 ~~~g~~p~~~~~~~~~i~~~~d~~l~~a~~~~y~~e~~~G~l~~~~~~~~G~~v~e-------A~~~i~~~L~~~g~~~~ 367 (888)
T PRK12300 295 EGYGEFPAKEIVEKMGIKSQKDPELEEATKELYKAEFHKGVLREDTGEYAGKPVRE-------AREKITEDLIESGIAEI 367 (888)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCHHCCCCCHHH-------HHHHHHHHHHHCCCCCE
T ss_conf 56677527777775077664423477776654222311753415651106979999-------99999999997799740
Q ss_pred HHHHCCCCCCCCCCCCCEEEEEE-EEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 00000122113210132033331-02366302245542368999987520000024443432024430432000011234
Q gi|254780445|r 423 RSIVKHSYPHSWRSKKPIIFRTT-SQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRN 501 (963)
Q Consensus 423 ~~~~~H~yP~cwR~~~pii~r~~-~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~ 501 (963)
...+.|+++|| ||++|++++++ +||||++. ...||+++++++++|+|+|++++++|.+||++++||||||||+
T Consensus 368 ~y~~~~~~v~~-R~g~~~v~~~~~dQWFi~~~-----~~~~k~~~~~~~~~i~~~P~~~~~~~~~~l~~l~DW~iSRqr~ 441 (888)
T PRK12300 368 MYEFSEKPVYC-RCGTECVVKVVKDQWFIDYS-----NPEWKELAHKCLDRMRIIPEEARAEFENKIDWLKDRACARRRG 441 (888)
T ss_pred EECCCCCCCCC-CCCCEEEEECCCCCCCCCCC-----CHHHHHHHHHHHCCCEEECCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 30357788678-99986763416876410478-----7677899998761665657213455787761468865456667
Q ss_pred CCCCEEEEEC----C---CCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5672258982----5---88473252112444212221188743356401114688788755456642100003335454
Q gi|254780445|r 502 WGVPICFFYN----E---KGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHT 574 (963)
Q Consensus 502 WG~PIPi~~~----e---~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~ 574 (963)
|||||| |.+ + |+.+++...++.+.. ...+.+. + .+..+....-+....+..++|.++|....
T Consensus 442 wGtpiP-wd~~~~iesl~dstiy~~~yt~~~~~---~~~~~~~--~-----~l~~~~~d~v~~~~~~~~~~~~~~~~~~~ 510 (888)
T PRK12300 442 LGTPLP-WDERWVIESLSDSTIYMAYYTIAKKI---RQYGLDP--E-----QLTPEFFDYVFLGKGDPEEISKKTGIPKE 510 (888)
T ss_pred CCCCCC-CCCCEEEECCCCCCCHHHHHHHHHHH---HCCCCCH--H-----HCCCHHCCEEECCCCCHHHHHHHHCCCHH
T ss_conf 697887-04882342277764001024687876---3348995--6-----75810130431489976666665199888
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE-EEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCC
Q ss_conf 332--2222333443100255444211124554443311784000-0130378262134530000123443336641136
Q gi|254780445|r 575 ILL--GKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPF-TSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651 (963)
Q Consensus 575 ~~~--~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pf-k~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~y 651 (963)
.+. +++|++|||+|+|++|+|+++.|+...++.++++++..++ |+|++||||+++ |+|||||+||+|+|.++|++|
T Consensus 511 ~~~~~~~~f~~wyP~D~~~~G~D~i~~hl~f~~~~~~aif~~~~~pk~v~~~G~Vl~e-G~KMSKSkGNvV~P~eiI~~Y 589 (888)
T PRK12300 511 ILEEMREEFEYWYPLDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLE-GKKMSKSKGNVLPLREAIEEY 589 (888)
T ss_pred HHHHHHHHHCEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECC-CEECCCCCCCCCCHHHHHHHC
T ss_conf 9998688646426760143531033567999998868871777788757983289459-877030348989989999761
Q ss_pred CHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75788788871-78766554431025677764000001100000122444456731011127888754368999999889
Q gi|254780445|r 652 GADVLRYWAVN-SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVRE 730 (963)
Q Consensus 652 GaD~lR~~~~~-~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~ 730 (963)
|||++|||+++ +++++|++|+++.++++.++++++||.++.+.+.. ...+++.+|+|+|++++++++++++
T Consensus 590 GADalRl~l~~~a~~~~d~~~~~~~v~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~D~wils~l~~~i~~v~~ 661 (888)
T PRK12300 590 GADVVRLYLASTAELSQDADFREKEAESIRRQLERFYELAVELAEEE--------SEEELRFIDKWLLSRLYSYIKEVTE 661 (888)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 96299999997188556864579999999999999999999763267--------7767766789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 87654012266889987863024001010201222789980899999999999999999997000448999999863886
Q gi|254780445|r 731 AYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE 810 (963)
Q Consensus 731 ~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~ 810 (963)
+|++|+|++|++.++.|+++++ +||+++.++ ..+.+|+++++++++|||||+||+|||||+.|++
T Consensus 662 ~~e~~~f~~a~~~~~~~~~~~~-~~Y~~~~~~-------------~~~~~l~~~l~~~~~LLaP~~PhiaEElW~~Lg~- 726 (888)
T PRK12300 662 AMEEFQTRKAIQEIFYNLLNDL-RWYLRRGGE-------------PNNKVLREVIEIWIRLLAPFTPHLAEEIWEKLGG- 726 (888)
T ss_pred HHHHCCHHHHHHHHHHHHHHHH-HHHHHHHCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 9984459999999999999999-999987371-------------8899999999999999604104889999996799-
Q ss_pred CCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCH
Q ss_conf 773453358899835689899999999999999999999999973899974440389982968
Q gi|254780445|r 811 AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDS 873 (963)
Q Consensus 811 ~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~ 873 (963)
.+|||+++||+++++++|+.++..++.++++.+.|++++. ..+|+. ..+.|++.++
T Consensus 727 ~~sV~~a~wP~~de~~id~~~e~~~~~~~~~i~~ir~~~~----~~~~~p---~~~~i~va~~ 782 (888)
T PRK12300 727 EGFVSLAPWPEPDESKIDEEAELAEEYVKNLIEDIKEIIK----VAKINP---KRVYIYVAPD 782 (888)
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HCCCCC---CEEEEEECCH
T ss_conf 9837707999999342798999999999999999999998----619998---6699997969
No 14
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=0 Score=1291.39 Aligned_cols=649 Identities=24% Similarity=0.345 Sum_probs=508.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 88899689779999999864761445405688884899628225588976215778566878998767089826788882
Q gi|254780445|r 21 PMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGW 100 (963)
Q Consensus 21 p~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~Gw 100 (963)
.|++|+.++|++||++|+++++|+.. +.++|+|.++||||||||.|||||++|||++|+++||+||+||||+|||||
T Consensus 2 ~~~Y~~~~iE~kw~~~W~~~~~f~~~---~~~~~k~yvld~~PYpsG~lH~GH~~~~ti~Dii~Rykrm~G~~Vl~p~Gw 78 (822)
T PRK00390 2 QMRYNPKEIEKKWQKYWEENKTFKVT---EDSKPKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGW 78 (822)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCC---CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 88788699999999999856982489---778998079377999898611325564789999999987189963898973
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHH
Q ss_conf 44420899999998765599833489999999999999999999999999706077636981157767989999999999
Q gi|254780445|r 101 DCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKI 180 (963)
Q Consensus 101 D~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l 180 (963)
||||||+|++|.+. +. . +++|+.++|+.|++||+|||+|+||+|+|.||||+|++|+||+|.+|
T Consensus 79 D~~GLPaE~~aik~----~~-----~-------p~~~t~~nI~~~k~q~k~lG~~~DW~r~~~T~dp~y~~~~qw~F~~l 142 (822)
T PRK00390 79 DAFGLPAENAAIKT----GT-----H-------PAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWLFLKL 142 (822)
T ss_pred CCCCCHHHHHHHHH----CC-----C-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 66886898999994----99-----8-------89999999999999999839543068987757877999999999999
Q ss_pred HHCCCEECCCCEEEECCCCCCCCCCHHHE-------------------------EEE-----------------------
Q ss_conf 98796110343022057435736500210-------------------------132-----------------------
Q gi|254780445|r 181 AESDQIYRGIKPIMWSIAEQTTLAEAEIE-------------------------YHD----------------------- 212 (963)
Q Consensus 181 ~~kGliyr~~~pV~w~p~~~T~La~~Eve-------------------------y~d----------------------- 212 (963)
|++||||||.+||+|||.|+|||||+||+ |.|
T Consensus 143 ~ekGliyr~~~~V~Wcp~~~T~LAn~eV~~G~~~r~~~~V~~k~~~qw~~kit~Ya~~Ll~~l~~l~~wP~~vk~mQ~nW 222 (822)
T PRK00390 143 YEKGLAYRKESPVNWCPVDQTVLANEQVIDGRSWRSGAPVEKKELPQWFLKITDYADELLDDLDELDGWPEKVKTMQRNW 222 (822)
T ss_pred HHCCCEEECCEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
T ss_conf 98899795232420079768776504441476434687046630440355200758887502100246607776653043
Q ss_pred -EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHH
Q ss_conf -1057799983303753112200110000005788654453227767458998306653111123743551211188888
Q gi|254780445|r 213 -VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIA 291 (963)
Q Consensus 213 -~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~ 291 (963)
.+|.+++|+|++.+.. .+++|||||||||||+++++|+|+++|+...+ ... ..-+.+ .+...
T Consensus 223 IG~s~g~~v~F~~~~~~-----~~l~v~TTrP~Tl~G~t~~~v~p~h~~~~~~~--~~~----~~~~~~------~~~~~ 285 (822)
T PRK00390 223 IGRSEGAEVTFKVKGSD-----EKLEVFTTRPDTLFGATYLVLAPEHPLAEKLA--EQN----PAVAAF------IEECK 285 (822)
T ss_pred CCCEEEEEEEEECCCCC-----CEEEEEECCHHHHCCCCEEEEECCCHHHHHHH--HCC----HHHHHH------HHHHH
T ss_conf 34200079863316998-----55999968833522862799937978999998--448----999999------99987
Q ss_pred HHCCCC-EEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCC
Q ss_conf 760985-1784100111112857543137866512551144322332244540564057898898998760521221002
Q gi|254780445|r 292 NQTNVK-IALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSV 370 (963)
Q Consensus 292 ~~~~~~-~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~ 370 (963)
.....+ .....+.+|.. .|++++||+++. .+||+.||||++++|||+||+|||||++||++ ++++
T Consensus 286 ~~~~~e~~~~~~ek~G~~-~G~~~~~P~~~~----~iPI~~ad~V~~~~GTG~V~~~PaHd~~D~~~---------a~k~ 351 (822)
T PRK00390 286 NKSDLERTLATKEKTGVF-TGLYAIHPLTGE----KIPVWIANYVLMDYGTGAVMAVPAHDQRDFEF---------AKKY 351 (822)
T ss_pred HCCHHHHHHHHCEEECEE-CCCEEECCCCCC----EEEEEEECCCCCCCCCCCEEECCCCCHHHHHH---------HHHC
T ss_conf 124366655315010100-585897778896----55699625252457877267568788789999---------9982
Q ss_pred CEEEEECCCC---CCCCCCC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEE
Q ss_conf 2034302344---5510243-----1001786321135544456754523566479821000000122113210132033
Q gi|254780445|r 371 DIKVPSPVDG---RGFYTTE-----APGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIF 442 (963)
Q Consensus 371 ~l~~~~~vd~---~G~~~~~-----~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~ 442 (963)
|||+...++. .+.|+++ .+.|.|+.+. +|+++|++.|++.|.. +..+.
T Consensus 352 ~Lpi~~Vi~~~~~~~~~~~~G~lins~~~~Gl~~~-------eA~~~ii~~L~~~g~g----------------~~~i~- 407 (822)
T PRK00390 352 GLPIKQVIGGDVSEEAYTEDGVLINSGELDGLDSE-------EAKEAIIAWLEEKGLG----------------KRKVN- 407 (822)
T ss_pred CCCCEEEECCCCCCCCCCCCEEEECCHHCCCCCHH-------HHHHHHHHHHHHCCCC----------------CCCCC-
T ss_conf 99824763788766545577148763421786468-------8999999999977998----------------66341-
Q ss_pred EEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCH
Q ss_conf 33102366302245542368999987520000024443432024430432000011234567225898258847325211
Q gi|254780445|r 443 RTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAI 522 (963)
Q Consensus 443 r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~ 522 (963)
| | +||||||||||||+|||+|||++|+.++.++.
T Consensus 408 --------------------------------y-------r-------LRDW~iSRQRyWG~PIPi~~c~~~~~v~v~e~ 441 (822)
T PRK00390 408 --------------------------------Y-------R-------LRDWGISRQRYWGEPIPIIHCEDCGVVPVPED 441 (822)
T ss_pred --------------------------------E-------E-------CCCCEEECCCCCCCCEEEEEECCCCEEEEEHH
T ss_conf --------------------------------0-------1-------26632211202578403899578977871078
Q ss_pred H--HHHHHHH--HHCCCCC-CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCC
Q ss_conf 2--4442122--2118874-3356401114688788755456642100003335454332------------22223334
Q gi|254780445|r 523 N--DRIIKTF--KDQGSDA-WFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL------------GKDPKLAW 585 (963)
Q Consensus 523 ~--~~i~~~~--~~~g~d~-~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~------------~~~~~~~~ 585 (963)
. ..+.+.+ ...|..+ ....+..+ ..|+.|+.+++|++||||||||| |||+.. .+.+++|+
T Consensus 442 ~Lpv~LPe~~~~~~~g~~PL~~~~~w~~-~~c~~~g~~~~RetDt~DtW~dS--sWY~~ry~~p~~~~~~~d~~~~~yw~ 518 (822)
T PRK00390 442 DLPVVLPEDVVPDGTGESPLAKHPEWVN-VTCPKCGKPARRETDTMDTFVGS--SWYYLRYTDPHNDEAMFDKEAANYWL 518 (822)
T ss_pred HCCCCCHHHEECCCCCCCHHHHCCCCEE-EECCCCCCCCEECCCCCCEEECC--CCEEEECCCCCCCCCCCCHHHHHHCC
T ss_conf 7553460013006889994684700175-21477787214535310201135--44000015776444667977886028
Q ss_pred CCCCCCCCCCCC--------CHHHHHHHHHHHHCCCCCEEEEECCCCCEECC------------------------CCCC
Q ss_conf 431002554442--------11124554443311784000013037826213------------------------4530
Q gi|254780445|r 586 PADVYLEGSDQH--------RGWFQHSLLESCATRGSTPFTSLITHGFSVDE------------------------NGEK 633 (963)
Q Consensus 586 PaD~~~eG~Dq~--------RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~------------------------~G~K 633 (963)
|+|+|++|.+ | |||+..+.-++. +....||+++++||||+++ +|+|
T Consensus 519 PvD~YigG~E-HailHLlYsRF~~~~l~dlg~-~~~~ePF~~l~~qGmVl~~~~~~~~~~~~~~~~v~~~~~~~~~~g~K 596 (822)
T PRK00390 519 PVDQYIGGIE-HAVLHLLYARFFHKVLRDLGL-VSSDEPFKKLLTQGMVLGETYYDERGNWVSPADVEVERDEKRIGGIK 596 (822)
T ss_pred CCEEECCCHH-HHHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHEECCEEECCCCCCCCCCCCCHHHEEEECCCCCCCCCC
T ss_conf 9614016445-667788888899999987167-55677757750445684254444567766601124204556767761
Q ss_pred HHCCCCCCCCHHHHHCCCCHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 0001234433366411367578878887-178766554431025677764000001100000122444456731011127
Q gi|254780445|r 634 MSKSKGNVVFPEEIISESGADVLRYWAV-NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPA 712 (963)
Q Consensus 634 MSKS~GNvi~p~~ii~~yGaD~lR~~~~-~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~ 712 (963)
||||+||||+|.++|++||||++|||++ ++++++|+.|+++.++++.++++|+||.+.. ........
T Consensus 597 MSKSkGNvv~P~~ii~~yGADalRl~~l~~ap~~~d~~ws~~~i~g~~rfl~rlw~~~~~------------~~~~~~~~ 664 (822)
T PRK00390 597 MSKSKGNVVDPDDIIDKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVYD------------EGAVAALE 664 (822)
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC------------CCCCCCCC
T ss_conf 676578968989998754807999999960885666120487899999999999997304------------44556872
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88875436899999988987654012266889987863024001010201222789980899999999999999999997
Q gi|254780445|r 713 LEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWI 792 (963)
Q Consensus 713 ~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lL 792 (963)
.|+|+++++++++++|+++|++|+|++|++.+++|++ +|+ +..++.+++++++.+++||
T Consensus 665 ~d~~l~~~l~~~I~~vt~~~e~~~fn~ai~~l~~f~N-~l~--------------------k~~~~~~l~~~l~~l~rlL 723 (822)
T PRK00390 665 ADKELRRALHKTIKKVTEDIERLRFNTAIAALMELVN-ALS--------------------KAPDRAVLREALEILVRLL 723 (822)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHH--------------------HHHHHHHHHHHHHHHHHHH
T ss_conf 3199999999999999999976677699999999999-998--------------------7251899999999999999
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHCC
Q ss_conf 000448999999863886773453358899835689
Q gi|254780445|r 793 APILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQN 828 (963)
Q Consensus 793 aPi~P~~aEEiw~~l~~~~~SI~~~~wP~~~~~~~d 828 (963)
|||+||+|||+|+.|++ .+|||++.||++++++..
T Consensus 724 aPf~PhiaEElW~~Lg~-~~sV~~~~WP~~de~~l~ 758 (822)
T PRK00390 724 APFAPHIAEELWQELGH-EGSIANAPWPEVDEAALV 758 (822)
T ss_pred HHHHHHHHHHHHHHCCC-CCCEEECCCCCCCHHHHH
T ss_conf 87889999999997799-985645899967878882
No 15
>KOG0432 consensus
Probab=100.00 E-value=0 Score=1188.43 Aligned_cols=784 Identities=24% Similarity=0.373 Sum_probs=677.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 01588899988899689779999999864761445405688884899628225588976215778566878998767089
Q gi|254780445|r 12 TLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRN 91 (963)
Q Consensus 12 tl~lPkt~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G 91 (963)
++-+|+. ++....|..|+++|++.+.|+.....+ ..+.|++.-|||+++|.||+|||++-+++|.++||+||+|
T Consensus 39 ~~~~~~~-----y~p~~vE~~wy~ww~k~g~fkp~~~~~-~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G 112 (995)
T KOG0432 39 SGPLPAA-----YSPAYVESAWYKWWEKQGFFKPEYGPN-PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHG 112 (995)
T ss_pred CCCCCCC-----CCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7765656-----786136888898898717888656778-8885325159997656310657888788999999998259
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHH
Q ss_conf 8267888824442089999999876559-983348999999999999999999999999970607763698115776798
Q gi|254780445|r 92 FNACFVPGWDCHGLPIEWKVENEYLAKG-KKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESE 170 (963)
Q Consensus 92 ~~Vl~~~GwD~hGLPiE~~vek~l~~~~-~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~ 170 (963)
|.|+|.||+|+.|+.++..|||+|...+ ++++++|+++|.++|++|-+++.+...+|++|||.+.||+|+++||||...
T Consensus 113 ~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s 192 (995)
T KOG0432 113 YQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLS 192 (995)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCCHHHH
T ss_conf 75332488663352479999999987158632114899999999999988585199999983573201475603477888
Q ss_pred HHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCE----------------EEEEEEECCCCCCCCCC
Q ss_conf 99999999999879611034302205743573650021013210577----------------99983303753112200
Q gi|254780445|r 171 AQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDS----------------ILVGFPVKSSADYLIKS 234 (963)
Q Consensus 171 ~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s----------------~~v~F~l~~~~~~~~~~ 234 (963)
+.+..+|.+||++|+|||+.+.|||||..+|++||.||+|.|+.++. ..++|++.++..
T Consensus 193 ~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~~aY~v~gs~~----- 267 (995)
T KOG0432 193 RAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDE----- 267 (995)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEECHHHHHHHHHHEECCEECCCCCEEECCCCCCCEEEEEEEEEEEECCCCCC-----
T ss_conf 999999999876484673375264136677565454001212588735734787762353234577876058987-----
Q ss_pred CCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEE
Q ss_conf 11000000578865445322776745899830665311112374355121118888876098517841001111128575
Q gi|254780445|r 235 QIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMC 314 (963)
Q Consensus 235 ~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~g~~l~g~~~ 314 (963)
.++|.||||+||+|++|+||||+-+ +++.|.|.++
T Consensus 268 ~i~VaTTRpET~lGDvAvAVhP~D~---------------------------------------------RYk~lhGk~~ 302 (995)
T KOG0432 268 EIVVATTRPETILGDVAVAVHPDDD---------------------------------------------RYKHLHGKFV 302 (995)
T ss_pred EEEEECCCCCCCCCCEEEEECCCCC---------------------------------------------CCCCCCCCEE
T ss_conf 3897348864111331577578776---------------------------------------------4300067544
Q ss_pred EECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 43137866512551144322332244540564057898898998760521221002203430234455102431001786
Q gi|254780445|r 315 SHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGA 394 (963)
Q Consensus 315 ~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~ 394 (963)
.|||.+ +.+|||.+.+|++++|||+|.+.|||++.||+ +++++||+.++.++++|.+++..++|.||
T Consensus 303 ~hP~~~----r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyE---------vgkRh~L~~~ni~~~dG~l~~~~gef~Gm 369 (995)
T KOG0432 303 KHPFTG----RKLPIICDIAVDMEFGTGAVKITPAHDPNDYE---------VGKRHNLEFINIFTDDGLLNNVCGEFKGM 369 (995)
T ss_pred ECCCCC----CCCCEEECCCCCCCCCCCCEEECCCCCHHHHH---------HHHHCCCCCEEEECCCCCEECCCHHCCCC
T ss_conf 347779----96656631102544566624736788806788---------88753998126785878532254100474
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH--C
Q ss_conf 32113554445675452356647982100000012211321013203333102366302245542368999987520--0
Q gi|254780445|r 395 RVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE--K 472 (963)
Q Consensus 395 ~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~--~ 472 (963)
+.|+ |+++|++.|+|.|++...+......|.|-||+..|++.+++|||++++. +..+|+++++ +
T Consensus 370 ~RFe-------AR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~e-------ma~~A~~av~sG~ 435 (995)
T KOG0432 370 KRFE-------AREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKE-------MAKKALKAVESGK 435 (995)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHEEEHHH-------HHHHHHHHHHCCC
T ss_conf 7888-------9999999999841553167885252334777773360125400133799-------9999999874497
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECC-------CCCEEECCCHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 0002444343202443043200001123456722589825-------884732521124442122211887433564011
Q gi|254780445|r 473 IRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNE-------KGEILLDKAINDRIIKTFKDQGSDAWFSEGSRD 545 (963)
Q Consensus 473 v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e-------~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~~ 545 (963)
++++|+..+++..+|++|.+|||||||.|||+.||+|+.. .+..++..+..+......++.| +
T Consensus 436 L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~Wvv~rseeeA~ekaa~k~g-~--------- 505 (995)
T KOG0432 436 LEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFG-P--------- 505 (995)
T ss_pred EEECCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHC-C---------
T ss_conf 587755778789999751302121344430454642562024677766616885889999999999718-8---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 146887887554566421000033354543322-----222333443100255444211124554443311784000013
Q gi|254780445|r 546 FFLGDRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSL 620 (963)
Q Consensus 546 ~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~-----~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v 620 (963)
...-...|++|||||||+||+.++++++ +++..+||.++.-+|.|+..||+.+|.|++.-+.|+.||+.|
T Consensus 506 -----~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V 580 (995)
T KOG0432 506 -----GKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEV 580 (995)
T ss_pred -----CCCCEEECCCCHHHHHHHCCCCCCHHCCCCCCCCCHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHE
T ss_conf -----532125148427776664153321104896556418762984154327527899999999965555177773411
Q ss_pred CCCCCEECCCCCCHHCCCCCCCCHHHHHC-------------------------------------CCCHHHHHHHHHHC
Q ss_conf 03782621345300001234433366411-------------------------------------36757887888717
Q gi|254780445|r 621 ITHGFSVDENGEKMSKSKGNVVFPEEIIS-------------------------------------ESGADVLRYWAVNS 663 (963)
Q Consensus 621 ~~hG~vld~~G~KMSKS~GNvi~p~~ii~-------------------------------------~yGaD~lR~~~~~~ 663 (963)
+.||+|+|.+|||||||+||||||.++|+ +.|+|||||.+++-
T Consensus 581 ~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~ 660 (995)
T KOG0432 581 LLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSY 660 (995)
T ss_pred EECHHHCCCCCCCCCHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
T ss_conf 44212113524522110045248888752312999999987279998999999877775367887433538999999871
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -876655443102567776400000110000012244-445673--1011127888754368999999889876540122
Q gi|254780445|r 664 -DYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAH-DTGNEP--SLADMPALEQLMLHRLTELDQVVREAYDAFNFKE 739 (963)
Q Consensus 664 -~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~-~~~~~~--~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~ 739 (963)
--++|++++-+.+.+...|.+||||+.||.++.+.. +.+... ...+....|+|||++|+.+++.+.+.|++|+|+.
T Consensus 661 ~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~ 740 (995)
T KOG0432 661 TTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHL 740 (995)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 25676444418987668999999999999998743557888822356877410689999999999999985112001677
Q ss_pred HHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC----CEE
Q ss_conf 6688998786302400101020122278998089999999999999999999700044899999986388677----345
Q gi|254780445|r 740 VVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAV----SVH 815 (963)
Q Consensus 740 a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~----SI~ 815 (963)
|.+++++|...+||+.|++.+|.-+|.+. ...+..+..||+.|++.-++||+|||||+|||+||.|+.... ||.
T Consensus 741 at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEelwqrlP~r~~~~~~si~ 818 (995)
T KOG0432 741 ATSALYAFWLYDLCDVYLEATKPLLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPASIS 818 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 89999999999998999998558762893--4544667889999999889984574403089999856678899987236
Q ss_pred ECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHH---HHHHHCCCCHHHHEEECE
Q ss_conf 33588998356898999999999999999999999999738999744403899829689---997722113655112041
Q gi|254780445|r 816 LELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSS---LISNIEGENLAEICITSD 892 (963)
Q Consensus 816 ~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~~---~l~~l~~~~L~~~~ivS~ 892 (963)
.++||...+.|.|+++|..++.+.++...+++ +|+.-.+..+.+..|.+..+++. .++.+ ...+..+..++.
T Consensus 819 va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRs----lra~y~l~~~~~~~v~i~~s~~~~~~~l~~~-~~~i~~l~~~~~ 893 (995)
T KOG0432 819 VSPYPSSNELWRNEELESAFELVLAITRAIRS----LRAEYNLSPKPRGSVFIASSDEEDKSILKEF-LDEISTLTNLEL 893 (995)
T ss_pred ECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEEEECCCCCCHHHHHHH-HHHHHHHHCCCE
T ss_conf 25886221144788999999999999999998----7775188877763699805897435689999-999987521351
Q ss_pred EEEECCCC
Q ss_conf 69963777
Q gi|254780445|r 893 ITIVHSNG 900 (963)
Q Consensus 893 v~i~~~~~ 900 (963)
|.+.....
T Consensus 894 v~i~~~~~ 901 (995)
T KOG0432 894 VSISSPAE 901 (995)
T ss_pred EEECCCCC
T ss_conf 56447875
No 16
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1196.26 Aligned_cols=695 Identities=23% Similarity=0.336 Sum_probs=534.8
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 96897799999998647614454056888848996282255889-76215778566878998767089826788882444
Q gi|254780445|r 25 KLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGH-IHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCH 103 (963)
Q Consensus 25 ~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~-lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~h 103 (963)
++.+||+|||++|.++++|+...+.-.++|||.+.|..|||||. |||||++||||+||++||+||+|||||||||||+|
T Consensus 2 ~~~~IE~KWq~~W~~~~~~~~~~dpi~~~~K~YiL~MFPYPSG~GLH~GHvR~YTItDvl~Ry~r~~GynVLHP~GwDAF 81 (916)
T TIGR00396 2 NHIEIEKKWQQKWAENKTFKTTDDPISNKPKYYILSMFPYPSGAGLHMGHVRNYTITDVLSRYKRMKGYNVLHPMGWDAF 81 (916)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 70001157888732378565200554557864662378795607750165142357649999998628832476675745
Q ss_pred CCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHC
Q ss_conf 20899999998765599833489999999999999999999999999706077636981157767989999999999987
Q gi|254780445|r 104 GLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAES 183 (963)
Q Consensus 104 GLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~k 183 (963)
|||+|++|.+.. . .| ..|+.+||+.|++||+.||+++||+||..||||+||+|+||+|.+||++
T Consensus 82 GLPAEnaAI~~~----~-----~P-------~~WT~~NI~~m~~Ql~~LGf~yDw~RE~~T~~P~YYkwtQWiF~~Lf~k 145 (916)
T TIGR00396 82 GLPAENAAIKRG----I-----HP-------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEK 145 (916)
T ss_pred CCCHHHHHHHCC----C-----CC-------HHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 642589998648----9-----87-------0037899999999999845564411053238887433666888999762
Q ss_pred CCEECCCCEEEECCCCCCCCCCHHHE-EEEE-------------------------------------------------
Q ss_conf 96110343022057435736500210-1321-------------------------------------------------
Q gi|254780445|r 184 DQIYRGIKPIMWSIAEQTTLAEAEIE-YHDV------------------------------------------------- 213 (963)
Q Consensus 184 Gliyr~~~pV~w~p~~~T~La~~Eve-y~d~------------------------------------------------- 213 (963)
||+|+...+|||||.++|||||+||. ..|.
T Consensus 146 GLaY~ke~~VNWCP~d~TVLANEqVi~DS~Gna~SwR~~~~Vekk~l~QW~LKIT~YAe~LL~dLe~L~D~WP~~VK~MQ 225 (916)
T TIGR00396 146 GLAYVKEATVNWCPNDGTVLANEQVIIDSDGNARSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDDHWPESVKEMQ 225 (916)
T ss_pred CCEEEEEEEEEECCCCCCCCCCHHEEECCCCCCEEECCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHCC
T ss_conf 85276311133067778451020301227898532248784466306751011337889854114204678873136404
Q ss_pred -----ECCEEEEEEEECCC--CCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCH
Q ss_conf -----05779998330375--31122001100000057886544532277674589983066531111237435512111
Q gi|254780445|r 214 -----DSDSILVGFPVKSS--ADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNL 286 (963)
Q Consensus 214 -----~~~s~~v~F~l~~~--~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~ 286 (963)
+|.++.|.|++.|. ..--.+-.+.|+||||+||||.|.++|.|+|.- ++........ +.+ ++.
T Consensus 226 rNWIGkS~Gv~~~F~i~d~clkacn~~e~i~VFTTRPdT~fGvtYlalA~~HpL--v~~~~~~~~~-----~~v---~~f 295 (916)
T TIGR00396 226 RNWIGKSEGVEITFKIADHCLKACNKKEKIAVFTTRPDTIFGVTYLALAPEHPL--VEKIAKNNPK-----EEV---AAF 295 (916)
T ss_pred CCCCCEEEEEEEEEEECCCHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCHH--HHHHHHCCCH-----HHH---HHH
T ss_conf 545655520489974257312103787516998668630100265766157858--9999740846-----789---999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCC--EEEEECCCCHHHHHHHHHCCCH
Q ss_conf 88888760985178410011111285754313786651255114432233224454--0564057898898998760521
Q gi|254780445|r 287 AQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTG--FVHVAPSHGVEDFTAWNEAKDI 364 (963)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG--~Vh~aPahg~~Dy~~~~~~~~~ 364 (963)
+.........+.+.....+..-+.|.+++|||+++ ++||+.|+||.++|||| +||.||||+++||+||+++...
T Consensus 296 i~~~~~~~~~~~~~~~~~k~Gv~tg~~AihPlT~e----~iPiwvAnYVl~~YGTgPsAVMGVPaHDeRDF~FA~~~~Lp 371 (916)
T TIGR00396 296 IKKIAQKSDLERTKETKEKKGVFTGIYAIHPLTGE----KIPIWVANYVLASYGTGPSAVMGVPAHDERDFEFAQKYKLP 371 (916)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCEEECCCCCC----CCCEEEECEEECCCCCCCHHCCCCCCCCCCHHHHHHHCCCC
T ss_conf 99987307055556642014646686363476776----44557633001157898502035888874127999857897
Q ss_pred HHH---------H---------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
Q ss_conf 221---------0---------0220343023445510243100178632113554445675452356647982100000
Q gi|254780445|r 365 LLN---------R---------SVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIV 426 (963)
Q Consensus 365 ~~~---------~---------~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~ 426 (963)
+.. . +.|..+-++...+|.+|.+.++|.|+.- .+|++.|+..|.+.+.
T Consensus 372 i~~Vi~~~~~~~~~~~~~~A~t~~g~~~ns~tstdGvltkeC~~f~Gl~~-------~~A~~~I~~~L~~~~~------- 437 (916)
T TIGR00396 372 IKVVIDPADADGKNLKLEQAYTEDGVLVNSSTSTDGVLTKECGEFNGLNS-------SEAKEAIIKMLEKEGK------- 437 (916)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCC-------HHHHHHHHHHHHHCCC-------
T ss_conf 15875277766751156676764652216876534410100022237761-------7899999999986388-------
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 01221132101320333310236630224554236899998752000002444343202443043200001123456722
Q gi|254780445|r 427 KHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPI 506 (963)
Q Consensus 427 ~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PI 506 (963)
.|..|.|| +|||.||||||||+||
T Consensus 438 ---------gk~~v~Yr-----------------------------------------------LRDW~~SRQRYWG~PI 461 (916)
T TIGR00396 438 ---------GKRKVNYR-----------------------------------------------LRDWLFSRQRYWGEPI 461 (916)
T ss_pred ---------CCEEEEEE-----------------------------------------------EECCCEEEECCCCCCC
T ss_conf ---------50212346-----------------------------------------------5325344000268898
Q ss_pred EEEECCCCCEEECC--CHHHHHHHHHH--HCC---CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 58982588473252--11244421222--118---874335640111468878875545664210000333545433222
Q gi|254780445|r 507 CFFYNEKGEILLDK--AINDRIIKTFK--DQG---SDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLGK 579 (963)
Q Consensus 507 Pi~~~e~~~~~~~~--~~~~~i~~~~~--~~g---~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~~ 579 (963)
||.|||+|+.++.+ .+.-.+++... ..| ++.+-..++. ...++.|+.+.+|||||||+|.|| |||+++.-
T Consensus 462 Piih~e~g~~~P~~~~dLPv~LP~~~~~~~~G~~~sPL~~~~~W~-~v~~~~~~~~A~RETdTMdtf~~S--sWYylRY~ 538 (916)
T TIGR00396 462 PIIHCEDGGAVPVPEEDLPVKLPELVNYDGSGTGESPLSRIKEWV-NVTCPSCGKPALRETDTMDTFIGS--SWYYLRYL 538 (916)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCE-EECCCCCCCCCCCCCCCCCCHHHH--HHHHHHCC
T ss_conf 778806768424434468710750023578889888043074632-414788798754337876305777--89998603
Q ss_pred ------------------CCCCCCCCCCCCCCCCCC--------CHHHHHHHHHHH-HCCC----CCEEEEECCCCCEEC
Q ss_conf ------------------223334431002554442--------111245544433-1178----400001303782621
Q gi|254780445|r 580 ------------------DPKLAWPADVYLEGSDQH--------RGWFQHSLLESC-ATRG----STPFTSLITHGFSVD 628 (963)
Q Consensus 580 ------------------~~~~~~PaD~~~eG~Dq~--------RgWF~s~ll~~~-~~~~----~~Pfk~v~~hG~vld 628 (963)
..++|.|+|+||+|++ | ||| | -+|... .+.. +.|||+|++||||+.
T Consensus 539 ~p~~n~~FWPi~~~~d~e~~~~wlPVD~YiGG~E-HAiLHLLY~RF~-h-K~L~D~g~v~~PaGi~EPFkKL~~QGMVlg 615 (916)
T TIGR00396 539 DPKNNTNFWPIDQPFDKEKAEYWLPVDLYIGGIE-HAILHLLYARFF-H-KFLYDLGLVSTPAGIKEPFKKLINQGMVLG 615 (916)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEECCHH-HHHHHHHHHHHH-H-HHHHHCCCCCCCCCCCCHHHHHHHCCEEEC
T ss_conf 5001766687321302788975588441026268-998998888999-9-999745761587766571455420000211
Q ss_pred -------CCCC------------------------------------CHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HCC
Q ss_conf -------3453------------------------------------00001234433366411367578878887-178
Q gi|254780445|r 629 -------ENGE------------------------------------KMSKSKGNVVFPEEIISESGADVLRYWAV-NSD 664 (963)
Q Consensus 629 -------~~G~------------------------------------KMSKS~GNvi~p~~ii~~yGaD~lR~~~~-~~~ 664 (963)
++|+ ||||||||+|||.++|++||||++|||+| .||
T Consensus 616 ~~f~y~~~~g~~~W~~p~d~~~~~d~~~d~~~~~d~~~~~~~~~~~~KMSKSK~N~i~P~e~~~~yGADa~Rlf~mF~~P 695 (916)
T TIGR00396 616 DAFYYKKPNGKRIWVVPADELIERDEKGDIKKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKYGADALRLFIMFMGP 695 (916)
T ss_pred CCEEECCCCCCEEEEECCCCEEECCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHCCC
T ss_conf 61341389973677645751661046678654232588824788777620236798870389740480279999970488
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--C---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q ss_conf 76655443102567776400000110000012244--4---456731011127888754368999999889876540--1
Q gi|254780445|r 665 YHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAH--D---TGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFN--F 737 (963)
Q Consensus 665 ~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~--~---~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~--f 737 (963)
+..++.|++++|.++.+|+.|+||-+.-..+..+. + .........++..++-+.+.++.++++|+++++.-+ |
T Consensus 696 ~~~~L~W~~~g~~G~~RFL~RVw~l~~~~~~~~~~~~~avrP~~~~~~~~l~~~~~~~~~~~~~~lk~v~e~~~~~~~~f 775 (916)
T TIGR00396 696 IAASLEWNESGLEGARRFLDRVWNLVKEILGELSGIISAVRPKTELTETALEEAQKELRREVHKFLKKVTEDLEKLELSF 775 (916)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 31414777111013568889999999873266000255424610034311230468999999999988875317620135
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEC
Q ss_conf 22668899878630240010102012227899808999999999999999999970004489999998638867734533
Q gi|254780445|r 738 KEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLE 817 (963)
Q Consensus 738 ~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~~ 817 (963)
|+|++.+|.|+|. | +....++. ++. ++...+..+++||+||+||+|||+|+.|+.+..+++.+
T Consensus 776 NT~IS~~M~l~N~-L------------~k~~~~ge-~~~---~~~e~~~~~~~~L~P~aPhlaeELwe~lg~~~~~~~~~ 838 (916)
T TIGR00396 776 NTAISAMMELLNA-L------------YKATKDGE-DRA---LYLEYLKGLVTVLSPFAPHLAEELWEKLGSEPSIIKQA 838 (916)
T ss_pred HHHHHHHHHHHHH-H------------HHHCCCCH-HHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 5899999999999-8------------73102341-158---89999998998851520168999999857770015441
Q ss_pred CCCCCCHHHCCHHHHHH-HHHHHHHHHHH
Q ss_conf 58899835689899999-99999999999
Q gi|254780445|r 818 LFPIIPLEWQNACLSKK-WGKILQLRKVV 845 (963)
Q Consensus 818 ~wP~~~~~~~d~~le~~-~~~l~~ir~~V 845 (963)
.||.+|+... .+.+ +..+++++..+
T Consensus 839 ~w~~~D~~~l---~~d~k~~iv~~~nGK~ 864 (916)
T TIGR00396 839 KWPKVDETAL---VEDKKVEIVVQVNGKV 864 (916)
T ss_pred CCHHHCHHHH---HCCCEEEEEEEEEEEE
T ss_conf 1202124654---1252058999974268
No 17
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1113.88 Aligned_cols=800 Identities=21% Similarity=0.305 Sum_probs=625.7
Q ss_pred HHHHHHHHHHHHCCCCHHH----------HHCCC---CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9779999999864761445----------40568---8884899628225588976215778566878998767089826
Q gi|254780445|r 28 QKESELITYWQKIRLFDKI----------RESAV---GRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNA 94 (963)
Q Consensus 28 ~~E~~~~~~W~~~~~f~~~----------~~~~~---~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~V 94 (963)
.||.|||+.|+++++||.. ++.++ .-|||++--.-||+||.||+||.+|+|+.|++|||+||+||||
T Consensus 2 ~IE~Kwqk~W~~~~iFe~daPsieDePitpd~~ElhrtYPKff~t~AYPYlnG~lHaGH~rT~t~~e~~arF~RM~Gknv 81 (1109)
T TIGR00395 2 AIEKKWQKRWEEAKIFEADAPSIEDEPITPDDRELHRTYPKFFLTVAYPYLNGVLHAGHLRTFTIPEVVARFERMKGKNV 81 (1109)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEE
T ss_conf 41256787355447751477765678888861134311550320157655674421233443331315887661068400
Q ss_pred CCCCCCCCCCCHHHHHH--------HHH-------------H------------------------HHCCCCH-------
Q ss_conf 78888244420899999--------998-------------7------------------------6559983-------
Q gi|254780445|r 95 CFVPGWDCHGLPIEWKV--------ENE-------------Y------------------------LAKGKKK------- 122 (963)
Q Consensus 95 l~~~GwD~hGLPiE~~v--------ek~-------------l------------------------~~~~~~~------- 122 (963)
|||+||||.|+|| +.. |+. + +.+|...
T Consensus 82 LFPlGfHvTG~Pi-lg~A~~i~~~de~t~~~Y~~~h~eeeeikeetPaekDheDvtkfkakkskaaakkGrGkYqfeiml 160 (1109)
T TIGR00395 82 LFPLGFHVTGTPI-LGLAELIKRRDEKTIKVYTEVHAEEEEIKEETPAEKDHEDVTKFKAKKSKAAAKKGRGKYQFEIML 160 (1109)
T ss_pred CCCCCCCCCCCCH-HHHHHHHHHCCHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 2246544358627-889999730060467885205751344301577644414566665444356664178731245633
Q ss_pred -HHCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCEEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEECCCCEEEECC
Q ss_conf -34899999999--999999999999999997060776369811577--6798999999999998796110343022057
Q gi|254780445|r 123 -DDIPVNEFRQA--CRDSASAWVKIQSKEFQRLGIVGDFENPYTTMT--RESEAQIASELLKIAESDQIYRGIKPIMWSI 197 (963)
Q Consensus 123 -~~~~~~~~~~~--c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d--p~y~~~~~~~F~~l~~kGliyr~~~pV~w~p 197 (963)
-.++.+++.+. ...++++|.....+.|++||+|+||||.|.|.| |.|.+|++|||.||.+.|||.+|.|||-|||
T Consensus 161 qlGiP~eel~~l~dpe~iveYFs~~~~~~~~~~G~siDWRR~F~TtDan~~Y~~FI~WQ~~KLk~~Gli~kG~hpv~Ycp 240 (1109)
T TIGR00395 161 QLGIPREELLKLTDPEYIVEYFSREAESALKSMGYSIDWRREFKTTDANPVYDRFIEWQIRKLKELGLIVKGEHPVRYCP 240 (1109)
T ss_pred ECCCCHHHHHHHCCCCEEEECCCHHHHHHHHHCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 13798799972048430210388779999986488052255521258746667899999999986595441786602377
Q ss_pred CCCCCCCCHHHEEEEEEC--CEEEEEEEECCCCC-------------CCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 435736500210132105--77999833037531-------------122001100000057886544532277674589
Q gi|254780445|r 198 AEQTTLAEAEIEYHDVDS--DSILVGFPVKSSAD-------------YLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGL 262 (963)
Q Consensus 198 ~~~T~La~~Evey~d~~~--~s~~v~F~l~~~~~-------------~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~ 262 (963)
.|+.|+.||.+--.+... --+.|||.+.+..+ .-.+.|++++|.||||+||.|+|||||+.+|+.
T Consensus 241 ~d~npv~DHD~l~GE~vt~~ey~~~Kf~~~d~~DDaakiiDsssDlDkskk~~~v~ATLRPET~yG~Tn~wv~P~~~Yv~ 320 (1109)
T TIGR00395 241 KDENPVEDHDLLSGEGVTIVEYILIKFKLEDGADDAAKIIDSSSDLDKSKKLYFVAATLRPETVYGVTNVWVNPDITYVI 320 (1109)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHCCEEEEECCCCCEEE
T ss_conf 77685445553335643301036766664277530245431111010145166403568874100755355557751689
Q ss_pred EEECCCC----CCCCCCCCCEEEECCCHHHHHHHHCCC----CEEEEEECCCCCCCCCEEEEC-CCCCCCCEEEECCCCC
Q ss_conf 9830665----311112374355121118888876098----517841001111128575431-3786651255114432
Q gi|254780445|r 263 YDVISCS----GQHTFDTGKKLIISKNLAQSIANQTNV----KIALVCDVKAEDLSKTMCSHP-LKKLGYTFSVPLIDAE 333 (963)
Q Consensus 263 ~~~~~~~----~~~~~~~~~~~i~a~~~~~~~~~~~~~----~~~~~~~~~g~~l~g~~~~~P-l~~~~~~~~~pi~~~d 333 (963)
+++.... +.... ++.-||+|+++++++..+... =++++.++.|++|+|+.+.+| +++. ++||++|+
T Consensus 321 ~~~~~e~etenGieli-enGiwi~~~~A~~~L~yq~~~PkrGf~~~~~~v~g~~liG~~v~~Pq~v~~----e~pILPa~ 395 (1109)
T TIGR00395 321 AEVGGEKETENGIELI-ENGIWIVSKEAVENLSYQKLKPKRGFLKVIEEVDGKQLIGKKVKNPQVVGK----EVPILPAE 395 (1109)
T ss_pred EEECCCCCHHHHHHHH-HCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECHHHHCCCEEECCCCCCC----CCCCCCCC
T ss_conf 9733740012004455-422577789999604343458874227886530734241764457732589----77547701
Q ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHCC-CHHHHHCCCE-E-------EE--ECCCC----------------------
Q ss_conf 23322445405640578988989987605-2122100220-3-------43--02344----------------------
Q gi|254780445|r 334 YVANDCGTGFVHVAPSHGVEDFTAWNEAK-DILLNRSVDI-K-------VP--SPVDG---------------------- 380 (963)
Q Consensus 334 ~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~-~~~~~~~~~l-~-------~~--~~vd~---------------------- 380 (963)
||+++.|||||+|||||+|.||.+..|++ +...-.+||+ + ++ ..||.
T Consensus 396 fV~~~~gTGvV~sVPahaP~Dyia~~DL~~d~E~l~~YGi~k~~v~di~~v~~i~~~~yG~~pA~~ive~~gi~sq~dk~ 475 (1109)
T TIGR00395 396 FVDTEKGTGVVMSVPAHAPADYIALEDLKRDEELLEKYGIIKDVVEDIEPVPLIKVDGYGDLPAKEIVEELGIKSQKDKN 475 (1109)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCHH
T ss_conf 12678885478841788703589998607780145532773246641485567630887775489999882888877202
Q ss_pred ---------------CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCC-CCCCCCCCEEEE-
Q ss_conf ---------------551024310017863211355444567545235664798210000001221-132101320333-
Q gi|254780445|r 381 ---------------RGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYP-HSWRSKKPIIFR- 443 (963)
Q Consensus 381 ---------------~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP-~cwR~~~pii~r- 443 (963)
.|.|.++++.|.|+.| .+|+++|-++|...|+.--...+.-+ | .| |||+++|++
T Consensus 476 ~L~~Atk~~YK~ey~~Gvm~~~~~~Y~G~kV-------~eak~~v~~dL~~~GlA~v~yEFsE~-~Vic-RcG~~CiV~v 546 (1109)
T TIGR00395 476 LLEEATKELYKEEYHTGVMIENILDYKGMKV-------SEAKEKVKEDLIDKGLADVMYEFSEK-PVIC-RCGTKCIVKV 546 (1109)
T ss_pred HHHHHHHHHCHHHCCCEEECCCCCCCCCCCH-------HHHHHHHHHHHHHCCCCEEECCCCCC-CEEE-CCCCCCEEEE
T ss_conf 4788740022132150032047757886117-------99999999999853786020165788-5120-2679606988
Q ss_pred EEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEE---EECC---CCCEE
Q ss_conf 31023663022455423689999875200000244434320244304320000112345672258---9825---88473
Q gi|254780445|r 444 TTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICF---FYNE---KGEIL 517 (963)
Q Consensus 444 ~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi---~~~e---~~~~~ 517 (963)
+.||||++ |++..||++|+++|++|+++|+..|+.|++-|++++||+|||.+++||.||+ |..| |++++
T Consensus 547 ~~DQWF~~-----Ys~~~WK~~a~~CLegM~~ip~~~k~~F~~~idWL~dwAc~Rr~GLGTrlPwde~wliESLsDSTIY 621 (1109)
T TIGR00395 547 VEDQWFVK-----YSDESWKELAHECLEGMRIIPEEVKEAFEEKIDWLKDWACARRKGLGTRLPWDEKWLIESLSDSTIY 621 (1109)
T ss_pred ECCEEEEE-----CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCCCCHHH
T ss_conf 51600111-----4515689999987433732768888888776664236304612467777875675477127623256
Q ss_pred ECCCHHHHHHHHHH--HC----CCCC-CCCCCCHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC
Q ss_conf 25211244421222--11----8874-3356401114-68878875545664210000333545--43322222333443
Q gi|254780445|r 518 LDKAINDRIIKTFK--DQ----GSDA-WFSEGSRDFF-LGDRASEPWIQSKDILDVWFDSACTH--TILLGKDPKLAWPA 587 (963)
Q Consensus 518 ~~~~~~~~i~~~~~--~~----g~d~-~~~~~~~~~~-~~~~~~~~~~r~~DvlDvWfDSg~s~--~~~~~~~~~~~~Pa 587 (963)
+.++++.|.+.... .+ |+.+ -.+.+..|++ +++..-+...+.+. ++- .--++++|+||||+
T Consensus 622 ~aYYtiA~~l~~~~~g~EiGPlGisaD~mt~E~fDyifl~~gdV~K~Ak~t~---------ip~~~~~~lR~eF~Y~YPl 692 (1109)
T TIGR00395 622 MAYYTIAKYLNKDDLGNEIGPLGISADQMTDEFFDYIFLGKGDVDKVAKNTN---------IPLELIEKLREEFEYWYPL 692 (1109)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHCCCCCHHHHHHHHC---------CCHHHHHHHHHHCCEECCC
T ss_conf 7899999998521457764555444200574452243238871567765407---------8888998755434100560
Q ss_pred CCCCCCCCCCCH--HHHHHHHHHHHCCC--CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHH-H
Q ss_conf 100255444211--12455444331178--400001303782621345300001234433366411367578878887-1
Q gi|254780445|r 588 DVYLEGSDQHRG--WFQHSLLESCATRG--STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV-N 662 (963)
Q Consensus 588 D~~~eG~Dq~Rg--WF~s~ll~~~~~~~--~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~-~ 662 (963)
|++++|+|.+-. =|| +.+|+|+|. .+| |++.++|+++ -+|+|||||+||++...+++++||||+.|||++ +
T Consensus 693 D~r~SgKDLi~NHLtFy--iF~HvAiFP~~~WP-rGi~vnG~~~-Leg~KmSkSkGn~l~l~~~vekfGADv~Rl~~~~a 768 (1109)
T TIGR00395 693 DWRISGKDLIPNHLTFY--IFHHVAIFPEKFWP-RGIVVNGYVL-LEGKKMSKSKGNVLTLKEAVEKFGADVARLYILDA 768 (1109)
T ss_pred CCCCCCCCCCHHHHHHH--HHHEEEECCCCCCC-CEEEEEEEEE-EECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 10024310103467766--44002424879897-6179975788-71734054547622388999872761899999731
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 787665544310256777640000011000001224444--567310111278887543689999998898765401226
Q gi|254780445|r 663 SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDT--GNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEV 740 (963)
Q Consensus 663 ~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~--~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a 740 (963)
+++.+|.+|...-+.+..+-+++|++-..=+....++-. ....+.+.++.+|+|++|+|++.|++++++|+++++++|
T Consensus 769 Ae~~~Dad~~~~e~~~~~~~L~~l~~~a~e~~~~~~GrPvl~e~GPaE~~~f~D~wl~~~l~~~i~~~~e~~~~~~~r~A 848 (1109)
T TIGR00395 769 AELVQDADWKESEVEGTKKRLERLYEFAEEITKKSDGRPVLLEVGPAEELSFIDRWLLSRLNKAIKEVTEAMENFQTRKA 848 (1109)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78721356106778999999999999999985430684011035777631052189999999999999999986667899
Q ss_pred HH-HHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 68-89987863024001010201222789980899999999999999999997000448999999863886773453358
Q gi|254780445|r 741 VR-QLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELF 819 (963)
Q Consensus 741 ~~-~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~~~w 819 (963)
++ +|+.|.. |+ .||+++.- ...+....++|..+|+++++|||||+||+|||||+.+.|+..||.+++|
T Consensus 849 ~~~~Lf~L~~-d~-~~Y~~r~g---------~~~~Devksvla~~l~~~i~LlaPf~Ph~aEe~w~~~lG~~~fV~~a~f 917 (1109)
T TIGR00395 849 VKAALFDLKA-DV-DWYRRRGG---------ENVKDEVKSVLARVLETWIKLLAPFAPHLAEEMWEEVLGKEGFVSLAKF 917 (1109)
T ss_pred HHHHHHHHHH-HH-HHHHHHCC---------CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999999999-99-99998648---------8400579999999999999983231216899999997088731136779
Q ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHH----HHHHHHHCC--CCCCCCCEEEEEEECC
Q ss_conf 8998356898999999999999999999----999999738--9997444038998296
Q gi|254780445|r 820 PIIPLEWQNACLSKKWGKILQLRKVVTS----ALEIERKAK--HIGSSLETAPTLYITD 872 (963)
Q Consensus 820 P~~~~~~~d~~le~~~~~l~~ir~~V~~----~le~~R~~k--~I~~slea~v~i~~~d 872 (963)
|.+++..+|.+++...+.|+++.++|+. ++... +.| +|-+|....|+|+.++
T Consensus 918 P~~~~~~v~~~v~~~eeylrn~~~dI~EGeGqalkkk-kGki~~i~~~~P~~v~l~~s~ 975 (1109)
T TIGR00395 918 PEASEEAVDKEVEKAEEYLRNLVRDIQEGEGQALKKK-KGKIAKIVASKPKRVYLYTSE 975 (1109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC-CCCEEEEECCCCEEEEEEECC
T ss_conf 8987502106899999999988865103665022410-784577525686289996378
No 18
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1027.96 Aligned_cols=682 Identities=24% Similarity=0.332 Sum_probs=502.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 88996897799999998647614454056888848996282255889762157785668789987670898267888824
Q gi|254780445|r 22 MRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWD 101 (963)
Q Consensus 22 ~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD 101 (963)
++++..++|+|||++|+++++|+...+.++. |||.+.++-|||||.|||||++|||+.||++||+||+|||||||||||
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~-~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwd 81 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKP-EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 81 (814)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCC
T ss_conf 6523578999999999865971068988877-755998678788887346854121089999999985697214567556
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHH
Q ss_conf 44208999999987655998334899999999999999999999999997060776369811577679899999999999
Q gi|254780445|r 102 CHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIA 181 (963)
Q Consensus 102 ~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~ 181 (963)
|+|||||+.|++. +. .| +.|+++||+.|++||++||+++||+|++.|+||+|++|+||+|.+|+
T Consensus 82 afGlPae~~A~~~----~~-----~P-------~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ 145 (814)
T COG0495 82 AFGLPAENAAIKI----GT-----DP-------AKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLY 145 (814)
T ss_pred CCCCHHHHHHHHH----CC-----CH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHH
T ss_conf 6686399999985----78-----96-------99999999999999998087612355456479647799999999999
Q ss_pred HCCCEECCCCEEEECCCCCCCCCCHHHEEEE-------E-ECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHH
Q ss_conf 8796110343022057435736500210132-------1-0577999833037531122001100000057886544532
Q gi|254780445|r 182 ESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD-------V-DSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIA 253 (963)
Q Consensus 182 ~kGliyr~~~pV~w~p~~~T~La~~Evey~d-------~-~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~ 253 (963)
++|||||+.+||||||.|+||||||||.... + .....-+.|++++..+.+.+......|.+|+|+.+.+..|
T Consensus 146 ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nW 225 (814)
T COG0495 146 EKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNW 225 (814)
T ss_pred HCCCEEECCCCCEECCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 77988852554310777697615412415876557885268666899999134299998666654247956699898727
Q ss_pred CCCCCCEEEEEECCCCC----CCCCCC------CCEEE-EC--CCHHHH------------HHHHCCCCEEEE-----EE
Q ss_conf 27767458998306653----111123------74355-12--111888------------887609851784-----10
Q gi|254780445|r 254 FSSNHQYGLYDVISCSG----QHTFDT------GKKLI-IS--KNLAQS------------IANQTNVKIALV-----CD 303 (963)
Q Consensus 254 v~p~~~Y~~~~~~~~~~----~~~~~~------~~~~i-~a--~~~~~~------------~~~~~~~~~~~~-----~~ 303 (963)
|+|+..|.+........ ...+.+ |=.++ +| ..+++. +.........+. .+
T Consensus 226 Ig~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~ 305 (814)
T COG0495 226 IGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAE 305 (814)
T ss_pred CCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 07888758998517764410024466357311674899970786678987418651669999988617871563045687
Q ss_pred CCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCC
Q ss_conf 01111128575431378665125511443223322445405640578988989987605212210022034302344551
Q gi|254780445|r 304 VKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGF 383 (963)
Q Consensus 304 ~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~ 383 (963)
.+|. ..|.+++||+++. .+||+.++||.+.+|||+||.+|||+++||+++ ++|++++...|...+.
T Consensus 306 k~gv-~~g~~a~~p~~~e----~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA---------~~y~l~i~~vi~~~~~ 371 (814)
T COG0495 306 KDGV-FLGGYAINPVNGE----KIPVWIANYVLMEYGTGAVMGVPAHDERDLEFA---------TKYKLPIKKVIMPEGT 371 (814)
T ss_pred CCCE-ECCCCCCCCCCCC----CCCEEEECCCCCCCCCCCEECCCCCCCHHHHHH---------HHCCCCEEEEEECCCC
T ss_conf 7631-1365024777788----677899674314555663545888870206899---------8528861799824887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHH
Q ss_conf 02431001786321135544456754523566479821000000122113210132033331023663022455423689
Q gi|254780445|r 384 YTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLR 463 (963)
Q Consensus 384 ~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k 463 (963)
.|..+... ....|+...-.|.... +.. -.| ||+ |+-+..+||||+. |
T Consensus 372 --------~~~~~~~~-------~g~linS~~~~gl~~e-~a~----~~~-~~~--l~~~~~~q~~v~Y----------~ 418 (814)
T COG0495 372 --------VGKKVYEG-------EGVLINSGGLDGLDYE-EAK----VKI-RCG--LVKRGLGQWFVNY----------R 418 (814)
T ss_pred --------CCCEEECC-------CCEEECCCCCCCCCCH-HHH----HHH-HHH--HHHHCCCCEEEEC----------C
T ss_conf --------66400114-------7457625433676405-679----999-986--8872378258851----------4
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECC--CHHHHHHHHHHHCCC--CCCC
Q ss_conf 999875200000244434320244304320000112345672258982588473252--112444212221188--7433
Q gi|254780445|r 464 SRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDK--AINDRIIKTFKDQGS--DAWF 539 (963)
Q Consensus 464 ~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~--~~~~~i~~~~~~~g~--d~~~ 539 (963)
+|||++|||||||+|||+.+||+|+.+..+ .+...++....-.|. ...+
T Consensus 419 ---------------------------lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~ 471 (814)
T COG0495 419 ---------------------------LRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPW 471 (814)
T ss_pred ---------------------------CCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf ---------------------------51577899997089964547423785547367667436641146798899988
Q ss_pred CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 56401114688788755456642100003335454332-------------22223334431002554442111245544
Q gi|254780445|r 540 SEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL-------------GKDPKLAWPADVYLEGSDQHRGWFQHSLL 606 (963)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~-------------~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll 606 (963)
...+ +-..+...+..|++||||+|++| |||..+ .+.+++|+|+|+|++|+| | ..+||
T Consensus 472 ~~~W---~~~s~~~s~~~ret~Tm~~~~~s--swy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~e-h----avlHL 541 (814)
T COG0495 472 DEEW---VIESLPDSTAYRETDTMDTFIDS--SWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIE-H----AVLHL 541 (814)
T ss_pred CCCE---EEEECCCCCEEEEHHHHHHHCCC--CCCCHHHCCHHCCCCCHHCHHHHHCCCCHHEEECCHH-H----HHHHH
T ss_conf 8361---79966998535323246576043--2101866581007543225788742067201226366-7----77889
Q ss_pred HHH-----HCCC------CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HCCCCCCCCCCCH
Q ss_conf 433-----1178------400001303782621345300001234433366411367578878887-1787665544310
Q gi|254780445|r 607 ESC-----ATRG------STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV-NSDYHDDQRLGKN 674 (963)
Q Consensus 607 ~~~-----~~~~------~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~-~~~~~~d~~~~~~ 674 (963)
+.. ++++ ..||+++++||||+.++|+|||||+||+|+|+++|++||||++|+|+| ++|+.+|+.|+++
T Consensus 542 ly~rF~hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~ 621 (814)
T COG0495 542 LYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSES 621 (814)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHH
T ss_conf 99999998834757787765044441142687427770454457888989999995840989999860877537887745
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
Q ss_conf 256777640000011000001224444567310111278887543689999998898765-4012266889987863024
Q gi|254780445|r 675 IIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDA-FNFKEVVRQLTNFSNAELS 753 (963)
Q Consensus 675 ~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~-~~f~~a~~~i~~F~~~dLS 753 (963)
.+++..++++++|+.+.-+.+.. ......++. ..|+|+++++ ++.|+++++. +.|++|+..+|.|++ +|
T Consensus 622 gv~g~~rfL~r~~~l~~~~~~~~----~~~~~~~~~-~~~~~~~h~~---~~~v~~~~e~~~~~nt~i~~~m~l~N-~l- 691 (814)
T COG0495 622 GVEGARRFLQRVWNLVKEHLEKL----VEELTKEQG-KEDRWLLHRT---IKKVTEDFEARQTFNTAIAALMELLN-AL- 691 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC----CCCCCCHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HH-
T ss_conf 64899999999999999864023----333553056-8899999999---99999999999889999999999999-99-
Q ss_pred CCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHCCH
Q ss_conf 0010102012227899808999999999999999999970004489999998638867734533588998356898
Q gi|254780445|r 754 SFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNA 829 (963)
Q Consensus 754 ~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~~~wP~~~~~~~d~ 829 (963)
.+|.+.... .+ .+|..+++.+++|||||+||+|||+|+.+++ +.+|+.++||++++...+.
T Consensus 692 ~~~~~~~~~----------~~----~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~-~~~v~~~~wP~~de~~l~~ 752 (814)
T COG0495 692 RKYLRRTEG----------DR----KVLREALETWVRLLAPFAPHIAEELWEELGN-EGFVSNAPWPEPDEEALVE 752 (814)
T ss_pred HHHHHHCCC----------HH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCEEECCCCCCCHHHCCC
T ss_conf 998750232----------07----8999999999999666664779999999669-9816417899877344165
No 19
>KOG0435 consensus
Probab=100.00 E-value=0 Score=891.21 Aligned_cols=661 Identities=22% Similarity=0.319 Sum_probs=481.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88999888996897799999998647614454056888848996282255889762157785668789987670898267
Q gi|254780445|r 16 PRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNAC 95 (963)
Q Consensus 16 Pkt~Fp~r~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl 95 (963)
+-+.-+.+...+.+|+.|+++|.+...|.+ +.+.+++||+| +..|||||.|||||.+.|||.|++|||+||+||||+
T Consensus 22 ~~~~~~~~~~~~~iEk~W~~~~~~~~~~~~--~~d~sk~KYiL-sMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVi 98 (876)
T KOG0435 22 YTHGCKKEIAIAMIEKHWKQYLKDGFPFSK--DSDKSKKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVI 98 (876)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEE-EECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEE
T ss_conf 676641556577777889998753786656--34357873699-736788876112642799725889999985486421
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHH
Q ss_conf 88882444208999999987655998334899999999999999999999999997060776369811577679899999
Q gi|254780445|r 96 FVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIAS 175 (963)
Q Consensus 96 ~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~ 175 (963)
+|||||+||||+|++|.+. |.. + +.|+.++|+.|++|+++||+++||+||..||+|+|++|+||
T Consensus 99 hPMGWDaFGLPAENAAier----gv~-----P-------~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQw 162 (876)
T KOG0435 99 HPMGWDAFGLPAENAAIER----GVH-----P-------ASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQW 162 (876)
T ss_pred CCCCCCCCCCCHHHHHHHC----CCC-----C-------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 5776303488356678754----889-----2-------05469899999999997376012455323478315678999
Q ss_pred HHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHE--------------------------EEE-----------------
Q ss_conf 9999998796110343022057435736500210--------------------------132-----------------
Q gi|254780445|r 176 ELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIE--------------------------YHD----------------- 212 (963)
Q Consensus 176 ~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Eve--------------------------y~d----------------- 212 (963)
+|.+||++||+||...+|||||.++|+||++||. |.+
T Consensus 163 iFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~ 242 (876)
T KOG0435 163 IFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKD 242 (876)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999971122111353665720121532201035575534565465778888986316889999999875030166899
Q ss_pred ------EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCH
Q ss_conf ------10577999833037531122001100000057886544532277674589983066531111237435512111
Q gi|254780445|r 213 ------VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNL 286 (963)
Q Consensus 213 ------~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~ 286 (963)
..+...-+-|++.+.... +.-+.+|||||+||++...+++.|+|.-+.... ++
T Consensus 243 mQrnWIG~~~G~el~F~ll~~~~~--de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~-------------------~l 301 (876)
T KOG0435 243 MQRNWIGRCDGAELMFPLLDDGSN--DEILTVYTTRPETLFGASFLVLAPSHSLLDKDS-------------------SL 301 (876)
T ss_pred HHHHHCCCCCCEEEEEEECCCCCC--CCEEEEEECCCHHHCCCEEEEECCCCHHHHHHC-------------------HH
T ss_conf 987431245420798783268778--745899945824422625799737754665303-------------------38
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHH
Q ss_conf 88888760985178410011111285754313786651255114432233224454056405789889899876052122
Q gi|254780445|r 287 AQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILL 366 (963)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~ 366 (963)
.+-+. ... . .. +|. +.+.++.||+++. .+||+.++||...+|||+||.+|+|+.+|++++.. +
T Consensus 302 kefl~-~~~--l---~~-Kg~-~lp~~A~Np~tg~----~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~-----~ 364 (876)
T KOG0435 302 KEFLS-KSD--L---PQ-KGV-QLPCQAKNPVTGR----AIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQK-----I 364 (876)
T ss_pred HHHHH-HHH--C---CC-CCC-CCCEEECCCCCCC----EEEEEEECHHCCCCCCCEEEECCCCCCCHHHHHHC-----C
T ss_conf 77644-443--2---36-675-3541431677776----20179851013677761045366766410688863-----4
Q ss_pred HHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEE
Q ss_conf 10022034302344551024310017863211355444567545235664798210000001221132101320333310
Q gi|254780445|r 367 NRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTS 446 (963)
Q Consensus 367 ~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~ 446 (963)
+.+....+-...++.|+-+... .+.|+.. ++.|..++++.++..|.- .+.-||
T Consensus 365 ~~~~~~~~~~~f~~~~K~~~~~-~~tn~~~------~q~a~~~l~~~~~~~g~g----~~~vs~---------------- 417 (876)
T KOG0435 365 GIKWIICIEVIFTNFGKKNEQK-AFTNLDI------RQNAALKLFQFAERKGVG----GYVVSY---------------- 417 (876)
T ss_pred CCEEEEEEEEEECCHHHHHCCC-CCCCHHH------HHHHHHHHHHHHHHCCCC----CCEECC----------------
T ss_conf 6406888743215624432022-5541557------888999999998743787----623211----------------
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCHH--H
Q ss_conf 23663022455423689999875200000244434320244304320000112345672258982588473252112--4
Q gi|254780445|r 447 QWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAIN--D 524 (963)
Q Consensus 447 QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~--~ 524 (963)
.++||.||||||||||||+.+|++|++++.++.. .
T Consensus 418 -------------------------------------------kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV 454 (876)
T KOG0435 418 -------------------------------------------KLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPV 454 (876)
T ss_pred -------------------------------------------HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf -------------------------------------------3355643222216898645876788864575887885
Q ss_pred HHHHH--HHHCCCCCCCCCCCHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCC
Q ss_conf 44212--22118874335640111--4688788755456642100003335454332222------------23334431
Q gi|254780445|r 525 RIIKT--FKDQGSDAWFSEGSRDF--FLGDRASEPWIQSKDILDVWFDSACTHTILLGKD------------PKLAWPAD 588 (963)
Q Consensus 525 ~i~~~--~~~~g~d~~~~~~~~~~--~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~~~------------~~~~~PaD 588 (963)
.+.++ +...|... ....++ ..|+.|+++.+|+|||||||+|| +||+++.-+ ..++-|+|
T Consensus 455 ~LP~l~~~~~kG~Pl---s~~~e~vn~~cP~cg~pAkRETDTMDTFvDS--sWYYlRylDpkN~e~~~d~a~a~k~MPVD 529 (876)
T KOG0435 455 TLPELNDFTPKGPPL---SKADEWVNVDCPRCGEPAKRETDTMDTFVDS--SWYYLRYLDPKNPEEPFDKAKAKKNMPVD 529 (876)
T ss_pred CCCCCCCCCCCCCCC---CCHHHHEECCCCCCCCCCCCCCCCCCHHHCC--CEEEEEECCCCCCCCCCCHHHHHCCCCEE
T ss_conf 465312357889964---1236561356866799643455541001003--13567623789854544255653268615
Q ss_pred CCCCCCCCC--------CHHHHHHHHHHHHC-CCCCEEEEECCCCCEECC------CC----------------------
Q ss_conf 002554442--------11124554443311-784000013037826213------45----------------------
Q gi|254780445|r 589 VYLEGSDQH--------RGWFQHSLLESCAT-RGSTPFTSLITHGFSVDE------NG---------------------- 631 (963)
Q Consensus 589 ~~~eG~Dq~--------RgWF~s~ll~~~~~-~~~~Pfk~v~~hG~vld~------~G---------------------- 631 (963)
+|++|++ | ||| +-.|.++.+ .+..||+.+++||||++. .|
T Consensus 530 vYIGG~E-HAvlHLlYaRF~--~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~ 606 (876)
T KOG0435 530 VYIGGKE-HAVLHLLYARFI--AKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKN 606 (876)
T ss_pred EEECCHH-HHHHHHHHHHHH--HHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCCEEEECC
T ss_conf 8855489-999999999999--9987552877688748888751000341786277776278777666347766357537
Q ss_pred ---------CCHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-
Q ss_conf ---------300001234433366411367578878887-178766554431025677764000001100000122444-
Q gi|254780445|r 632 ---------EKMSKSKGNVVFPEEIISESGADVLRYWAV-NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHD- 700 (963)
Q Consensus 632 ---------~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~-~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~- 700 (963)
+|||||++|+|||.+++++||+|++|+|++ ++++.++++|+++.+.++.+.+.|+|++..-++..-.+-
T Consensus 607 ~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~ 686 (876)
T KOG0435 607 DKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGK 686 (876)
T ss_pred CCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99503544887320235798989999884831778999861786566666633245499999999999887777775278
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHH
Q ss_conf 4567-31011127888754368999999889876540-122668899878630240010102012227899808999999
Q gi|254780445|r 701 TGNE-PSLADMPALEQLMLHRLTELDQVVREAYDAFN-FKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSI 778 (963)
Q Consensus 701 ~~~~-~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~-f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~ 778 (963)
.... .......+.++-+....|.++++|+++|+.-. +++|+..+|.|.|+ |+.-+ |. ....+.
T Consensus 687 ~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~-l~~a~----k~----~~~h~~------ 751 (876)
T KOG0435 687 AKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNA-LKKAL----KI----VLVHSP------ 751 (876)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HH----HHHCCH------
T ss_conf 6556544443313678999999999987567888888888999999988789-98752----33----411473------
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHC
Q ss_conf 9999999999999700044899999986388677345335889983568
Q gi|254780445|r 779 AVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQ 827 (963)
Q Consensus 779 ~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~~~wP~~~~~~~ 827 (963)
....+++.|++||||++||+|+|+|..|..+..-+....||+++....
T Consensus 752 -~~~~al~~lv~mlaP~aPh~asE~Ws~l~~~~~~~~~~~WP~vd~~~~ 799 (876)
T KOG0435 752 -EFERALEALVIMLAPFAPHVASELWSALANDLSWVSDVKWPEVDPDYL 799 (876)
T ss_pred -HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCHHHH
T ss_conf -788999999999712575458999999842240131167765784464
No 20
>KOG0437 consensus
Probab=100.00 E-value=0 Score=738.43 Aligned_cols=747 Identities=19% Similarity=0.287 Sum_probs=531.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHH--HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88996897799999998647614454--0568888489962822558897621577856687899876708982678888
Q gi|254780445|r 22 MRAKLPQKESELITYWQKIRLFDKIR--ESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPG 99 (963)
Q Consensus 22 ~r~~~~~~E~~~~~~W~~~~~f~~~~--~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~G 99 (963)
.|..+.++|.++|+.|++.++|+... +..+++|||.---+-||+||.||+||+++-.--|+.+-|+||+|++||||+|
T Consensus 10 r~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfg 89 (1080)
T KOG0437 10 RRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFG 89 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEECCCCCCCCCEECCCEEEHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 89999999999987640211100357021055667516843650217602123010023548888999845854774033
Q ss_pred CCCCCCHHHHHHHH--------------------HH-------------HHCCCCH---HH---------------CCHH
Q ss_conf 24442089999999--------------------87-------------6559983---34---------------8999
Q gi|254780445|r 100 WDCHGLPIEWKVEN--------------------EY-------------LAKGKKK---DD---------------IPVN 128 (963)
Q Consensus 100 wD~hGLPiE~~vek--------------------~l-------------~~~~~~~---~~---------------~~~~ 128 (963)
|+|.|+||-.-|.| +. ..+|++- .. ++.+
T Consensus 90 FHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~de 169 (1080)
T KOG0437 90 FHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDE 169 (1080)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHH
T ss_conf 35479701775799999999738999981443145652156620112310035205777760464026999998099988
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCC--HHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCC
Q ss_conf 9999--9999999999999999997060776369811577--67989999999999987961103430220574357365
Q gi|254780445|r 129 EFRQ--ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMT--RESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLA 204 (963)
Q Consensus 129 ~~~~--~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d--p~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La 204 (963)
|+.+ ....|...|--.-..+++|+|.-+||+|+|.|.| |.|.+++.|||.+|.+.|.|..|.|...|||.+++++.
T Consensus 170 EI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCm 249 (1080)
T KOG0437 170 EIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCM 249 (1080)
T ss_pred HHHCCCCHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCC
T ss_conf 81316671378884883778999984788642330130566545788999999988860785547603663678898553
Q ss_pred CHHHEEEEEECCEEEEEEE--ECCC------CCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 0021013210577999833--0375------3112200110000005788654453227767458998306653111123
Q gi|254780445|r 205 EAEIEYHDVDSDSILVGFP--VKSS------ADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDT 276 (963)
Q Consensus 205 ~~Evey~d~~~~s~~v~F~--l~~~------~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~ 276 (963)
||.-.-.+.++|.-|+..+ +... .....++|++++|.||+|++|+++++|+|+++|+.++..+ .
T Consensus 250 DHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~--------~ 321 (1080)
T KOG0437 250 DHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACN--------E 321 (1080)
T ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCHHHCCCCCCCEEEEEEHHCCCCCCCCCCCEEECCCCCEEEEEECC--------C
T ss_conf 44312388878634789999841463333155333203654101277533576423886885377688337--------7
Q ss_pred CCEEEECCCHHHHHHHHC----CCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 743551211188888760----9851784100111112857543137866512551144322332244540564057898
Q gi|254780445|r 277 GKKLIISKNLAQSIANQT----NVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGV 352 (963)
Q Consensus 277 ~~~~i~a~~~~~~~~~~~----~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~ 352 (963)
.+.+|..+..+..++.+. ...+..+.++.|.+|+|.....|++.....+.+|++. |.++.|||+|.++|+..|
T Consensus 322 ~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlT---i~~~KGTGvVtsVpsdsP 398 (1080)
T KOG0437 322 TEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLT---ILATKGTGVVTSVPSDSP 398 (1080)
T ss_pred CEEEEEEHHHHHHCCHHHCCCCCCCCCCEEEECCHHHCCCCCCCCCHHHHEEEECCCEE---EECCCCCEEEEECCCCCC
T ss_conf 42788606877520034314557865511443343221774468500211014223002---550577504784789980
Q ss_pred HHHHHHHHCCCHHHHHCCCEE------------------------------EEECCCC------------CCCCC--CCC
Q ss_conf 898998760521221002203------------------------------4302344------------55102--431
Q gi|254780445|r 353 EDFTAWNEAKDILLNRSVDIK------------------------------VPSPVDG------------RGFYT--TEA 388 (963)
Q Consensus 353 ~Dy~~~~~~~~~~~~~~~~l~------------------------------~~~~vd~------------~G~~~--~~~ 388 (963)
|||.++.++....-- ||+. +-++-|. +|.+. .-+
T Consensus 399 DDf~al~dL~kK~~l--Yg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~mli 476 (1080)
T KOG0437 399 DDFAALQDLKKKPEL--YGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLI 476 (1080)
T ss_pred HHHHHHHHHHHCCCC--CCCCHHHCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 256777766415200--377802302445203523663316699999987305811678888766788987640362897
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 00178632113554445675452356647982100000012211321013203333102366302245542368999987
Q gi|254780445|r 389 PGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALS 468 (963)
Q Consensus 389 ~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~ 468 (963)
+.|.|..|- ++.++|-.+|.+.|.++....-+- +.-.||+..+|+-++|||||+ |+...||.++.+
T Consensus 477 g~y~G~KVe-------~~K~~i~~~li~~g~a~~y~EPEk--qVmSRSGdeCiVAL~DQWYld-----YgE~eWKk~a~~ 542 (1080)
T KOG0437 477 GKYKGEKVE-------DAKPKIKTDLIETGDALKYNEPEK--QVMSRSGDECIVALCDQWYLD-----YGEAEWKKQAKE 542 (1080)
T ss_pred ECCCCCCHH-------HHHHHHHHHHHHCCCCEEECCCCH--HHHCCCCCCEEEEECCCHHHH-----CCCHHHHHHHHH
T ss_conf 144650077-------654678988885033256337502--331357882599941302212-----472989999999
Q ss_pred HHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEE---EEC---CCCCEEECCCHHHHHHHHHHHCCCCCCC---
Q ss_conf 5200000244434320244304320000112345672258---982---5884732521124442122211887433---
Q gi|254780445|r 469 EVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICF---FYN---EKGEILLDKAINDRIIKTFKDQGSDAWF--- 539 (963)
Q Consensus 469 ~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi---~~~---e~~~~~~~~~~~~~i~~~~~~~g~d~~~--- 539 (963)
++++++-+.+..|+-|+.-|.++..|.+||..+.||.||| |.. .|+++++..+++.|+... .-+|...-.
T Consensus 543 cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~-d~~g~~~~plgi 621 (1080)
T KOG0437 543 CLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHR-DLYGKVEGPLGI 621 (1080)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH-HHCCCCCCCCCC
T ss_conf 9865530697888778888899875101201167777887678887760312899999999999877-640677665778
Q ss_pred --CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CC
Q ss_conf --56401114688788755456642100003335454332222233344310025544421112455444331178--40
Q gi|254780445|r 540 --SEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRG--ST 615 (963)
Q Consensus 540 --~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~--~~ 615 (963)
+.-..+.+..-.++.++.+.+++-+- -..-++++|++|||.|++++|+|.+-.-.--.|..++|++. ++
T Consensus 622 ~~~QMtdeVwdYvF~~~~~~k~t~i~~e-------~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~W 694 (1080)
T KOG0437 622 KPDQMTDEVWDYVFLNEPYPKNTAIPEE-------ALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKW 694 (1080)
T ss_pred CHHHCCHHHHHHHHCCCCCCCCCCCCHH-------HHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEHHHHCCCCCC
T ss_conf 9465478988786506998767784099-------999999763100301344234213523136755400231540028
Q ss_pred EEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 0001303782621345300001234433366411367578878887-178766554431025677764000001100000
Q gi|254780445|r 616 PFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV-NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWML 694 (963)
Q Consensus 616 Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~-~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l 694 (963)
| |.+.+||+.+ -|++|||||.||+....+.|++||||++|+-+| ++|..+|.+|.+..... +..+|.+-..++.
T Consensus 695 P-kgiraNGHLm-LNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnA---aILRLyt~~ew~e 769 (1080)
T KOG0437 695 P-KGIRANGHLM-LNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANA---AILRLYTYVEWIE 769 (1080)
T ss_pred C-CCCCCCCEEE-ECCHHCCCCCCCEEEHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCH---HHHHHHHHHHHHH
T ss_conf 6-5311176677-331220545677245999898738752045320226874343066650237---9999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCHHHCCCHHHCCCCCCCHH
Q ss_conf 1224444567310111278887543689999998898765401226688-998786302400101020122278998089
Q gi|254780445|r 695 GMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQ-LTNFSNAELSSFYFDIRKDSLYCDSPSSLK 773 (963)
Q Consensus 695 ~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~-i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~ 773 (963)
..+.+.+.-.....+ ...|+-+.+.+|.++...+++|+...|..|++. +++|... -++| |.-|....
T Consensus 770 Em~~~~s~LrtGp~~-~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaA--rD~Y------rel~g~~m--- 837 (1080)
T KOG0437 770 EMCENRSSLRTGPAS-TFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAA--RDMY------RELCGEGM--- 837 (1080)
T ss_pred HHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH------HHHHCCCC---
T ss_conf 997437765248627-77899999899999999999988867999998505889988--9999------99704553---
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCH
Q ss_conf 999999999999999999700044899999986388677345335889983
Q gi|254780445|r 774 RLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPL 824 (963)
Q Consensus 774 R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~~~wP~~~~ 824 (963)
....+...+++...||+||+||+||.||+.+.++..||+. .||....
T Consensus 838 ---h~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~v~~-~wP~~s~ 884 (1080)
T KOG0437 838 ---HRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKNFSVNV-GWPFVSP 884 (1080)
T ss_pred ---CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEC-CCCCCCC
T ss_conf ---1899999999999987412527999999996168855426-8997897
No 21
>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=700.84 Aligned_cols=355 Identities=30% Similarity=0.486 Sum_probs=312.6
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 84899628225588976215778566878998767089826788882444208999999987655998334899999999
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQA 133 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~ 133 (963)
++|++.+|||||||+|||||+++++++||++||+||+|++|+|++|||+||||||++|+|+.+..++...++++++|++.
T Consensus 1 k~f~itTpipYaNG~~HiGHa~~~i~aDv~aRy~rm~G~~V~f~~G~DeHGlpie~~~ek~~~~~~~~~~~~~~~~f~~~ 80 (363)
T cd00817 1 EPFVIDTPPPNVTGSLHIGHALTNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (363)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHH
T ss_conf 98599489998888613527898999999999998169977887845756689999999983605665000798999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEE
Q ss_conf 99999999999999999706077636981157767989999999999987961103430220574357365002101321
Q gi|254780445|r 134 CRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDV 213 (963)
Q Consensus 134 c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~ 213 (963)
|++++.++.+.++++|++||+++||++.+.|++|++.++++++|.+|+++|+||++.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~lg~~~D~~~~~rT~d~~h~~~vq~~f~~l~~~G~iY~~~~~v~~------------------ 142 (363)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSKAVQEAFVRLYEKGLIYRANRLVNW------------------ 142 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEECC------------------
T ss_conf 99999999999999999833011657503437767999999999999988897636824573------------------
Q ss_pred ECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 05779998330375311220011000000578865445322776745899830665311112374355121118888876
Q gi|254780445|r 214 DSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQ 293 (963)
Q Consensus 214 ~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~ 293 (963)
T Consensus 143 -------------------------------------------------------------------------------- 142 (363)
T cd00817 143 -------------------------------------------------------------------------------- 142 (363)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEE
Q ss_conf 09851784100111112857543137866512551144322332244540564057898898998760521221002203
Q gi|254780445|r 294 TNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIK 373 (963)
Q Consensus 294 ~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~ 373 (963)
T Consensus 143 -------------------------------------------------------------------------------- 142 (363)
T cd00817 143 -------------------------------------------------------------------------------- 142 (363)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf 43023445510243100178632113554445675452356647982100000012211321013203333102366302
Q gi|254780445|r 374 VPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMD 453 (963)
Q Consensus 374 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d 453 (963)
||++..++|||+++.
T Consensus 143 -----------------------------------------------------------------~ve~~~~~~~f~~~~ 157 (363)
T cd00817 143 -----------------------------------------------------------------VIEPLLKPQWFVKVK 157 (363)
T ss_pred -----------------------------------------------------------------EEEEEECCEEEEECH
T ss_conf -----------------------------------------------------------------779987761689877
Q ss_pred CCCCCCHHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHH
Q ss_conf 2455423689999875200--00024443432024430432000011234567225898258847325211244421222
Q gi|254780445|r 454 KKLGDGSTLRSRALSEVEK--IRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFK 531 (963)
Q Consensus 454 ~~~~~~~~~k~~~l~~i~~--v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~ 531 (963)
.+++++++.+++ ++|.|+..++++.+||++++||||||||+||+|||+|+|+++...+........
T Consensus 158 -------~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WG~piP~~~~~~~~~~~~~~~~~~~----- 225 (363)
T cd00817 158 -------DLAKAALEAVKEGDIKFVPERMEKRYEDWLENIRDWCISRQLWWGHRIPAWYCEDCGHWVVAREEEEA----- 225 (363)
T ss_pred -------HHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCEEECCCCCCEEECCCHHHH-----
T ss_conf -------88999999996299778578999999999851576533100013666661462789847706733641-----
Q ss_pred HCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 11887433564011146887887554566421000033354543322-----2223334431002554442111245544
Q gi|254780445|r 532 DQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSLL 606 (963)
Q Consensus 532 ~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~-----~~~~~~~PaD~~~eG~Dq~RgWF~s~ll 606 (963)
. ........+.+++..+.+++|||||||||+++++...+ ..++.+||+|++++|+||+|||++++++
T Consensus 226 ---~-----~~~~~~~~~~~~~~~~~~~~dv~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDIirfW~~~~~~ 297 (363)
T cd00817 226 ---V-----DPAIPEACCPCGSEELEQDTDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLPTGHDIIFFWVARMIM 297 (363)
T ss_pred ---H-----HHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCHHHHCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf ---1-----12432047888721130367765304452477225508974331454078763787623887469999999
Q ss_pred HHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCC
Q ss_conf 43311784000013037826213453000012344333664113675788788871-787665544
Q gi|254780445|r 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRL 671 (963)
Q Consensus 607 ~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~ 671 (963)
.+..+.++.||++|++||||++.+|+|||||+||||+|.+++++||+|+||||+++ +++++|.++
T Consensus 298 ~~~~l~~~~P~~~v~~HG~vl~~~G~KMSKS~GNvv~p~~~l~~yg~D~lRy~l~~~~~~~~D~~~ 363 (363)
T cd00817 298 RGLELTGKLPFKEVYIHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAASQGRDINL 363 (363)
T ss_pred HHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 876624898865668786289999887578899866989999877927999999952998777898
No 22
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=690.33 Aligned_cols=494 Identities=24% Similarity=0.369 Sum_probs=365.4
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 848996282255889762157785668-7899876708982678888244420899999998765599833489999999
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILK-DVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQ 132 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~k-Di~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~ 132 (963)
.+|++-.++|||||.|||||+++.+++ ||++||+||+|++|+|++|||+||+|||.+|+|+ | +++.
T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~----g-----~~p~---- 69 (558)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKE----G-----VSPQ---- 69 (558)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC----C-----CCHH----
T ss_conf 51898479988889855231114198999999999837998797584064749999999985----9-----9999----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE
Q ss_conf 99999999999999999970607763698115776798999999999998796110343022057435736500210132
Q gi|254780445|r 133 ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD 212 (963)
Q Consensus 133 ~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d 212 (963)
+++.++.+.++++|++||+++|| .+.|++|.+.+.++++|.+|+++|+||++..+++|||.|+|.|+|..|+.
T Consensus 70 ---e~~~~~~~~~~~~~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~G-- 142 (558)
T PRK12268 70 ---ELADKYHEEHKEDFEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYVEG-- 142 (558)
T ss_pred ---HHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCC--
T ss_conf ---99999999999999981983776--86689889999999999999988993301353436841123131233154--
Q ss_pred EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHH
Q ss_conf 10577999833037531122001100000057886544532277674589983066531111237435512111888887
Q gi|254780445|r 213 VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIAN 292 (963)
Q Consensus 213 ~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~ 292 (963)
|.|
T Consensus 143 ----------------------------~cP------------------------------------------------- 145 (558)
T PRK12268 143 ----------------------------TCP------------------------------------------------- 145 (558)
T ss_pred ----------------------------CCC-------------------------------------------------
T ss_conf ----------------------------067-------------------------------------------------
Q ss_pred HCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE
Q ss_conf 60985178410011111285754313786651255114432233224454056405789889899876052122100220
Q gi|254780445|r 293 QTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI 372 (963)
Q Consensus 293 ~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l 372 (963)
.+|.+|-. ++ .+
T Consensus 146 --------------------------------------------------------~c~~~~~~-----Gd--~c----- 157 (558)
T PRK12268 146 --------------------------------------------------------YCGYEKAR-----GD--QC----- 157 (558)
T ss_pred --------------------------------------------------------CCCCCCCC-----CC--HH-----
T ss_conf --------------------------------------------------------76874356-----73--25-----
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 34302344551024310017863211355444567545235664798210000001221132101320333310236630
Q gi|254780445|r 373 KVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHM 452 (963)
Q Consensus 373 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~ 452 (963)
+. .|.. ++ +.+ | + .|+|+||++|+++|.++|||+++
T Consensus 158 ------e~-----------cg~~-~~-------~~d-----l------i--------~p~~~~~g~~~e~~~~~~~f~~l 193 (558)
T PRK12268 158 ------DN-----------CGAL-LD-------PTD-----L------I--------NPRSKISGSTPEFRETEHFFLDL 193 (558)
T ss_pred ------HH-----------CCCC-CC-------HHH-----H------C--------CCCCCCCCCCCEEEECCCEEECC
T ss_conf ------32-----------4764-78-------577-----2------4--------88567789944477345302141
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHH
Q ss_conf 224554236899998752000002444343202443-0432000011234567225898258847325211244421222
Q gi|254780445|r 453 DKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMI-ENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFK 531 (963)
Q Consensus 453 d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i-~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~ 531 (963)
++ +++.+++.+++..++|+..++++.+|| ++++|||||||++||+|||++..++...+
T Consensus 194 ~~-------~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~D~~ISR~~~WGipiP~~~~~~~~iy-------------- 252 (558)
T PRK12268 194 PA-------FQEALRKWIESGTDWPPNVLNFTLNWLKEGLKPRAITRDLPWGIPIPFEGAEGKVFY-------------- 252 (558)
T ss_pred HH-------HHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCEEE--------------
T ss_conf 87-------789999998538877889999999998633756545553878657885556896798--------------
Q ss_pred HCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHHH-
Q ss_conf 118874335640111468878875545664210000333545433222223334431----002554442111245544-
Q gi|254780445|r 532 DQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPAD----VYLEGSDQHRGWFQHSLL- 606 (963)
Q Consensus 532 ~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~~~~~~~~PaD----~~~eG~Dq~RgWF~s~ll- 606 (963)
+||+.+... +. +...+......- ..+..+||.+ +++.|+|+++ ||+.+.
T Consensus 253 -----VW~Da~~~y-is---~~~~~~~~~~~~---------------~~~~~~W~~~~~~~~~f~GkDii~--FH~v~wp 306 (558)
T PRK12268 253 -----VWFDAPIGY-IS---ATKEWAKRKGDP---------------EAWKEFWLDSDTKYYYFIGKDNIP--FHSVIWP 306 (558)
T ss_pred -----EECCCCCCH-HH---HHHHHHHCCCCH---------------HHHHHHCCCCCCEEEEECCCCCCH--HHHHHHH
T ss_conf -----865787220-34---336545416985---------------679872789984277643666543--4787999
Q ss_pred ---HHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHHHHH--H
Q ss_conf ---43311784000013037826213453000012344333664113675788788871-78766554431025677--7
Q gi|254780445|r 607 ---ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNIIQTN--I 680 (963)
Q Consensus 607 ---~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l~~~--~ 680 (963)
++.....+.| +.+++|||++. +|+|||||+||+|+|.+++++||||++|||+++ ++.++|.+||.+.+... .
T Consensus 307 a~l~a~~~~~~lP-~~i~~~g~~~~-~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~ 384 (558)
T PRK12268 307 AMLLGSGEPYKLP-TAIVSSEYLTY-EGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNS 384 (558)
T ss_pred HHHHHCCCCCCCC-CEEEEEEEEEE-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9997337987788-77877556874-684114557887798999987490777899885488888888799999999999
Q ss_pred HHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 6400000110000012-244445673101112788875436899999988987654012266889987863024001010
Q gi|254780445|r 681 DTYRKLRNTIRWMLGM-LAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDI 759 (963)
Q Consensus 681 ~~~~kl~Nt~rf~l~~-l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~ 759 (963)
+..++++|.+...++. ...+++..+....+...|+|+++++++++++++++|++|+|++|++.|++|+ .++|.|++.
T Consensus 385 dL~~~~gNl~~R~~~~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~--~~~N~y~~~ 462 (558)
T PRK12268 385 ELADKYGNLVNRVLSFIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELA--RLANKYLNE 462 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 999999999999999999865897898767985659999999999999999997517999999999999--999999983
Q ss_pred CCHHHCCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 20122278998089-999999999999999999700044899999986388
Q gi|254780445|r 760 RKDSLYCDSPSSLK-RLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNP 809 (963)
Q Consensus 760 ~Kdrly~~~~~s~~-R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~ 809 (963)
.++ |...+++.. ..++..++.++++.++.||+||||++||+||..|+-
T Consensus 463 ~~P--W~l~k~d~~~~~~vl~~~l~~lr~~~ilL~P~mP~~se~i~~~Lg~ 511 (558)
T PRK12268 463 KAP--WKLAKTDPERAAAVLYTALNLVKLLAILLYPFLPFSAEKIWEMLGL 511 (558)
T ss_pred CCC--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
T ss_conf 798--5431689999999999999999999999867403999999998499
No 23
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=680.34 Aligned_cols=331 Identities=47% Similarity=0.822 Sum_probs=302.6
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCH-HHCCHHHHHH
Q ss_conf 848996282255889762157785668789987670898267888824442089999999876559983-3489999999
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKK-DDIPVNEFRQ 132 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~-~~~~~~~~~~ 132 (963)
|+|+|.+|||||||.|||||++++++.||++||+||+|++|+|++|+||||+|||++|+|+++...+.. .++++++|++
T Consensus 1 p~~~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH
T ss_conf 95599589988578734558899999999999998069988778851440399999999964898730476559999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE
Q ss_conf 99999999999999999970607763698115776798999999999998796110343022057435736500210132
Q gi|254780445|r 133 ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD 212 (963)
Q Consensus 133 ~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d 212 (963)
.|++++.++.+.++++|+|+|++.||++.|.|++++|.+.++++|.+|+++|+||+|.+|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~----------------- 143 (339)
T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPW----------------- 143 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECC-----------------
T ss_conf 999999999999999999837351477771216889999999999999988886267605368-----------------
Q ss_pred EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHH
Q ss_conf 10577999833037531122001100000057886544532277674589983066531111237435512111888887
Q gi|254780445|r 213 VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIAN 292 (963)
Q Consensus 213 ~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~ 292 (963)
T Consensus 144 -------------------------------------------------------------------------------- 143 (339)
T cd00818 144 -------------------------------------------------------------------------------- 143 (339)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE
Q ss_conf 60985178410011111285754313786651255114432233224454056405789889899876052122100220
Q gi|254780445|r 293 QTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI 372 (963)
Q Consensus 293 ~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l 372 (963)
T Consensus 144 -------------------------------------------------------------------------------- 143 (339)
T cd00818 144 -------------------------------------------------------------------------------- 143 (339)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 34302344551024310017863211355444567545235664798210000001221132101320333310236630
Q gi|254780445|r 373 KVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHM 452 (963)
Q Consensus 373 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~ 452 (963)
|+++|.++|||++|
T Consensus 144 ------------------------------------------------------------------p~~~~~~~~~F~~l 157 (339)
T cd00818 144 ------------------------------------------------------------------PLIYRATPQWFIRV 157 (339)
T ss_pred ------------------------------------------------------------------CCCCEECCCEEEEC
T ss_conf ------------------------------------------------------------------76005815679986
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHH
Q ss_conf 22455423689999875200000244434-32024430432000011234567225898258847325211244421222
Q gi|254780445|r 453 DKKLGDGSTLRSRALSEVEKIRFFPSSGK-NRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFK 531 (963)
Q Consensus 453 d~~~~~~~~~k~~~l~~i~~v~~~P~~~k-~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~ 531 (963)
.+ +++++++.+++++|+|+..+ .++.+|+++++||||||||+||+|||+|+|++++.+
T Consensus 158 ~~-------~~~~ll~~~~~~~~~p~~~~~~~l~~~~~~l~Dw~ISR~~~WGipvP~w~~~~~~~~-------------- 216 (339)
T cd00818 158 EK-------LKDRLLEANDKVNWIPEWVKEGRFGNWLENRRDWCISRQRYWGTPIPVWYSEDCGEV-------------- 216 (339)
T ss_pred HH-------HHHHHHHHHHCCCEECCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEECCCCCCC--------------
T ss_conf 89-------999999877538737861066499999716856504402666753463564899832--------------
Q ss_pred HCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 11887433564011146887887554566421000033354543322-----2223334431002554442111245544
Q gi|254780445|r 532 DQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSLL 606 (963)
Q Consensus 532 ~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~-----~~~~~~~PaD~~~eG~Dq~RgWF~s~ll 606 (963)
.+.|++|||||||||+++++...+ .++..+||+|++++|+||+|+||+++++
T Consensus 217 -----------------------~~~~~~dv~yVWfDa~~~~~~~~~~~~~~~~~~~~~p~~~~~~GkDi~~~~f~~~~~ 273 (339)
T cd00818 217 -----------------------LVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLLL 273 (339)
T ss_pred -----------------------CCCCCCCHHHHHHHCCCCHHHHCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf -----------------------100365017777635624898728986431341387660566063312337999999
Q ss_pred HHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCC
Q ss_conf 43311784000013037826213453000012344333664113675788788871-787665544
Q gi|254780445|r 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRL 671 (963)
Q Consensus 607 ~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~ 671 (963)
.++++.+..|||+|++|||+++++|+|||||+||+|+|.+++++||||++|||+++ +++++|.+|
T Consensus 274 ~~~~~~~~~P~~~v~~hg~~l~~~G~KMSKS~GnvI~p~~~l~~y~~D~lRyyl~~~~~~~~D~~F 339 (339)
T cd00818 274 LSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNVVDPQEVIDKYGADALRLWVASSDVYAEDLRF 339 (339)
T ss_pred HHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 878854899852148898499999866278899878989999876947999999916888889999
No 24
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=647.59 Aligned_cols=461 Identities=24% Similarity=0.386 Sum_probs=364.6
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 84899628225588976215778566878998767089826788882444208999999987655998334899999999
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQA 133 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~ 133 (963)
++|++-.+||||||+||||||+++++.||++||+||+|++|+|++|||+||+|||.+|+++ | +++.
T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~~~----g-----~~p~----- 66 (512)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAEEA----G-----ISPQ----- 66 (512)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC----C-----CCHH-----
T ss_conf 9789968999889973446358799999999999955997074687177519999999985----9-----9999-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEE
Q ss_conf 99999999999999999706077636981157767989999999999987961103430220574357365002101321
Q gi|254780445|r 134 CRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDV 213 (963)
Q Consensus 134 c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~ 213 (963)
+++.++.+.++++++++|+++| +-+.|++|.+.+.++++|.+|+++|+||++..+++|||.|++-+.+.++.
T Consensus 67 --e~~~~~~~~~~~~~~~l~i~~D--~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~---- 138 (512)
T PRK11893 67 --ELADRNSASFKRLWEALNISYD--DFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEAR---- 138 (512)
T ss_pred --HHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHC----
T ss_conf --9999999999999998099888--78779987999999999999976797743244432268864445777723----
Q ss_pred ECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 05779998330375311220011000000578865445322776745899830665311112374355121118888876
Q gi|254780445|r 214 DSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQ 293 (963)
Q Consensus 214 ~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~ 293 (963)
T Consensus 139 -------------------------------------------------------------------------------- 138 (512)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (512)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEE
Q ss_conf 09851784100111112857543137866512551144322332244540564057898898998760521221002203
Q gi|254780445|r 294 TNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIK 373 (963)
Q Consensus 294 ~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~ 373 (963)
|.
T Consensus 139 ------------~~------------------------------------------------------------------ 140 (512)
T PRK11893 139 ------------LG------------------------------------------------------------------ 140 (512)
T ss_pred ------------CC------------------------------------------------------------------
T ss_conf ------------66------------------------------------------------------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf 43023445510243100178632113554445675452356647982100000012211321013203333102366302
Q gi|254780445|r 374 VPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMD 453 (963)
Q Consensus 374 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d 453 (963)
. . . -|+|.+|++|++.+.++|||+++.
T Consensus 141 ------~----------~--------------~-----------------------~~~~~~~g~~~e~~~~~~~flkl~ 167 (512)
T PRK11893 141 ------E----------D--------------G-----------------------CPRCPIHGKPVEWVEEESYFFRLS 167 (512)
T ss_pred ------C----------C--------------C-----------------------CCCCCCCCCCCEEEECCCCEECCH
T ss_conf ------5----------7--------------8-----------------------865555799776872476112050
Q ss_pred CCCCCCHHHHHHHHHHHHCC--CCCCCCCCCCHHHHHHC-CCCCCCCCCC-CCCCCEEEEECCCCCEEECCCHHHHHHHH
Q ss_conf 24554236899998752000--00244434320244304-3200001123-45672258982588473252112444212
Q gi|254780445|r 454 KKLGDGSTLRSRALSEVEKI--RFFPSSGKNRLRSMIEN-RPDWLLSRQR-NWGVPICFFYNEKGEILLDKAINDRIIKT 529 (963)
Q Consensus 454 ~~~~~~~~~k~~~l~~i~~v--~~~P~~~k~r~~~~i~~-~~DW~ISRqR-~WG~PIPi~~~e~~~~~~~~~~~~~i~~~ 529 (963)
+ +++++++.+++. .+.|+..++.+.+|+++ ++|||||||+ .||+|+|. +
T Consensus 168 ~-------~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~----~---------------- 220 (512)
T PRK11893 168 K-------YQDKLLELYEANPDFIQPESRRNEVINFVKSGLKDLSISRTNFDWGIPVPG----D---------------- 220 (512)
T ss_pred H-------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC----C----------------
T ss_conf 5-------467799997249865186999999999985778766152567878998888----8----------------
Q ss_pred HHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 221188743356401114688788755456642100003335454332-------2222333443100255444211124
Q gi|254780445|r 530 FKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL-------GKDPKLAWPADVYLEGSDQHRGWFQ 602 (963)
Q Consensus 530 ~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~-------~~~~~~~~PaD~~~eG~Dq~RgWF~ 602 (963)
+..|++|||||........ ...++.+||.|+++.|+|+.+ ||
T Consensus 221 -----------------------------~~~~~yvWfda~~~y~s~~~~~~~~~~~~~~~~w~~~vh~~G~Dii~--fH 269 (512)
T PRK11893 221 -----------------------------PKHVIYVWFDALLNYLTALGYDEPDLEELFRKYWPADVHLIGKDILR--FH 269 (512)
T ss_pred -----------------------------CCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCCC--HH
T ss_conf -----------------------------88620112531355677645887656478984487504323665120--13
Q ss_pred HHHHHHH--HCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHHHHH
Q ss_conf 5544433--11784000013037826213453000012344333664113675788788871-78766554431025677
Q gi|254780445|r 603 HSLLESC--ATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNIIQTN 679 (963)
Q Consensus 603 s~ll~~~--~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l~~~ 679 (963)
+....+. +.....| +++++|||+.. +|+|||||+||+|+|.+++++||+|++|||+++ ++.++|.+|+.+.+...
T Consensus 270 ~~~~~a~l~~~~~~~p-~~~~~hg~l~~-~G~KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~~Fs~~~f~~~ 347 (512)
T PRK11893 270 AVYWPAFLMAAGLPLP-KRVFAHGFLTN-DGQKMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDGDFSEEAFINR 347 (512)
T ss_pred HHHHHHHHHHCCCCCC-CCCCCCEEEEE-CCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 8889999986699988-63431114887-571501347875899999998595040287763288777878789999989
Q ss_pred HH--HHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 76--40000011000001224-4445673101112788875436899999988987654012266889987863024001
Q gi|254780445|r 680 ID--TYRKLRNTIRWMLGMLA-HDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFY 756 (963)
Q Consensus 680 ~~--~~~kl~Nt~rf~l~~l~-~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Y 756 (963)
.+ +.++++|.+...++.+. .+++..+....+...|+|++.++++++.+++++|++|+|++|++.+++|++ .+|.|
T Consensus 348 ~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a~~~i~~~~~--~~N~y 425 (512)
T PRK11893 348 INADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLEKADAALEQVREAMDNFAFHKALEAILELAA--EANKY 425 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf 7589999999999999999987517878886658876899999999999999999971259999999999999--99999
Q ss_pred HHCCCH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 010201-2227899808999999999999999999970004489999998638867
Q gi|254780445|r 757 FDIRKD-SLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEA 811 (963)
Q Consensus 757 ld~~Kd-rly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~ 811 (963)
++..|+ +++. .+.....++..++..+++.+++||+|||||+||++|+.|+-++
T Consensus 426 ~~~~~PW~l~k--~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~ 479 (512)
T PRK11893 426 IDEQAPWSLAK--TDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEE 479 (512)
T ss_pred HHHCCCHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 88478753315--8999999999999999999999985843599999999849998
No 25
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=607.96 Aligned_cols=478 Identities=26% Similarity=0.377 Sum_probs=353.7
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHH
Q ss_conf 84899628225588976215778566878998767089826788882444208999999987655998334899999999
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQA 133 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~ 133 (963)
++|.+-.++|||||.|||||++++++.||++||+||+|++|+|+.|||+||+|||.+|+++ | +++.
T Consensus 2 k~~~iTt~ipY~Ng~~HiGH~~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~~i~~~A~~~----g-----~tp~----- 67 (666)
T PRK00133 2 RKILVTCALPYANGPIHLGHLLEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE----G-----ITPE----- 67 (666)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC----C-----CCHH-----
T ss_conf 8779817987888984312467699999999999836995498474278848999999985----9-----9999-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEE
Q ss_conf 99999999999999999706077636981157767989999999999987961103430220574357365002101321
Q gi|254780445|r 134 CRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDV 213 (963)
Q Consensus 134 c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~ 213 (963)
+++.++.+.++++|++||+++| +-+.|++|++.+.++++|.+|+++|+||++..+++|||.|++.|+|..|+ .
T Consensus 68 --e~~d~~~~~~~~~~~~l~Is~D--~f~rTt~~~h~~~vq~~f~~l~~~G~iy~~~~~~~Yc~~~e~fl~Dr~V~---G 140 (666)
T PRK00133 68 --ELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYERTIEQLYDPEKGMFLPDRFVK---G 140 (666)
T ss_pred --HHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEEE---E
T ss_conf --9999999999999998399578--78578988999999999999997899897403555668756552542342---0
Q ss_pred ECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 05779998330375311220011000000578865445322776745899830665311112374355121118888876
Q gi|254780445|r 214 DSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQ 293 (963)
Q Consensus 214 ~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~ 293 (963)
T Consensus 141 -------------------------------------------------------------------------------- 140 (666)
T PRK00133 141 -------------------------------------------------------------------------------- 140 (666)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEE
Q ss_conf 09851784100111112857543137866512551144322332244540564057898898998760521221002203
Q gi|254780445|r 294 TNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIK 373 (963)
Q Consensus 294 ~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~ 373 (963)
++|.+|.+|-. ++.
T Consensus 141 ----------------------------------------------------tCP~C~~~~~~-----GD~--------- 154 (666)
T PRK00133 141 ----------------------------------------------------TCPKCGAEDQY-----GDN--------- 154 (666)
T ss_pred ----------------------------------------------------ECCCCCCHHHC-----CCC---------
T ss_conf ----------------------------------------------------25777871204-----874---------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEC
Q ss_conf 43023445510243100178632113554445675452356647982100000012211321013203333102366302
Q gi|254780445|r 374 VPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMD 453 (963)
Q Consensus 374 ~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d 453 (963)
| +. .|... + +. .|. =|+|++|++|+++|.+.|||+++.
T Consensus 155 --C---------e~----cG~~~-~-------p~-----eL~--------------~p~~~~~g~~~e~~~~e~~ff~Ls 192 (666)
T PRK00133 155 --C---------EV----CGATY-S-------PT-----ELI--------------NPKSAISGATPVLKESEHFFFKLP 192 (666)
T ss_pred --C---------CC----CCCCC-C-------CH-----HHC--------------CCCCCCCCCCCEEECCCCHHHHHH
T ss_conf --2---------24----56516-7-------34-----423--------------864345798516603533331387
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH-CCCCCCCCCCCCC-CCCEEEEECCCCCEEECCCHHHHHHHHHH
Q ss_conf 245542368999987520000024443432024430-4320000112345-67225898258847325211244421222
Q gi|254780445|r 454 KKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIE-NRPDWLLSRQRNW-GVPICFFYNEKGEILLDKAINDRIIKTFK 531 (963)
Q Consensus 454 ~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~-~~~DW~ISRqR~W-G~PIPi~~~e~~~~~~~~~~~~~i~~~~~ 531 (963)
+ +++++++.+++-.| |...++.+.+||+ +++|||||||..| |+|||. +++
T Consensus 193 ~-------~~~~L~~~~~~~~~-~~~~~n~~~~~l~~gL~D~~ISR~~~W~GipvP~---~~~----------------- 244 (666)
T PRK00133 193 D-------FEEFLKEWTRSGAL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPG---APG----------------- 244 (666)
T ss_pred H-------HHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCC---CCC-----------------
T ss_conf 7-------77899875104889-8789999999985788775304027844458889---876-----------------
Q ss_pred HCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCC-----CCCCCCCCCCH
Q ss_conf 118874335640111468878875545664210000333545-------433222223334431-----00255444211
Q gi|254780445|r 532 DQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTH-------TILLGKDPKLAWPAD-----VYLEGSDQHRG 599 (963)
Q Consensus 532 ~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~-------~~~~~~~~~~~~PaD-----~~~eG~Dq~Rg 599 (963)
-|+.||||+-+.+ ..-.+.+++.+||+| +++.|+|+.|
T Consensus 245 -----------------------------kv~YVW~DA~igYis~t~~~~~~~~~~~~~~W~~d~~~~~vhfiGKDii~- 294 (666)
T PRK00133 245 -----------------------------KVFYVWLDAPIGYISSTKNLCDKRGLDWDEYWKKDSDTELYHFIGKDIIY- 294 (666)
T ss_pred -----------------------------EEEEEEECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEECCCCHHH-
T ss_conf -----------------------------48999615645377764433143565587638899876336753443114-
Q ss_pred HHHHHHHHHHHCC-C-CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCC-CCCCCCCHH
Q ss_conf 1245544433117-8-4000013037826213453000012344333664113675788788871-7876-655443102
Q gi|254780445|r 600 WFQHSLLESCATR-G-STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYH-DDQRLGKNI 675 (963)
Q Consensus 600 WF~s~ll~~~~~~-~-~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~-~d~~~~~~~ 675 (963)
||+.++.++.+. | ..| ++|++|||+. .+|+|||||+||+|+|.+++++||+|++|||+++ .+.+ +|.+||.+.
T Consensus 295 -FH~i~wPa~L~~~g~~lP-~~v~~hg~l~-~~G~KmSKS~Gnvv~p~~~l~~yg~D~lRY~l~~~~p~~~~D~dfs~~~ 371 (666)
T PRK00133 295 -FHTLFWPAMLEGAGYRLP-TNVFAHGFLT-VEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPSRIDDIDFNWED 371 (666)
T ss_pred -HHHHHHHHHHHHCCCCCC-CCCCCCCCEE-ECCEEEECCCCEEEEHHHHHHHCCCCCEEHHHHHCCCCCCCCCCCCHHH
T ss_conf -647679999984677888-6121146487-7880600126717617999986696453020331078987677869999
Q ss_pred HHHHH--HHHHHHCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56777--640000011000001224-444567310111278887543689999998898765401226688998786302
Q gi|254780445|r 676 IQTNI--DTYRKLRNTIRWMLGMLA-HDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAEL 752 (963)
Q Consensus 676 l~~~~--~~~~kl~Nt~rf~l~~l~-~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dL 752 (963)
+.... +..+.|-|.+.-.++.+. .+++..+. ...|+-++..+.++.+++.++|++++|++|++.++.++. .
T Consensus 372 ~~~r~NsdLan~lGNl~~R~~~~~~k~~~g~vp~----~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~--~ 445 (666)
T PRK00133 372 FQQRVNSDLVGKLVNFASRAAGFINKRFDGKLPD----ELADPELLEEFRAAAESIAEAYEAREFRKALREIMALAD--R 445 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--H
T ss_conf 9999868888766689999999999865997899----745899999999999999999981069999999999999--9
Q ss_pred CCCHHHCCCHHHCCCCCCCHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 4001010201222789980899999999999---99999999700044899999986388
Q gi|254780445|r 753 SSFYFDIRKDSLYCDSPSSLKRLSSIAVIRI---LCRHLIIWIAPILPFTAEEAWLSLNP 809 (963)
Q Consensus 753 S~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~---il~~l~~lLaPi~P~~aEEiw~~l~~ 809 (963)
+|-|++-.++ |.-.+++..+....++|+. +++.+..||+||||.+|++||..|+-
T Consensus 446 ~NkYi~~~~P--W~L~K~d~~~~~l~~Vl~~~le~lr~laiLL~PfmP~~a~ki~~~Lg~ 503 (666)
T PRK00133 446 ANKYVDDKEP--WKLAKQEGEDAALQEVCSVGLNLFRALAIYLKPVLPELAERAEAFLNV 503 (666)
T ss_pred HHHHHHHCCC--HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 9888774487--655368566899999999999999999997238673789999998098
No 26
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=598.31 Aligned_cols=458 Identities=25% Similarity=0.360 Sum_probs=348.5
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 88489962822558897621577856687899876708982678888244420899999998765599833489999999
Q gi|254780445|r 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQ 132 (963)
Q Consensus 53 ~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~ 132 (963)
+++|.+-.++|||||.|||||++++++.||++||+||+|++|+|+.|+|+||+|||.+|+++ | +++.
T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~----g-----~tP~---- 69 (644)
T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEA----G-----ITPQ---- 69 (644)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC----C-----CCHH----
T ss_conf 99989968998889985545348789999999999846997598487687529999999985----9-----9999----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE
Q ss_conf 99999999999999999970607763698115776798999999999998796110343022057435736500210132
Q gi|254780445|r 133 ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD 212 (963)
Q Consensus 133 ~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d 212 (963)
+++.++++.+++++++||+++| +-..|++|++.+.++++|.+|+++|+||++...++|||.|++.+++.|++.
T Consensus 70 ---e~~d~~~~~~~~~~~~l~Is~D--~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d-- 142 (644)
T PRK12267 70 ---EYVDEISAGFKDLWDKLDISYD--KFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVD-- 142 (644)
T ss_pred ---HHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCC--
T ss_conf ---9999999999999998699678--785489889999999999999988997866551232587543336244045--
Q ss_pred EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHH
Q ss_conf 10577999833037531122001100000057886544532277674589983066531111237435512111888887
Q gi|254780445|r 213 VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIAN 292 (963)
Q Consensus 213 ~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~ 292 (963)
T Consensus 143 -------------------------------------------------------------------------------- 142 (644)
T PRK12267 143 -------------------------------------------------------------------------------- 142 (644)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE
Q ss_conf 60985178410011111285754313786651255114432233224454056405789889899876052122100220
Q gi|254780445|r 293 QTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI 372 (963)
Q Consensus 293 ~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l 372 (963)
.| .
T Consensus 143 ----------------------------------------------~g-----~-------------------------- 145 (644)
T PRK12267 143 ----------------------------------------------GG-----K-------------------------- 145 (644)
T ss_pred ----------------------------------------------CC-----C--------------------------
T ss_conf ----------------------------------------------78-----6--------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 34302344551024310017863211355444567545235664798210000001221132101320333310236630
Q gi|254780445|r 373 KVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHM 452 (963)
Q Consensus 373 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~ 452 (963)
|..|++|++.+.+++||+++
T Consensus 146 ------------------------------------------------------------cp~cg~~~e~~~ee~yffkL 165 (644)
T PRK12267 146 ------------------------------------------------------------CPDSGHEVELVKEESYFFRM 165 (644)
T ss_pred ------------------------------------------------------------CCCCCCCCEEECCCCEEEEH
T ss_conf ------------------------------------------------------------87789976464056514434
Q ss_pred CCCCCCCHHHHHHHHHHHHC-CCC-CCCCCCCCH-HHHHH-CCCCCCCCCCC-CCCCCEEEEECCCCCEEECCCHHHHHH
Q ss_conf 22455423689999875200-000-244434320-24430-43200001123-456722589825884732521124442
Q gi|254780445|r 453 DKKLGDGSTLRSRALSEVEK-IRF-FPSSGKNRL-RSMIE-NRPDWLLSRQR-NWGVPICFFYNEKGEILLDKAINDRII 527 (963)
Q Consensus 453 d~~~~~~~~~k~~~l~~i~~-v~~-~P~~~k~r~-~~~i~-~~~DW~ISRqR-~WG~PIPi~~~e~~~~~~~~~~~~~i~ 527 (963)
.+ +++.+++.+++ ..| .|+..++.+ .+|++ +++|||||||+ +||+|||. +
T Consensus 166 ~~-------~~~~L~~~~~~~p~~i~p~~~~ne~~~~~l~~gL~D~~ISR~~~~WGipvP~----d-------------- 220 (644)
T PRK12267 166 SK-------YADRLLEFYEENPDFIQPESRKNEMLNNFIKPGLEDLAVSRTSFDWGIPVPS----D-------------- 220 (644)
T ss_pred HH-------HHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC----C--------------
T ss_conf 66-------7899999996099746762588799999985778554302477888885789----8--------------
Q ss_pred HHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 12221188743356401114688788755456642100003335454332------222233344310025544421112
Q gi|254780445|r 528 KTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL------GKDPKLAWPADVYLEGSDQHRGWF 601 (963)
Q Consensus 528 ~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~------~~~~~~~~PaD~~~eG~Dq~RgWF 601 (963)
+..|++||||+-+.+...+ ...+..+||+|+++.|+|++| |
T Consensus 221 -------------------------------~~~v~YVWfDA~i~Yisa~g~~~~~~~~~~~~Wp~~~h~iGkDii~--F 267 (644)
T PRK12267 221 -------------------------------PKHVVYVWIDALLNYITALGYGSDDDELFMKFWPADVHLVGKDILR--F 267 (644)
T ss_pred -------------------------------CCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHH--H
T ss_conf -------------------------------7607998422430034341386212266776373133026855323--6
Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHHHH-
Q ss_conf 4554443311-784000013037826213453000012344333664113675788788871-7876655443102567-
Q gi|254780445|r 602 QHSLLESCAT-RGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNIIQT- 678 (963)
Q Consensus 602 ~s~ll~~~~~-~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l~~- 678 (963)
|+..+.++.+ .|..++++|++|||++ .+|+|||||+||+|+|.+++++||+|++|||+++ .+.++|.+||.+.+..
T Consensus 268 H~i~wpamL~~~~~~~p~~v~~hg~~~-~~g~KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~r 346 (644)
T PRK12267 268 HAIYWPIMLMALDLPLPKHLFAHGWWL-MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEAFVER 346 (644)
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCEEE-CCCCEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 688999999976999864451044187-1786005536842237999875594043646444488787777899999999
Q ss_pred -HHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf -776400000110000012-244445673101112788875436899999988987654012266889987863024001
Q gi|254780445|r 679 -NIDTYRKLRNTIRWMLGM-LAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFY 756 (963)
Q Consensus 679 -~~~~~~kl~Nt~rf~l~~-l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Y 756 (963)
.++..+++.|.+.-.++. ...+++..++.......|+-++.++.++.+++.++|++++|++|++.+++++ +..|-|
T Consensus 347 ~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~--~~~N~Y 424 (644)
T PRK12267 347 INSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALEELWKLI--SRANKY 424 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHH
T ss_conf 889988777789999999988751886788877874569999999999999999997126999999999999--999998
Q ss_pred HHCCCHHHCCCCCCCHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 010201222789980899999999999---999999997000448999999863886
Q gi|254780445|r 757 FDIRKDSLYCDSPSSLKRLSSIAVIRI---LCRHLIIWIAPILPFTAEEAWLSLNPE 810 (963)
Q Consensus 757 ld~~Kdrly~~~~~s~~R~s~~~~L~~---il~~l~~lLaPi~P~~aEEiw~~l~~~ 810 (963)
++-.++ |.-.+++.++..++++|+. +++.+..+|+||||.+|++||+.|+-.
T Consensus 425 i~~~~P--W~L~K~~~~~~~~~~vl~~~l~~~r~l~ilL~P~mP~~a~ki~~~Lgl~ 479 (644)
T PRK12267 425 IDETAP--WVLAKDEGKKERLGAVMAHLAESLRKVAVLLSPFMPETSKKIAEQLGLE 479 (644)
T ss_pred HHHCCC--HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
T ss_conf 885788--7663686629999999999999999999970683657999999981999
No 27
>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=0 Score=569.62 Aligned_cols=324 Identities=38% Similarity=0.631 Sum_probs=287.5
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHH
Q ss_conf 48996282255889762157785668789987670898267888824442089999999876559983348999999999
Q gi|254780445|r 55 NFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQAC 134 (963)
Q Consensus 55 ~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c 134 (963)
+|++.+|||||||+||+||++++++.|+++||+||+||+|+|++||||||+|||.+|+++....++ ..++.+.|
T Consensus 1 ~~~i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D~~G~~i~~~a~~~~~~~~~------~~~~~~~~ 74 (334)
T cd00668 1 KFYITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWDEHGLPIENKAEKEGGIEGK------KEEFLEDP 74 (334)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCC------HHHHHHHH
T ss_conf 989955998888861466759899999999999816995360686686568999999996871210------57777539
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEE
Q ss_conf 99999999999999997060776369811577679899999999999879611034302205743573650021013210
Q gi|254780445|r 135 RDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVD 214 (963)
Q Consensus 135 ~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~ 214 (963)
++++.++++.++++|++||+++||+++|.|++|.|.+.++++|.+|+++|+||++..+|
T Consensus 75 ~~~~~~~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~~~G~iy~~~~~v--------------------- 133 (334)
T cd00668 75 KEWVDKYIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLYEKGLIYRGERPV--------------------- 133 (334)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCC---------------------
T ss_conf 99999999999999999689768787611599999999999999999879989505667---------------------
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHC
Q ss_conf 57799983303753112200110000005788654453227767458998306653111123743551211188888760
Q gi|254780445|r 215 SDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQT 294 (963)
Q Consensus 215 ~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~ 294 (963)
T Consensus 134 -------------------------------------------------------------------------------- 133 (334)
T cd00668 134 -------------------------------------------------------------------------------- 133 (334)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEE
Q ss_conf 98517841001111128575431378665125511443223322445405640578988989987605212210022034
Q gi|254780445|r 295 NVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKV 374 (963)
Q Consensus 295 ~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~ 374 (963)
T Consensus 134 -------------------------------------------------------------------------------- 133 (334)
T cd00668 134 -------------------------------------------------------------------------------- 133 (334)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECC
Q ss_conf 30234455102431001786321135544456754523566479821000000122113210132033331023663022
Q gi|254780445|r 375 PSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDK 454 (963)
Q Consensus 375 ~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~ 454 (963)
+.++|||++++
T Consensus 134 --------------------------------------------------------------------~~~~~~f~~~~- 144 (334)
T cd00668 134 --------------------------------------------------------------------RLTEQWFLKLS- 144 (334)
T ss_pred --------------------------------------------------------------------CCCCEEEEEHH-
T ss_conf --------------------------------------------------------------------75654777889-
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHC
Q ss_conf 455423689999875200000244434320244304-3200001123456722589825884732521124442122211
Q gi|254780445|r 455 KLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIEN-RPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQ 533 (963)
Q Consensus 455 ~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~-~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~ 533 (963)
.+++++++.++++++.|+..++++.+||++ ++||||||||+||+|+|+|+++++...
T Consensus 145 ------~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~~~d~~isR~~~wG~~~P~~~~~~~~~~---------------- 202 (334)
T cd00668 145 ------KLKDRLLEALEKNEIWPENVRNRFLNWLENGLRDWCISRQRYWGIPIPAWYCEDCGEV---------------- 202 (334)
T ss_pred ------HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCCCC----------------
T ss_conf ------9999999999848987789999999887467877525733467875561332567755----------------
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 887433564011146887887554566421000033354543322--------222333443100255444211124554
Q gi|254780445|r 534 GSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLG--------KDPKLAWPADVYLEGSDQHRGWFQHSL 605 (963)
Q Consensus 534 g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~~--------~~~~~~~PaD~~~eG~Dq~RgWF~s~l 605 (963)
...++....++.+|+||||||+.++....+ ..++.++|.|++++|+|++++|+..++
T Consensus 203 ---------------~~~~~~~~~~~~~~~~~Wfds~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~ 267 (334)
T cd00668 203 ---------------CPKCGKELKRETDVLDVWFDSGIGYLSALGYPNEEEGFEEFEYWYPADLHVIGKDIIRFHLIYWP 267 (334)
T ss_pred ---------------CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf ---------------66653113687653446641756543226786433256687617981698715613632999999
Q ss_pred HHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCC
Q ss_conf 443311784000013037826213453000012344333664113675788788871-787665544
Q gi|254780445|r 606 LESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRL 671 (963)
Q Consensus 606 l~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~ 671 (963)
+.+.+++++.||+++++|||+++++|+|||||+||+|+|.+++++||||++|||+++ ++.++|.+|
T Consensus 268 a~~~a~~~~~~~~~~~~~g~~~~~~G~KMSKS~GN~i~~~~~l~~~g~D~lR~~l~~~~~~~~d~~f 334 (334)
T cd00668 268 AMLLALFGKPPPKNVLVHGLVLDEGGRKMSKSLGNVVDPLDAIEKYGADALRYYLLSAAPEGEDLNF 334 (334)
T ss_pred HHHHHCCCCCCHHHEEECCCEECCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 9999844985087757420198389957388699888989999875948999999942998889998
No 28
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=100.00 E-value=0 Score=566.29 Aligned_cols=368 Identities=25% Similarity=0.392 Sum_probs=276.9
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
Q ss_conf 89962822558897621577856687899876708982678888244420899999998765599833489999999999
Q gi|254780445|r 56 FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACR 135 (963)
Q Consensus 56 f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~ 135 (963)
|++..||||+||.|||||++++++.|+++||+||+||+|+|++|||+||+||+.+|+++ |. ++ +
T Consensus 1 ~~I~~ppP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~g~~i~~ka~~~----g~-----~~-------~ 64 (388)
T pfam09334 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKE----GV-----TP-------Q 64 (388)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHC----CC-----CH-------H
T ss_conf 98937898888860022418899999999999956997071386485379999999984----99-----99-------9
Q ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEEC
Q ss_conf 99999999999999970607763698115776798999999999998796110343022057435736500210132105
Q gi|254780445|r 136 DSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDS 215 (963)
Q Consensus 136 ~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~ 215 (963)
+++.++++.++++|++||++ +++.+.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|.|++.+|+. ..
T Consensus 65 e~~~~y~~~~~~~~~~lgi~--~D~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g---~c 139 (388)
T pfam09334 65 ELVDRYHEEFKELFKKFNIS--FDDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVEG---TC 139 (388)
T ss_pred HHHHHHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCC---CC
T ss_conf 99999999999999983996--78786579846899999998751406815532411223666666665333075---45
Q ss_pred CEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCC
Q ss_conf 77999833037531122001100000057886544532277674589983066531111237435512111888887609
Q gi|254780445|r 216 DSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTN 295 (963)
Q Consensus 216 ~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~ 295 (963)
T Consensus 140 -------------------------------------------------------------------------------- 139 (388)
T pfam09334 140 -------------------------------------------------------------------------------- 139 (388)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEE
Q ss_conf 85178410011111285754313786651255114432233224454056405789889899876052122100220343
Q gi|254780445|r 296 VKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVP 375 (963)
Q Consensus 296 ~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~ 375 (963)
| ... ...++|..+
T Consensus 140 ---------------------p-----------~~~--------------~~~~~~~~~--------------------- 152 (388)
T pfam09334 140 ---------------------P-----------YCG--------------SEDARGDQC--------------------- 152 (388)
T ss_pred ---------------------C-----------CCC--------------CCCCCCCHH---------------------
T ss_conf ---------------------7-----------557--------------501366410---------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 02344551024310017863211355444567545235664798210000001221132101320333310236630224
Q gi|254780445|r 376 SPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKK 455 (963)
Q Consensus 376 ~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~ 455 (963)
+ ..|..+ +...+..|+||||++|++++.++|||++|++
T Consensus 153 ----------e----~~G~~~---------------------------e~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~- 190 (388)
T pfam09334 153 ----------E----VCGRPL---------------------------EPTELINPRSAISGSTPELKEEEHYFFRLSK- 190 (388)
T ss_pred ----------H----CCCCCC---------------------------CHHHHCCCCCCCCCCCCEEECCCCHHHHHHH-
T ss_conf ----------0----238827---------------------------8677417644467997544324412330688-
Q ss_pred CCCCHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHC
Q ss_conf 5542368999987520000-0244434320244304-3200001123456722589825884732521124442122211
Q gi|254780445|r 456 LGDGSTLRSRALSEVEKIR-FFPSSGKNRLRSMIEN-RPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQ 533 (963)
Q Consensus 456 ~~~~~~~k~~~l~~i~~v~-~~P~~~k~r~~~~i~~-~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~ 533 (963)
+++++++.++... ..|+..++...+|+++ ++|||||||++||+|||- ++++
T Consensus 191 ------~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~Dw~ISR~~~WG~~iP~---~~~~------------------ 243 (388)
T pfam09334 191 ------FQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGIPVPG---DPGK------------------ 243 (388)
T ss_pred ------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCE------------------
T ss_conf ------9999999995499889889999999998668887644124778750488---8980------------------
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCC-----CCCCCCCCCCCHHHH
Q ss_conf 8874335640111468878875545664210000333545433------22222333443-----100255444211124
Q gi|254780445|r 534 GSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTIL------LGKDPKLAWPA-----DVYLEGSDQHRGWFQ 602 (963)
Q Consensus 534 g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~------~~~~~~~~~Pa-----D~~~eG~Dq~RgWF~ 602 (963)
+++|||||...+... ....+..+||. .++..|+|++| ||
T Consensus 244 ----------------------------~~~vW~da~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~i~~~G~Di~~--fh 293 (388)
T pfam09334 244 ----------------------------VIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIR--FH 293 (388)
T ss_pred ----------------------------EEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC--HH
T ss_conf ----------------------------687723565552000277777817888644367762000106764142--01
Q ss_pred HHHHHHHHC-CCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCHHHHHHH
Q ss_conf 554443311-784000013037826213453000012344333664113675788788871-787665544310256777
Q gi|254780445|r 603 HSLLESCAT-RGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGKNIIQTNI 680 (963)
Q Consensus 603 s~ll~~~~~-~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~~~l~~~~ 680 (963)
+.+..+..+ .+.+|++++++|||++. +|+|||||+||+|+|.+++++||||++|||+++ +++++|++||++.+.+..
T Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~g~v~~-~G~KMSKSlGN~i~~~d~i~~ygaDalR~~L~~~~~~~~d~~Fs~~~~~~~~ 372 (388)
T pfam09334 294 AIYWPAMLMAAGLPLPTQVFAHGWLTV-EGGKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDFVERV 372 (388)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEE-CCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 789999998389998866787579975-9944478699878889999887828999999953999899989999999998
Q ss_pred H--HHHHHCC-CCC
Q ss_conf 6--4000001-100
Q gi|254780445|r 681 D--TYRKLRN-TIR 691 (963)
Q Consensus 681 ~--~~~kl~N-t~r 691 (963)
+ +.+|||| +.|
T Consensus 373 n~~~~~kl~N~~~r 386 (388)
T pfam09334 373 NSELANDLGNLVNR 386 (388)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 79988877657733
No 29
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=517.17 Aligned_cols=351 Identities=25% Similarity=0.389 Sum_probs=241.5
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CHHHCCHHH
Q ss_conf 489962822558897621577856687899876708982678888244420899999998765599-----833489999
Q gi|254780445|r 55 NFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGK-----KKDDIPVNE 129 (963)
Q Consensus 55 ~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~-----~~~~~~~~~ 129 (963)
||++-.+||||||+|||||++++++.||++||+||+|++|+|++|+|+||+|||++|++.....-+ ....++..+
T Consensus 1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~ 80 (376)
T cd00812 1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE 80 (376)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
T ss_conf 97998589888974546886989999999999995599704688456567899999999687477653011110001887
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHH
Q ss_conf 999--999999999999999999706077636981157767989999999999987961103430220574357365002
Q gi|254780445|r 130 FRQ--ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAE 207 (963)
Q Consensus 130 ~~~--~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~E 207 (963)
+.. -++++++++++.++++|++||+++||+|.|.|++|.+.+.++++|.+|+++|+||++..+|+||+.|++-
T Consensus 81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~----- 155 (376)
T cd00812 81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQW----- 155 (376)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEE-----
T ss_conf 861279999999999999999998098737686643377789999999999999889889517555364677605-----
Q ss_pred HEEEEEECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHH
Q ss_conf 10132105779998330375311220011000000578865445322776745899830665311112374355121118
Q gi|254780445|r 208 IEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLA 287 (963)
Q Consensus 208 vey~d~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~ 287 (963)
|++.. + .| .
T Consensus 156 -----------f~~~~--------------------------------~--~~--------------------------~ 164 (376)
T cd00812 156 -----------FLKYS--------------------------------T--EW--------------------------A 164 (376)
T ss_pred -----------EECCC--------------------------------H--HH--------------------------H
T ss_conf -----------74166--------------------------------7--88--------------------------9
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHH
Q ss_conf 88887609851784100111112857543137866512551144322332244540564057898898998760521221
Q gi|254780445|r 288 QSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLN 367 (963)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~ 367 (963)
+.+ +..+.++. .+ |..-...+.
T Consensus 165 ~~~---------------~~~~~~~~---------------~~-----------------p~~~~~~~~----------- 186 (376)
T cd00812 165 ERL---------------LKDLEGLD---------------TW-----------------PEEVKNMQE----------- 186 (376)
T ss_pred HHH---------------HHHHHCCC---------------CC-----------------CHHHHHHHH-----------
T ss_conf 998---------------74042046---------------78-----------------688999999-----------
Q ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 00220343023445510243100178632113554445675452356647982100000012211321013203333102
Q gi|254780445|r 368 RSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQ 447 (963)
Q Consensus 368 ~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~Q 447 (963)
..+..| .+
T Consensus 187 -----------------------------------------~~~~~~-------------------------------~~ 194 (376)
T cd00812 187 -----------------------------------------NWIGWL-------------------------------KG 194 (376)
T ss_pred -----------------------------------------HHHHHC-------------------------------CC
T ss_conf -----------------------------------------987302-------------------------------46
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCC----CCCCCEEEEECCCCCEEECCCHH
Q ss_conf 36630224554236899998752000002444343202443043200001123----45672258982588473252112
Q gi|254780445|r 448 WFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQR----NWGVPICFFYNEKGEILLDKAIN 523 (963)
Q Consensus 448 WFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR----~WG~PIPi~~~e~~~~~~~~~~~ 523 (963)
|.++... +.+.. +..++|||||||| +||+|||+++++++.....
T Consensus 195 ~~~~~~~-------------------------~~~~~---~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~~~---- 242 (376)
T cd00812 195 WACARRY-------------------------GLGTV---LPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPVCP---- 242 (376)
T ss_pred CEEEEEC-------------------------CCCCC---CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECC----
T ss_conf 5254111-------------------------11540---655544341344456666770021597567864146----
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC-----CC-----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 444212221188743356401114688788755456642100003335-----45-----43322222333443100255
Q gi|254780445|r 524 DRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSAC-----TH-----TILLGKDPKLAWPADVYLEG 593 (963)
Q Consensus 524 ~~i~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~-----s~-----~~~~~~~~~~~~PaD~~~eG 593 (963)
.++.+..++.+++|+||||-. .+ .......+++|||+|+++.|
T Consensus 243 ---------------------------~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~G 295 (376)
T cd00812 243 ---------------------------KCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGG 295 (376)
T ss_pred ---------------------------CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEC
T ss_conf ---------------------------66755566544688657763014666784334476687999842886068813
Q ss_pred CCCCCHHHHHHHHHHHH---CCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCC
Q ss_conf 44421112455444331---1784000013037826213453000012344333664113675788788871-7876655
Q gi|254780445|r 594 SDQHRGWFQHSLLESCA---TRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQ 669 (963)
Q Consensus 594 ~Dq~RgWF~s~ll~~~~---~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~ 669 (963)
+|++|+++.-.++...+ +....|+++|++|||++. +|+|||||+||+|+|.+++++||||++|||+++ +++++|.
T Consensus 296 kDii~fH~~~~~~~~~~l~~~~~~~~p~~v~~hG~l~~-~G~KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~~~D~ 374 (376)
T cd00812 296 KEHAVNHLLYSRFNHKALFDEGTKEPPKGLRVQGMVLL-EGEKMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPPESDA 374 (376)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEC-CCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 35420136799999999986467779826687572966-99663778998849899998859549999999449955689
Q ss_pred CC
Q ss_conf 44
Q gi|254780445|r 670 RL 671 (963)
Q Consensus 670 ~~ 671 (963)
+|
T Consensus 375 ~F 376 (376)
T cd00812 375 NW 376 (376)
T ss_pred CC
T ss_conf 98
No 30
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=502.39 Aligned_cols=484 Identities=25% Similarity=0.387 Sum_probs=361.7
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 88489962822558897621577856687899876708982678888244420899999998765599833489999999
Q gi|254780445|r 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQ 132 (963)
Q Consensus 53 ~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~ 132 (963)
.++|.+-.++|||||+||+||+++++..||++||+||+|++|+|.-|.|.||+|||.+|+++ .+++.
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~---------g~tP~---- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE---------GITPQ---- 70 (558)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHC---------CCCHH----
T ss_conf 87389955898899986413678887899999999826975899951478777889999985---------99989----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE
Q ss_conf 99999999999999999970607763698115776798999999999998796110343022057435736500210132
Q gi|254780445|r 133 ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD 212 (963)
Q Consensus 133 ~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d 212 (963)
+++.++.+.+++.++.|++++| +-..|.++...+.++.+|.+|+++|+||.+..++.||++|++=|.|.+|+.
T Consensus 71 ---el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g-- 143 (558)
T COG0143 71 ---ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG-- 143 (558)
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCC--EECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEEC--
T ss_conf ---9999999999999998098543--001689777999999999999978987314435647354356456210205--
Q ss_pred EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHH
Q ss_conf 10577999833037531122001100000057886544532277674589983066531111237435512111888887
Q gi|254780445|r 213 VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIAN 292 (963)
Q Consensus 213 ~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~ 292 (963)
.+ | |+
T Consensus 144 -~c----------------------------------------p---~c------------------------------- 148 (558)
T COG0143 144 -TC----------------------------------------P---KC------------------------------- 148 (558)
T ss_pred -CC----------------------------------------C---CC-------------------------------
T ss_conf -58----------------------------------------9---86-------------------------------
Q ss_pred HCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE
Q ss_conf 60985178410011111285754313786651255114432233224454056405789889899876052122100220
Q gi|254780445|r 293 QTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI 372 (963)
Q Consensus 293 ~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l 372 (963)
|.+ ..-||..+.
T Consensus 149 -------------g~~--------------------~a~GD~Ce~----------------------------------- 160 (558)
T COG0143 149 -------------GGE--------------------DARGDQCEN----------------------------------- 160 (558)
T ss_pred -------------CCC--------------------CCCCCHHHH-----------------------------------
T ss_conf -------------753--------------------457643432-----------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 34302344551024310017863211355444567545235664798210000001221132101320333310236630
Q gi|254780445|r 373 KVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHM 452 (963)
Q Consensus 373 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~ 452 (963)
+|+.+.-... .=|+||+|+...++|.+..||+++
T Consensus 161 --------------------------------------------Cg~~~~P~~l--~~p~~~i~g~~p~~r~~~hyFf~L 194 (558)
T COG0143 161 --------------------------------------------CGRTLDPTEL--INPVCVISGATPEVREEEHYFFRL 194 (558)
T ss_pred --------------------------------------------CCCCCCCHHC--CCCEEEEECCCCCCCCCEEEEEEH
T ss_conf --------------------------------------------2675792121--798168647976433540599887
Q ss_pred CCCCCCCHHHHHHHHHHHHCC-C-CCCCCCCCCHHHHHHC-CCCCCCCC-CCCCCCCEEEEECCCCCEEECCCHHHHHHH
Q ss_conf 224554236899998752000-0-0244434320244304-32000011-234567225898258847325211244421
Q gi|254780445|r 453 DKKLGDGSTLRSRALSEVEKI-R-FFPSSGKNRLRSMIEN-RPDWLLSR-QRNWGVPICFFYNEKGEILLDKAINDRIIK 528 (963)
Q Consensus 453 d~~~~~~~~~k~~~l~~i~~v-~-~~P~~~k~r~~~~i~~-~~DW~ISR-qR~WG~PIPi~~~e~~~~~~~~~~~~~i~~ 528 (963)
++ +.+.+++.+++- . ..|++.++.+.+||++ ++|||||| .-.||+|+|- ..+
T Consensus 195 ~~-------~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~---~p~-------------- 250 (558)
T COG0143 195 SK-------FQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPG---DPG-------------- 250 (558)
T ss_pred HH-------HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC---CCC--------------
T ss_conf 98-------699999999739654588689999999997668664314589887725799---998--------------
Q ss_pred HHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CC--CCCCCCCCCCCCC----CCCCCCCC
Q ss_conf 222118874335640111468878875545664210000333545------43--3222223334431----00255444
Q gi|254780445|r 529 TFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTH------TI--LLGKDPKLAWPAD----VYLEGSDQ 596 (963)
Q Consensus 529 ~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~------~~--~~~~~~~~~~PaD----~~~eG~Dq 596 (963)
-|+-||||.-+.. ++ -...+++.|||+| +++-|+|+
T Consensus 251 --------------------------------kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDi 298 (558)
T COG0143 251 --------------------------------KVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDI 298 (558)
T ss_pred --------------------------------CEEEEEECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEECCCC
T ss_conf --------------------------------779996344889999954121058767898637788845999962456
Q ss_pred CCHHHHHHHHHHHHCC--CCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 2111245544433117--84000013037826213453000012344333664113675788788871-78766554431
Q gi|254780445|r 597 HRGWFQHSLLESCATR--GSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN-SDYHDDQRLGK 673 (963)
Q Consensus 597 ~RgWF~s~ll~~~~~~--~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~-~~~~~d~~~~~ 673 (963)
+| ||+..+..+.+. ...| ++|++|||++- +|+|||||+||+|+|.++++.||+|++|||++. .+.++|.+||.
T Consensus 299 i~--FHav~wPamL~~~~~~lP-~~i~ahg~l~~-~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~ 374 (558)
T COG0143 299 IR--FHAVYWPAMLMAAGLPLP-TRIFAHGFLTL-EGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSW 374 (558)
T ss_pred CC--CHHHHHHHHHHHCCCCCC-CEEEEEEEEEE-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCH
T ss_conf 74--324578999973899988-77984013997-794124428818717999987482385798887377888888899
Q ss_pred HHHHHHH--HHHHHHCCCCCCCCCCC-CCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0256777--64000001100000122-44445673101--1127888754368999999889876540122668899878
Q gi|254780445|r 674 NIIQTNI--DTYRKLRNTIRWMLGML-AHDTGNEPSLA--DMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS 748 (963)
Q Consensus 674 ~~l~~~~--~~~~kl~Nt~rf~l~~l-~~~~~~~~~~~--~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~ 748 (963)
+.+.+.. +..+++-|-+.-.++.. ..+++..+... .. ..|+-++.+...+.+.+.++|++++|++|+..++.++
T Consensus 375 ~~f~~rvN~dL~n~lgNl~~R~l~fi~k~~~g~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~ 453 (558)
T COG0143 375 EDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA 453 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999989988788899999999997525996886545553-4569999999999999999998625999999999999
Q ss_pred HHHCCCCHHHCCCHHHCCCCCCC-HHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 63024001010201222789980-8999-99999999999999997000448999999863886
Q gi|254780445|r 749 NAELSSFYFDIRKDSLYCDSPSS-LKRL-SSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE 810 (963)
Q Consensus 749 ~~dLS~~Yld~~Kdrly~~~~~s-~~R~-s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~ 810 (963)
. ..|-|++-.++ |.-.+++ ..|. ++..++..+++.+..+|+||||.+|+++|+.|+.+
T Consensus 454 ~--~~N~Yi~~~~P--W~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 454 S--RANKYIDEQAP--WKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred H--HHHHHHHCCCC--CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
T ss_conf 9--99887642898--023204729999999999999999999981586860299999982886
No 31
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=503.05 Aligned_cols=482 Identities=27% Similarity=0.393 Sum_probs=354.8
Q ss_pred CCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCC-HHHHHHHHHHHHHH
Q ss_conf 2558897621577-856687899876708982678888244420899999998765599833489-99999999999999
Q gi|254780445|r 63 PYANGHIHIGHAL-NKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIP-VNEFRQACRDSASA 140 (963)
Q Consensus 63 Py~nG~lH~GH~~-n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~-~~~~~~~c~~~a~~ 140 (963)
|||||.+|+||++ ++++.||++||+||||++|+|+-|.|+||.|||.+|+++ +++ |.+ ++.+
T Consensus 8 ~Y~Ng~pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEHG~kI~~~A~~~---------g~tqP~~-------~vd~ 71 (573)
T TIGR00398 8 PYANGKPHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE---------GLTQPKE-------LVDK 71 (573)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHC---------CCCCHHH-------HHHH
T ss_conf 66787112103667778999999998528974789851344687888869870---------8996489-------9999
Q ss_pred HHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHE--EEEEECCEE
Q ss_conf 999999999970607763698115776798999999999998796110343022057435736500210--132105779
Q gi|254780445|r 141 WVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIE--YHDVDSDSI 218 (963)
Q Consensus 141 ~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Eve--y~d~~~~s~ 218 (963)
+....+++++.+++++| +=-.|.|+.-.+.++.+|.+|++||+||.+.--..|||.|++=|++-.+. |.+..+|
T Consensus 72 ~~~~f~~~~~~lnI~fD--~F~RTTd~~H~~~v~~~f~~L~~nGyIY~~~~~g~YC~~c~~Fl~dr~~~~~yv~g~CP-- 147 (573)
T TIGR00398 72 YHEEFKKLWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLLENGYIYEKEIKGLYCPECESFLPDRKLVDDYVEGTCP-- 147 (573)
T ss_pred HHHHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCC--
T ss_conf 99999999987284567--65467688889999999999875377411003532347566536223200133467488--
Q ss_pred EEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCE
Q ss_conf 99833037531122001100000057886544532277674589983066531111237435512111888887609851
Q gi|254780445|r 219 LVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKI 298 (963)
Q Consensus 219 ~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 298 (963)
T Consensus 148 -------------------------------------------------------------------------------- 147 (573)
T TIGR00398 148 -------------------------------------------------------------------------------- 147 (573)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECC
Q ss_conf 78410011111285754313786651255114432233224454056405789889899876052122100220343023
Q gi|254780445|r 299 ALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPV 378 (963)
Q Consensus 299 ~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~v 378 (963)
-++..|- -
T Consensus 148 --------------------------------------------------~c~~~~~----------------------~ 155 (573)
T TIGR00398 148 --------------------------------------------------KCGSEDA----------------------R 155 (573)
T ss_pred --------------------------------------------------CCCCCCC----------------------C
T ss_conf --------------------------------------------------6887777----------------------7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCC
Q ss_conf 44551024310017863211355444567545235664798210000001221132101320333310236630224554
Q gi|254780445|r 379 DGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGD 458 (963)
Q Consensus 379 d~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~ 458 (963)
+|. .+--|.. ++. -.|+ =|.|-=|+...++|-+...|.++
T Consensus 156 gd~-------c~~Cg~~-leP------------~~Li--------------~P~c~~~~~~~~~~~~~hyFf~L------ 195 (573)
T TIGR00398 156 GDH-------CEVCGRH-LEP------------FELI--------------NPRCVICKNKPELRDSEHYFFRL------ 195 (573)
T ss_pred CCC-------CCCCCCC-CCC------------CHHC--------------CCCEEEECCEEEEECCCCCCCCC------
T ss_conf 877-------5546553-685------------0011--------------87025548800251354522353------
Q ss_pred CHHHHHHHHHHHHC-CCC--CCCCCCCCH-HHHHHC-CCCCCCCCCCC---CCCCEEEEECCCCCEEECCCHHHHHHHHH
Q ss_conf 23689999875200-000--244434320-244304-32000011234---56722589825884732521124442122
Q gi|254780445|r 459 GSTLRSRALSEVEK-IRF--FPSSGKNRL-RSMIEN-RPDWLLSRQRN---WGVPICFFYNEKGEILLDKAINDRIIKTF 530 (963)
Q Consensus 459 ~~~~k~~~l~~i~~-v~~--~P~~~k~r~-~~~i~~-~~DW~ISRqR~---WG~PIPi~~~e~~~~~~~~~~~~~i~~~~ 530 (963)
+.+.+.+.+.+++ .+. -++..++.+ .+|+++ ++||||||+-. ||+|||- ++
T Consensus 196 -~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~~~~~GL~D~~ItR~~~~lkWG~pvP~----~~---------------- 254 (573)
T TIGR00398 196 -SAFEKELEEWIKKNPESKSPASNVKNVAKQNWIKGGLKDLAITRDLVDLKWGIPVPN----DG---------------- 254 (573)
T ss_pred -HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCC----CC----------------
T ss_conf -688899999861488424218999999889985068743011036441211531789----89----------------
Q ss_pred HHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCC--CCCCCCCCCC------CCCCCCC
Q ss_conf 211887433564011146887887554566421000033354543-------322--2223334431------0025544
Q gi|254780445|r 531 KDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTI-------LLG--KDPKLAWPAD------VYLEGSD 595 (963)
Q Consensus 531 ~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~-------~~~--~~~~~~~PaD------~~~eG~D 595 (963)
...-|+-||||+=+...+ ..+ +.+..||+.+ +++-|+|
T Consensus 255 ---------------------------~p~~~~YVW~DAl~gYiss~~~~~~~~~~~~~~~~~W~~~~~~~~~~HfIGKD 307 (573)
T TIGR00398 255 ---------------------------APNKVVYVWFDALIGYISSLKALGIEKGLTEDWKKWWNNNSEDAELIHFIGKD 307 (573)
T ss_pred ---------------------------CCCCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEECCC
T ss_conf ---------------------------87967998720345699997521335687578998626888650278884241
Q ss_pred CCCHHHHHHHHHHHHCC-C---CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHH-HHCC-CCHHHHHHHHH-HCCCCCC
Q ss_conf 42111245544433117-8---400001303782621345300001234433366-4113-67578878887-1787665
Q gi|254780445|r 596 QHRGWFQHSLLESCATR-G---STPFTSLITHGFSVDENGEKMSKSKGNVVFPEE-IISE-SGADVLRYWAV-NSDYHDD 668 (963)
Q Consensus 596 q~RgWF~s~ll~~~~~~-~---~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~-ii~~-yGaD~lR~~~~-~~~~~~d 668 (963)
|+| ||+..+.++.+- | ..| ++|++|||+..+ |+|||||+||||+|.+ +++. ||+|.+|||++ ..+..+|
T Consensus 308 I~~--FH~iyWPa~L~~~~eN~~lP-~q~~~hGyl~~e-G~KMSKS~G~vv~~~~~~~~~~~g~D~lRYYl~~~~~~~~D 383 (573)
T TIGR00398 308 IVR--FHTIYWPAMLMGLGENLPLP-TQVFAHGYLTVE-GQKMSKSLGNVVDPEDDLLARGYGADILRYYLLKEVPLGKD 383 (573)
T ss_pred CCC--HHHHHHHHHHHHCCCHHHHH-HHHEEEEEEEEC-CEEECCCCCCEECHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 202--03334458885112100212-132430168847-84432324753232178764478805788899864243447
Q ss_pred CCCCCHHHHHHH--HHHHHHCCCCCCCCCCCC-CCCCCCCCH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 544310256777--640000011000001224-444567310--------------111278887543689999998898
Q gi|254780445|r 669 QRLGKNIIQTNI--DTYRKLRNTIRWMLGMLA-HDTGNEPSL--------------ADMPALEQLMLHRLTELDQVVREA 731 (963)
Q Consensus 669 ~~~~~~~l~~~~--~~~~kl~Nt~rf~l~~l~-~~~~~~~~~--------------~~l~~~DkwiLskl~~~i~~v~~~ 731 (963)
.+|+.+.+.... +..++|-|-+.-.++... .+++..+.. ..+.+.|.-++.++++..+++.++
T Consensus 384 ~~F~~~~f~~r~N~~L~n~lGNl~nR~~~f~~k~f~g~~~~~~~~nfqfqeifqneP~l~~~~~~l~~~~~~~~~~~~~~ 463 (573)
T TIGR00398 384 GDFSWEDFVERVNADLANDLGNLLNRTLGFIKKYFNGVLPSVDETNFQFQEIFQNEPKLTEEDKELLKKINETLEQIDKA 463 (573)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 65688999999768877655589999999998873562110101234566665037652235668999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHCC
Q ss_conf 7654012266889987863024001010201222789980899999999999---9999999970004489999998638
Q gi|254780445|r 732 YDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRI---LCRHLIIWIAPILPFTAEEAWLSLN 808 (963)
Q Consensus 732 ~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~---il~~l~~lLaPi~P~~aEEiw~~l~ 808 (963)
+++++|++|+..|+..+. ..|-||+=.++ |.-..++.....++.++.. +++.+..||.||||.+++.+.+.|+
T Consensus 464 ~~~~~f~~Al~~~~~L~~--~gNkyi~~~~P--W~l~k~~~~~~~l~~~~~~~~e~~~~l~~Ll~P~~P~~~~k~~~~~n 539 (573)
T TIGR00398 464 LESFEFRKALEEILKLAD--RGNKYIDDNEP--WELAKQSEKLKELLAVCSLVAELIRVLSILLYPFMPKLSEKILKLLN 539 (573)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHCCC--CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 862038999999999999--86147652388--71325706799999999999999999999842410247899999838
Q ss_pred CCCC
Q ss_conf 8677
Q gi|254780445|r 809 PEAV 812 (963)
Q Consensus 809 ~~~~ 812 (963)
-+.+
T Consensus 540 ~~~~ 543 (573)
T TIGR00398 540 FELE 543 (573)
T ss_pred CCHH
T ss_conf 8701
No 32
>KOG0436 consensus
Probab=100.00 E-value=0 Score=355.37 Aligned_cols=461 Identities=23% Similarity=0.364 Sum_probs=302.8
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 88489962822558897621577856687899876708982678888244420899999998765599833489999999
Q gi|254780445|r 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQ 132 (963)
Q Consensus 53 ~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~ 132 (963)
.+.|+|-.|=-|+|..+||||+++-.+.|.++||+|++|..|.|..|.|-|||-|+.+|... |. .+.+
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn----G~-----~P~e--- 105 (578)
T KOG0436 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN----GR-----NPPE--- 105 (578)
T ss_pred CCEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC----CC-----CHHH---
T ss_conf 85059845513147885145799999999999998635880686037775442243368655----99-----9078---
Q ss_pred HHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEE
Q ss_conf 99999999999999999970607763698115776798999999999998796110343022057435736500210132
Q gi|254780445|r 133 ACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHD 212 (963)
Q Consensus 133 ~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d 212 (963)
.| .+..+...+-++..|+.+ .+-..|.||+.++.|+.....++++|+||+|.+-=.||.+|+|-+-|++|.-
T Consensus 106 ~c----Dr~s~~f~qL~k~~gi~y--t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k-- 177 (578)
T KOG0436 106 LC----DRISQSFRQLWKDAGIAY--TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK-- 177 (578)
T ss_pred HH----HHHHHHHHHHHHHHCCCH--HHEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHHHC--
T ss_conf 88----665199999999829633--4212248910899999999999867836520235168605300287888713--
Q ss_pred EECCEEEEEEEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHH
Q ss_conf 10577999833037531122001100000057886544532277674589983066531111237435512111888887
Q gi|254780445|r 213 VDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIAN 292 (963)
Q Consensus 213 ~~~~s~~v~F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~ 292 (963)
+|
T Consensus 178 ------------------------------------------~p------------------------------------ 179 (578)
T KOG0436 178 ------------------------------------------NP------------------------------------ 179 (578)
T ss_pred ------------------------------------------CC------------------------------------
T ss_conf ------------------------------------------88------------------------------------
Q ss_pred HCCCCEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCE
Q ss_conf 60985178410011111285754313786651255114432233224454056405789889899876052122100220
Q gi|254780445|r 293 QTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDI 372 (963)
Q Consensus 293 ~~~~~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l 372 (963)
--++.+|.|+.|--+|... ++.|-
T Consensus 180 ------------------------------------~~~gk~vsmEsg~~vv~~k----E~NY~---------------- 203 (578)
T KOG0436 180 ------------------------------------CPPGKVVSMESGNPVVWRK----EDNYF---------------- 203 (578)
T ss_pred ------------------------------------CCCCCEEEECCCCCEEEEC----CCCEE----------------
T ss_conf ------------------------------------9998545404689426761----56501----------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 34302344551024310017863211355444567545235664798210000001221132101320333310236630
Q gi|254780445|r 373 KVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHM 452 (963)
Q Consensus 373 ~~~~~vd~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~ 452 (963)
| -+ ..-++.+++.|+.+
T Consensus 204 ------------------F-rL---------Skfqk~l~d~lrkN----------------------------------- 220 (578)
T KOG0436 204 ------------------F-RL---------SKFQKPLEDHLRKN----------------------------------- 220 (578)
T ss_pred ------------------E-EH---------HHHHHHHHHHHHCC-----------------------------------
T ss_conf ------------------0-08---------75512899998449-----------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHH-CCCCCCCCC--CC-CCCCCEEEEECCCCCEEECCCHHHHHH
Q ss_conf 22455423689999875200000-24443432024430-432000011--23-456722589825884732521124442
Q gi|254780445|r 453 DKKLGDGSTLRSRALSEVEKIRF-FPSSGKNRLRSMIE-NRPDWLLSR--QR-NWGVPICFFYNEKGEILLDKAINDRII 527 (963)
Q Consensus 453 d~~~~~~~~~k~~~l~~i~~v~~-~P~~~k~r~~~~i~-~~~DW~ISR--qR-~WG~PIPi~~~e~~~~~~~~~~~~~i~ 527 (963)
-+| .|+.-++...+||+ +++|-.||| +| -||+|.|- ++.+
T Consensus 221 --------------------P~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~---ddsQ------------ 265 (578)
T KOG0436 221 --------------------PRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPG---DDSQ------------ 265 (578)
T ss_pred --------------------CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCC---CCCC------------
T ss_conf --------------------97467607788999999737986532570330134888899---9862------------
Q ss_pred HHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12221188743356401114688788755456642100003335454332---------222233344310025544421
Q gi|254780445|r 528 KTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL---------GKDPKLAWPADVYLEGSDQHR 598 (963)
Q Consensus 528 ~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~---------~~~~~~~~PaD~~~eG~Dq~R 598 (963)
++-||||+-+....+. +..+..+|||.+++.|+|+.|
T Consensus 266 ----------------------------------tIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlr 311 (578)
T KOG0436 266 ----------------------------------TIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILR 311 (578)
T ss_pred ----------------------------------EEEEEHHHHHHHHHHHCCCCHHCCCCCEEECCCCCEEEEHHHHHHH
T ss_conf ----------------------------------6987599886578860688210240001523787512320144566
Q ss_pred HHHHHHHHHHHHCC-C-CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HCCCCCCCCCCCHH
Q ss_conf 11245544433117-8-400001303782621345300001234433366411367578878887-17876655443102
Q gi|254780445|r 599 GWFQHSLLESCATR-G-STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV-NSDYHDDQRLGKNI 675 (963)
Q Consensus 599 gWF~s~ll~~~~~~-~-~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~-~~~~~~d~~~~~~~ 675 (963)
||...+.+..+- | ..| +.|++||+-. .+|.|||||+|||+||.+++++||+|++|||++ .+.++.|-+++++-
T Consensus 312 --FHavYWPafLmaAGlplP-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eek 387 (578)
T KOG0436 312 --FHAVYWPAFLMAAGLPLP-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEK 387 (578)
T ss_pred --HHHHHHHHHHHHCCCCCC-CEEEEEEEEE-ECCEECCHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHH
T ss_conf --455451899986699986-1798841265-422210212046468899998838441566755535207888812999
Q ss_pred HHHHHH--HHHHHCCCC------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 567776--400000110------000012244445673101112788875436899999988987654012266889987
Q gi|254780445|r 676 IQTNID--TYRKLRNTI------RWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNF 747 (963)
Q Consensus 676 l~~~~~--~~~kl~Nt~------rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F 747 (963)
+....+ .-+++-|.+ ++...|. ............+.+--+.+.+.++.+.+.+.|++|++..|+.++..-
T Consensus 388 l~k~~n~~La~~lG~LlnRc~gkkln~sn~--e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si 465 (578)
T KOG0436 388 LIKIVNAHLANTLGNLLNRCLGKKLNISNC--ESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSI 465 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHCC--CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 999999999999989988875213570015--630024774255314528999997589998540333099999999999
Q ss_pred HHHHCCCCHHHCCCH-HHCCCCCCCHHHHHHHHHHH---HHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 863024001010201-22278998089999999999---999999999700044899999986388
Q gi|254780445|r 748 SNAELSSFYFDIRKD-SLYCDSPSSLKRLSSIAVIR---ILCRHLIIWIAPILPFTAEEAWLSLNP 809 (963)
Q Consensus 748 ~~~dLS~~Yld~~Kd-rly~~~~~s~~R~s~~~~L~---~il~~l~~lLaPi~P~~aEEiw~~l~~ 809 (963)
++. .|-|++..++ .|..++..+..-.+ .++. ++++.+..+|.||+|-++.+++..|+-
T Consensus 466 ~n~--~ntlvq~~aPWkl~~dsq~~~~~la--~~~~~~le~lrv~~illqpv~Psls~~llsqlgv 527 (578)
T KOG0436 466 GNA--GNTLVQQRAPWKLFKDSQVSAEELA--KVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGV 527 (578)
T ss_pred HHH--HHHHHHHCCCCEECCCCCCCHHHHH--HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 975--3156650687021114673689999--9999999999999998723565367999987098
No 33
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=0 Score=355.32 Aligned_cols=132 Identities=27% Similarity=0.438 Sum_probs=117.5
Q ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHH
Q ss_conf 48996282255889762157785668789987670898267888824442089999999876559983348999999999
Q gi|254780445|r 55 NFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQAC 134 (963)
Q Consensus 55 ~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c 134 (963)
+|++--+|||+||.||+||++++++.|++.||.|++||+|.|+.|+|+||.+|+.+|.++ | +++
T Consensus 1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~kA~~~----g-----~~~------- 64 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE----G-----VTP------- 64 (319)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC----C-----CCH-------
T ss_conf 989968998788985533068899999999999965995699687778708999999983----9-----987-------
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCC
Q ss_conf 9999999999999999706077636981157767989999999999987961103430220574357365
Q gi|254780445|r 135 RDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLA 204 (963)
Q Consensus 135 ~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La 204 (963)
.+++.++++.+++++++||+. ++....|.+|.+...++..|.+|.++|++|++...++|||.|+..|+
T Consensus 65 ~el~~~y~~~~~~~~~~L~I~--~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~ 132 (319)
T cd00814 65 QELCDKYHEIFKELFKWLNIS--FDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP 132 (319)
T ss_pred HHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCC
T ss_conf 999999999999999984998--78676678806899999999999978988884102636588764564
No 34
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00 E-value=5.2e-43 Score=315.93 Aligned_cols=176 Identities=43% Similarity=0.738 Sum_probs=166.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4310256777640000011000001224444567--31011127888754368999999889876540122668899878
Q gi|254780445|r 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNE--PSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS 748 (963)
Q Consensus 671 ~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~--~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~ 748 (963)
+|+++++++.+.|||||||+||++||+.+++... .+..+++.+|||||+++++++++++++|++|+|+.|++.|++|+
T Consensus 1 is~~iL~~~~e~~rKiwNt~RF~l~nl~~~~~~~~~~~~~~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 98899999999999999999999986379994334589222879899999999999999999998389999999999994
Q ss_pred HHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC--CCCEEECCCCCCCHHH
Q ss_conf 63024001010201222789980899999999999999999997000448999999863886--7734533588998356
Q gi|254780445|r 749 NAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE--AVSVHLELFPIIPLEW 826 (963)
Q Consensus 749 ~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~--~~SI~~~~wP~~~~~~ 826 (963)
+++||+||++++||||||++.++..|+++|+||+.|++.++++||||+||+|||+|+++++. .+|||+++||++++.+
T Consensus 81 ~~~ls~~Yle~~K~rly~~~~~~~~r~~~~~~L~~vl~~~l~llaPi~Pf~tEeiw~~l~~~~~~~Si~l~~~P~~~~~~ 160 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEW 160 (180)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCC
T ss_conf 02103599999779761588883899999999999999989874400045399999875668999975714899998010
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 89899999999999999999
Q gi|254780445|r 827 QNACLSKKWGKILQLRKVVT 846 (963)
Q Consensus 827 ~d~~le~~~~~l~~ir~~V~ 846 (963)
.|+++++.|+.++++|+.|+
T Consensus 161 ~d~~le~~~~~l~~ir~~v~ 180 (180)
T cd07960 161 KDEELEEKWEKLLALRDEVN 180 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999999998759
No 35
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=100.00 E-value=2e-37 Score=277.24 Aligned_cols=174 Identities=20% Similarity=0.310 Sum_probs=151.6
Q ss_pred CCCHHHHH-HHHHHHHHCCCCCCCCCCCC--CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43102567-77640000011000001224--44456--731011127888754368999999889876540122668899
Q gi|254780445|r 671 LGKNIIQT-NIDTYRKLRNTIRWMLGMLA--HDTGN--EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLT 745 (963)
Q Consensus 671 ~~~~~l~~-~~~~~~kl~Nt~rf~l~~l~--~~~~~--~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~ 745 (963)
|++++++. .+++.+||||++||++++.. ++++. ....++++.+|+|||+++++++++++++|++|+|+.|++.|+
T Consensus 1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98889999983589999989999996221017995434556010558899999999999999999998011999999999
Q ss_pred HHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC----CCCCEEECCCCC
Q ss_conf 8786302400101020122278998089999999999999999999700044899999986388----677345335889
Q gi|254780445|r 746 NFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNP----EAVSVHLELFPI 821 (963)
Q Consensus 746 ~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l~~----~~~SI~~~~wP~ 821 (963)
+|+ ++||+||++++|+|+|++.. +..|++++.||+.||..+++||||||||+|||+||.|.+ ..+|||++.||+
T Consensus 81 ~F~-~~l~~wYie~~K~rl~~~~~-~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P~ 158 (183)
T cd07961 81 EFI-DELTNWYIRRNRKRFWGEEG-DDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPE 158 (183)
T ss_pred HHH-HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCC
T ss_conf 999-99989999998899970566-3888999999999999999975764024399999986024689888032006899
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9835689899999999999999999
Q gi|254780445|r 822 IPLEWQNACLSKKWGKILQLRKVVT 846 (963)
Q Consensus 822 ~~~~~~d~~le~~~~~l~~ir~~V~ 846 (963)
+++.|.|+++++.|+.++++.+.|+
T Consensus 159 ~~~~~~d~~le~~~~~l~~ii~~iR 183 (183)
T cd07961 159 VDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8810269999999999999999759
No 36
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00 E-value=2.6e-33 Score=248.82 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=95.2
Q ss_pred CCCCCCCEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 56888848996282-25588976215778566878998767089826788882444208999999987655998334899
Q gi|254780445|r 49 SAVGRKNFTLHDGP-PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPV 127 (963)
Q Consensus 49 ~~~~~~~f~l~dgP-Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~ 127 (963)
.++++-+|.+ .|| .| +.+|||||+++++.|+++||+|++|++|.|..|.|-||.+|+.+|+++ .+++
T Consensus 5 ~~~~~v~~Yi-cgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~---------g~~p 72 (301)
T pfam01406 5 LHQGKVNMYV-CGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQ---------GESF 72 (301)
T ss_pred CCCCEEEEEE-CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH---------CCCH
T ss_conf 8799378997-899068--997522336899999999999974994699967786317999999980---------9865
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 999999999999999999999997060776369811577679899999999999879611034
Q gi|254780445|r 128 NEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGI 190 (963)
Q Consensus 128 ~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~ 190 (963)
. +++.++++..++.+++|++..+-.. -.|. ++...++..+.+|++||.+|.+.
T Consensus 73 ~-------e~~d~~~~~F~~~~~~L~I~~~d~~-~rtT--ehi~~v~~~i~~L~~kG~~Y~~~ 125 (301)
T pfam01406 73 R-------ELAARFITAYTKDMDALNVLPPDLE-PRVT--EHIDEIIEFIERLIKKGYAYVSD 125 (301)
T ss_pred H-------HHHHHHHHHHHHHHHHHCCCCCCCC-CCCC--CCHHHHHHHHHHHHHCCCEEECC
T ss_conf 3-------7999999999988998498289868-7754--35799999999999779768726
No 37
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.97 E-value=1.2e-30 Score=230.42 Aligned_cols=135 Identities=22% Similarity=0.420 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43102567776400000110000012244445673101112788875436899999988987654012266889987863
Q gi|254780445|r 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNA 750 (963)
Q Consensus 671 ~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~ 750 (963)
||++++++..++.+||||++||+++++.+.+.......+++.+|+|||++++++++.++++|++|+|++|++.|++|+++
T Consensus 1 ~~e~~i~~~~rf~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~Dkwil~~l~~~~~~i~~~~~~~~f~~a~~~l~~F~~~ 80 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98999899999999999999999875453687546610077999999999999999999999865899999999999899
Q ss_pred HCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 024001010201222789980899999999999999999997000448999999863
Q gi|254780445|r 751 ELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 751 dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l 807 (963)
+||+||+|++|+|+|.+ ++..+++++.||+.+++.+++|||||+||+|||+|+.|
T Consensus 81 ~ls~~Yie~~K~rl~~~--~~~~~~~~~~~l~~~l~~~l~llaP~~PfitEeiw~~l 135 (135)
T cd07962 81 DFCDWYLELVKPRLYGE--DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99899999979987299--78999999999999999999999878799999998439
No 38
>KOG1247 consensus
Probab=99.97 E-value=1.8e-29 Score=222.18 Aligned_cols=481 Identities=21% Similarity=0.316 Sum_probs=306.1
Q ss_pred CCCCCCCCHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 255889762157785668-7899876708982678888244420899999998765599833489999999999999999
Q gi|254780445|r 63 PYANGHIHIGHALNKILK-DVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW 141 (963)
Q Consensus 63 Py~nG~lH~GH~~n~~~k-Di~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~ 141 (963)
||+|..+|+|.+..-++. |++|||.+.+|++.+|.-|.|--|..+|.+|.+++ ++|.+ .| .++
T Consensus 23 pyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg---------~tP~e---lc----dKy 86 (567)
T KOG1247 23 PYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEG---------LTPQE---LC----DKY 86 (567)
T ss_pred CEECCCCCCCCEEEEEEEHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCC---------CCHHH---HH----HHC
T ss_conf 202166533664667764423012366778744785156654046679998756---------98789---88----722
Q ss_pred HHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEEEEECCEEEEE
Q ss_conf 99999999970607763698115776798999999999998796110343022057435736500210132105779998
Q gi|254780445|r 142 VKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVG 221 (963)
Q Consensus 142 i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~d~~~~s~~v~ 221 (963)
....+....=+++.+|-.. .|..|.--+-.|-+|.+|+++|++-...--+.+|..|++-||+--|+- +.
T Consensus 87 h~ihk~vy~Wf~IdfD~fg--rtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg---~c------ 155 (567)
T KOG1247 87 HGIHKVVYDWFKIDFDEFG--RTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEG---KC------ 155 (567)
T ss_pred CHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHHHCHHHCCCCCCCEEEEEEEHHHCCCCCCHHHHC---CC------
T ss_conf 1267888875156621037--606711327789886252115771100011577521124034044303---37------
Q ss_pred EEECCCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEE
Q ss_conf 33037531122001100000057886544532277674589983066531111237435512111888887609851784
Q gi|254780445|r 222 FPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALV 301 (963)
Q Consensus 222 F~l~~~~~~~~~~~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 301 (963)
T Consensus 156 -------------------------------------------------------------------------------- 155 (567)
T KOG1247 156 -------------------------------------------------------------------------------- 155 (567)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECCCCC
Q ss_conf 10011111285754313786651255114432233224454056405789889899876052122100220343023445
Q gi|254780445|r 302 CDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGR 381 (963)
Q Consensus 302 ~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~ 381 (963)
|+ .|-+| ..
T Consensus 156 ---------------p~-------------------------------C~yd~-------------------------AR 164 (567)
T KOG1247 156 ---------------PF-------------------------------CGYDD-------------------------AR 164 (567)
T ss_pred ---------------CC-------------------------------CCCCC-------------------------CC
T ss_conf ---------------88-------------------------------87765-------------------------32
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHH
Q ss_conf 51024310017863211355444567545235664798210000001221132101320333310236630224554236
Q gi|254780445|r 382 GFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGST 461 (963)
Q Consensus 382 G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~ 461 (963)
|-.-+..| .+++.... .-|-|--|..--.+|.++.-|+++|++
T Consensus 165 GDqcd~cG-----------------------------~l~N~~el--~~pkc~ic~~~p~~~~t~h~Fl~L~kl------ 207 (567)
T KOG1247 165 GDQCDKCG-----------------------------KLVNAAEL--KIPKCKICQAGPVVRQTQHLFLSLDKL------ 207 (567)
T ss_pred CHHHHHHH-----------------------------HHCCHHHH--CCCCHHEECCCCEEEEEEEEEEEHHHH------
T ss_conf 05666665-----------------------------42378772--385201002677355412799875776------
Q ss_pred HHHHHHHHHH----CCCCCCCCCCCCHHHHHH-CCCCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHCCCC
Q ss_conf 8999987520----000024443432024430-43200001123456722589825884732521124442122211887
Q gi|254780445|r 462 LRSRALSEVE----KIRFFPSSGKNRLRSMIE-NRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSD 536 (963)
Q Consensus 462 ~k~~~l~~i~----~v~~~P~~~k~r~~~~i~-~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g~d 536 (963)
+.++-+.++ +-.|- .++++...+||. +++.-||.|..-||||+|. |.
T Consensus 208 -~~~lee~~~~~~~~~~WS-~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl---e~----------------------- 259 (567)
T KOG1247 208 -EPRLEEWLRRTLVEGDWS-QNAQNITRSWLKDGLKPRCITRDLKWGTPVPL---EK----------------------- 259 (567)
T ss_pred -HHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH---HH-----------------------
T ss_conf -789999997305457776-11678999999746665200022556887674---55-----------------------
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC--C--CCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf 43356401114688788755456642100003335454332---22223334--4--3100-255444211124554443
Q gi|254780445|r 537 AWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILL---GKDPKLAW--P--ADVY-LEGSDQHRGWFQHSLLES 608 (963)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~r~~DvlDvWfDSg~s~~~~~---~~~~~~~~--P--aD~~-~eG~Dq~RgWF~s~ll~~ 608 (963)
| ..-|+-||||+-+-..... -++.+.|| | +++| .-|+|..- ||+.+..+
T Consensus 260 --f-------------------k~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVp--FHtviFP~ 316 (567)
T KOG1247 260 --F-------------------KDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVP--FHTVIFPC 316 (567)
T ss_pred --H-------------------CCCEEEEEECCCCEEEEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCCC--CEEEECCH
T ss_conf --1-------------------662799997375137885066667899984697440398874667776--14664124
Q ss_pred HHCCCCC--E-EEEECCCCCEECCCCCCHHCCCCCCCCHHHHHC-CCCHHHHHHHHHHC-CCCCCCCCCCH--HHHHHHH
Q ss_conf 3117840--0-001303782621345300001234433366411-36757887888717-87665544310--2567776
Q gi|254780445|r 609 CATRGST--P-FTSLITHGFSVDENGEKMSKSKGNVVFPEEIIS-ESGADVLRYWAVNS-DYHDDQRLGKN--IIQTNID 681 (963)
Q Consensus 609 ~~~~~~~--P-fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-~yGaD~lR~~~~~~-~~~~d~~~~~~--~l~~~~~ 681 (963)
..+-... + -+.+.+.-+..-++| |.|||+|-+|--.++.+ +.++|+-|+|+++. |-++|..||.+ .++..++
T Consensus 317 s~lgt~en~t~v~~l~aTeYLnyE~g-KFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nse 395 (567)
T KOG1247 317 SQLGTEENYTVVHHLSATEYLNYEDG-KFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSE 395 (567)
T ss_pred HHHCCCCCCHHHEEECHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 54167777332100015442002467-40145652220554335799888889887522676667767589999873599
Q ss_pred HHHHHCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 4000001100000122-444456731011127888754368999999889876540122668899878630240010102
Q gi|254780445|r 682 TYRKLRNTIRWMLGML-AHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIR 760 (963)
Q Consensus 682 ~~~kl~Nt~rf~l~~l-~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~ 760 (963)
.++.|-|...-.+... +.+++-.+.. ++..-|+-++...+.+..+..++||.-..++|++.+|+.+ ..+|-|+...
T Consensus 396 Ll~NLGNFvNR~l~fv~~~~~g~Vp~~-~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is--~~GNqylQ~~ 472 (567)
T KOG1247 396 LLNNLGNFVNRVLKFVAAKYNGVVPEM-ELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEIS--RRGNQYLQEN 472 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCE-EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC
T ss_conf 998888899999999987608716630-3068758899999999999999988778999999999999--7520887414
Q ss_pred CHHHCCCCCCCHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 0122278998089999999-9999999999997000448999999863886773453
Q gi|254780445|r 761 KDSLYCDSPSSLKRLSSIA-VIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHL 816 (963)
Q Consensus 761 Kdrly~~~~~s~~R~s~~~-~L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~ 816 (963)
++ +.....+..|..+.. +-..|...+..||.|+||-++.+|...++-. ++++.
T Consensus 473 ~~--~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp-~~~~~ 526 (567)
T KOG1247 473 TD--NKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLP-ETLFP 526 (567)
T ss_pred CC--CCHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCC
T ss_conf 20--00103220005526433668999999986365662069999984985-00179
No 39
>pfam08264 Anticodon_1 Anticodon-binding domain. This domain is found valyl and leucyl tRNA synthetases. It binds to the anticodon of the tRNA.
Probab=99.96 E-value=6.8e-29 Score=218.22 Aligned_cols=147 Identities=28% Similarity=0.467 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88754368999999889876540122668899878630240010102012227899808999999999999999999970
Q gi|254780445|r 714 EQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIA 793 (963)
Q Consensus 714 DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLa 793 (963)
|+|||+++++++++++++|++|+|++|++.+++|++++||+||++++|+|+|++..+ .++.++++|+++++.+++|||
T Consensus 1 Dkwil~~l~~~i~~v~~~~e~~~f~~a~~~l~~f~~~~l~~~Yle~~K~~l~~~~~~--~~~~~~~~l~~~l~~~l~ll~ 78 (148)
T pfam08264 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEDPD--ESKRRATTLYEVLETLLRLLA 78 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 989999999999999999980799999999999999999899999740521478806--777799999999999999983
Q ss_pred CHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 00448999999863886773453358899835689899999999999999999999999973899974440389
Q gi|254780445|r 794 PILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPT 867 (963)
Q Consensus 794 Pi~P~~aEEiw~~l~~~~~SI~~~~wP~~~~~~~d~~le~~~~~l~~ir~~V~~~le~~R~~k~I~~slea~v~ 867 (963)
||+||+|||+|+.++ ..+|||++.||+++....+...+..++ ++..|.++++..|++++|+.++++.+.
T Consensus 79 P~~PfitEeiw~~~~-~~~si~~~~wP~~~~~~~~~~~~~~~~----~~~~vi~~i~~~R~~~~i~~~~~~~v~ 147 (148)
T pfam08264 79 PFMPFITEELWQKLG-LKGSIHLAPWPEADEEALDEELEEEFE----LRQEIVQAIRKLRSELKIKKSLPLEVI 147 (148)
T ss_pred HHHHHHHHHHHHHCC-CCCEEECCCCCCCCCHHCCHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 310888999998679-998163049999990106999999999----999999999999986798989878510
No 40
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.94 E-value=5.6e-25 Score=191.07 Aligned_cols=139 Identities=28% Similarity=0.451 Sum_probs=104.3
Q ss_pred CCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCC-CCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 31002554442111245---54443311784000013037-826213453000012344333664113675788788871
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITH-GFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN 662 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~ 662 (963)
.|++.+|.|.. |=+ -+..|.+++++ ||-+..+| ||+. -+|+|||||+||+|.+.+++++|+++++||++++
T Consensus 221 ~DIH~GG~DL~---FPHHENEiAQs~a~~~~-~~a~yW~H~g~l~-i~g~KMSKSlgN~iti~dll~~y~~~~lR~~lLs 295 (460)
T PRK00260 221 FDIHGGGSDLI---FPHHENEIAQSEAATGK-PFANYWMHNGFVT-VNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLS 295 (460)
T ss_pred CEEEECCCCCC---CCCCCCHHHHHHHHHCC-CCCCEEEEEEEEE-ECCEEEECCCCCCCCHHHHHHHHCHHHHHHHHHH
T ss_conf 54762452677---89961099999886489-8652456510576-3671750357870019999987077999999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 7876655443102567776400000110000012244445673101112788875436899999988987-654012266
Q gi|254780445|r 663 SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEVV 741 (963)
Q Consensus 663 ~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a~ 741 (963)
+.|.+.++||++.+++..+.+.||+++++-+ ....... ....+.+++.+++ ++|+...|+
T Consensus 296 ~hYR~pl~fs~e~L~~a~~~l~rl~~~~~~~----~~~~~~~---------------~~~~~~~~F~~AL~DDLNTP~Al 356 (460)
T PRK00260 296 AHYRSPLNFSEEALEEAKKALERLYNALRNL----EPAVAPA---------------GGEEFEERFIEAMDDDFNTPEAL 356 (460)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHCCCCC---------------CHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 4689966779999999999999999999975----5402553---------------22789999999875227869999
Q ss_pred HHHHHHHH
Q ss_conf 88998786
Q gi|254780445|r 742 RQLTNFSN 749 (963)
Q Consensus 742 ~~i~~F~~ 749 (963)
..|++++.
T Consensus 357 a~Lfelvk 364 (460)
T PRK00260 357 AVLFELAK 364 (460)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 41
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.3e-21 Score=163.54 Aligned_cols=144 Identities=28% Similarity=0.451 Sum_probs=109.8
Q ss_pred CCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCC-CCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 31002554442111245---54443311784000013037-826213453000012344333664113675788788871
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITH-GFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN 662 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~ 662 (963)
.|.+.+|+|.. |=+ -+..|.+++|..||-+..+| |||. -+|+|||||+||++...+++++|++.++||++++
T Consensus 222 ~DIHgGG~DLi---FPHHENEiAQsea~~g~~~~a~yWmH~G~l~-i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls 297 (464)
T COG0215 222 FDIHGGGSDLI---FPHHENEIAQSEAATGVKPFAKYWMHNGFLN-IDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLS 297 (464)
T ss_pred CCEECCCCCCC---CCCCCCHHHHHHHHHCCCCCEEEEEECCEEE-ECCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHH
T ss_conf 51246850255---8886308999876429976005868826452-4672765235776679999865487999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 7876655443102567776400000110000012244445673101112788875436899999988987-654012266
Q gi|254780445|r 663 SDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEVV 741 (963)
Q Consensus 663 ~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a~ 741 (963)
+.|...++||++.+++..+.+.+|+|+++.+.....+.... .......++.+++ +.|++..|+
T Consensus 298 ~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~~----------------~~~~~~~~f~~al~DDfnt~~al 361 (464)
T COG0215 298 SHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAELA----------------DLKEFEARFREALDDDFNTPKAL 361 (464)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------------HHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 77577656689999999999999999999887401322211----------------06789999999987225808999
Q ss_pred HHHHHHHHH
Q ss_conf 889987863
Q gi|254780445|r 742 RQLTNFSNA 750 (963)
Q Consensus 742 ~~i~~F~~~ 750 (963)
+.|.+++..
T Consensus 362 ~~l~~l~~~ 370 (464)
T COG0215 362 AVLFELAKE 370 (464)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 42
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.86 E-value=8.5e-22 Score=169.04 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 10256777640000011000001224444567310111278887543689999998898765401226688998786302
Q gi|254780445|r 673 KNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAEL 752 (963)
Q Consensus 673 ~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dL 752 (963)
++.+++..++++||||+.||+++++.++.+.. ...+++.+|||||+++++++++++++|++|+|++|++.|++|+|++
T Consensus 1 eerve~~r~F~nKLWNa~rF~~~~~~~~~~~~-~~~~l~~~DrWIls~l~~~i~~v~~~~e~y~f~~a~~~l~~F~w~~- 78 (117)
T cd07375 1 EERLKQARAFLNRLYRLLSFFRKALGGTQPKW-DNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNEL- 78 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_conf 99999999999899999999985688788865-6322776279999999899999999999278999999999999936-
Q ss_pred CCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 40010102012227899808999999999999999999970004
Q gi|254780445|r 753 SSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPIL 796 (963)
Q Consensus 753 S~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~ 796 (963)
+||++++|+|+|.+ ..+.+++.||+.++..+++|||||.
T Consensus 79 -dwYie~~K~r~~~e----~~~~~~~~~L~~vl~~~lkLlhPFt 117 (117)
T cd07375 79 -NWYLDELKPALQTE----ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred -HHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -99999965630482----7579999999999999999819999
No 43
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.86 E-value=1.9e-20 Score=159.72 Aligned_cols=137 Identities=23% Similarity=0.329 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCCC-CEECCCCCCHHCCCCCCCCHHHHHCC-CCHHHHHHHHH
Q ss_conf 31002554442111245---544433117840000130378-26213453000012344333664113-67578878887
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITHG-FSVDENGEKMSKSKGNVVFPEEIISE-SGADVLRYWAV 661 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~~~ 661 (963)
.|++.+|+|.. |=+ -+..+.+++|..||-+..+|+ |+. -+|+|||||+||++.+.+++++ |.+.++||+++
T Consensus 242 ~DIHgGG~DL~---FPHHENEiAQsea~~g~~~~a~yWmH~g~l~-~~geKMSKSlGN~~ti~dl~~~g~~p~~iR~~lL 317 (411)
T TIGR03447 242 FDIQGGGSDLI---FPHHEFSAAHAEAATGVRRMARHYVHAGMIG-LDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLL 317 (411)
T ss_pred EEEECCCCCCC---CCCCHHHHHHHHHHHCCCHHHHHHHECCEEE-ECCEECCCCCCCEEEHHHHHHCCCCHHHHHHHHH
T ss_conf 57878860357---8885309999998668873766765300231-2870556668872579999864998999999997
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 17876655443102567776400000110000012244445673101112788875436899999988987-65401226
Q gi|254780445|r 662 NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEV 740 (963)
Q Consensus 662 ~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a 740 (963)
++.|.+.++|+++.+++..+.+.+++..+.- ... .. ...++.++.+++ +.++.-.|
T Consensus 318 ~~HYRspl~fs~~~L~~A~~~l~r~~~a~~~-------~~~--~~--------------~~~~~~~~~~Al~DDlNTp~A 374 (411)
T TIGR03447 318 AGHYRQDRDWTDAVLAEAEARLARWRAALAA-------TDA--PD--------------ATDLIARLRQHLANDLDTPAA 374 (411)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-------CCC--CC--------------HHHHHHHHHHHHHCCCCCHHH
T ss_conf 1448997688989999999999999998726-------677--52--------------267999999998601672999
Q ss_pred HHHHHHHHHH
Q ss_conf 6889987863
Q gi|254780445|r 741 VRQLTNFSNA 750 (963)
Q Consensus 741 ~~~i~~F~~~ 750 (963)
+..|.+++..
T Consensus 375 la~l~~~~~~ 384 (411)
T TIGR03447 375 LAAVDNWAAA 384 (411)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 44
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.85 E-value=1.2e-19 Score=154.11 Aligned_cols=137 Identities=23% Similarity=0.367 Sum_probs=101.9
Q ss_pred CCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCCC-CEECCCCCCHHCCCCCCCCHHHHHCC-CCHHHHHHHHH
Q ss_conf 31002554442111245---544433117840000130378-26213453000012344333664113-67578878887
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITHG-FSVDENGEKMSKSKGNVVFPEEIISE-SGADVLRYWAV 661 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR~~~~ 661 (963)
.|++.+|.|.. |=+ -+..+.++++..||-+..+|+ |+. -+|+|||||+||++.+.+++++ |.++++||+++
T Consensus 215 ~DIHgGG~DL~---FPHHENEiAQsea~~g~~~~a~yW~H~g~l~-~~geKMSKSlGN~i~i~dl~~~g~~p~~~R~~lL 290 (384)
T PRK12418 215 FDIQGGGSDLI---FPHHEFSAAHAEAATGERRFARHYVHAGMIG-LDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALL 290 (384)
T ss_pred EEEECCCCCCC---CCCCHHHHHHHHHHHCCCHHHHHHHHHCEEE-ECCEECCCCCCCEEEHHHHHHCCCCHHHHHHHHH
T ss_conf 67846862565---8883549999998658974878886004266-8886745668871469999863898799999997
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 17876655443102567776400000110000012244445673101112788875436899999988987-65401226
Q gi|254780445|r 662 NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEV 740 (963)
Q Consensus 662 ~~~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a 740 (963)
++.|.+.++|+++.+.+....+.+++.+.+ . ..+ .. ...+.+++.+++ +.++...|
T Consensus 291 ~~hYR~~l~fs~~~l~~A~~~l~r~~~a~~----~---~~~--~~--------------~~~~~~~~~~al~DDlNTP~A 347 (384)
T PRK12418 291 AGHYRSDREWTDAVLAEAEARLARWRAATA----L---PAG--PD--------------AADVVARVREYLADDLDTPGA 347 (384)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----C---CCC--CC--------------HHHHHHHHHHHHHHCCCHHHH
T ss_conf 056799768899999999999999999871----6---678--86--------------688999999998742655899
Q ss_pred HHHHHHHHHH
Q ss_conf 6889987863
Q gi|254780445|r 741 VRQLTNFSNA 750 (963)
Q Consensus 741 ~~~i~~F~~~ 750 (963)
+..|.+++..
T Consensus 348 la~l~~l~~~ 357 (384)
T PRK12418 348 LAAVDGWATD 357 (384)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 45
>KOG2007 consensus
Probab=99.79 E-value=3.5e-17 Score=137.12 Aligned_cols=167 Identities=19% Similarity=0.261 Sum_probs=120.5
Q ss_pred CCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCC-CCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHHC
Q ss_conf 1002554442111245---54443311784000013037-8262134530000123443336641136757887888717
Q gi|254780445|r 588 DVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITH-GFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNS 663 (963)
Q Consensus 588 D~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~~ 663 (963)
|.+-+|.|. + |-+ =+.-+++.++..++=+.+.| |++- -+|.||||||+|+|+..+++++|.++.||++++++
T Consensus 260 DIH~GG~DL-~--FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~-i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~ 335 (586)
T KOG2007 260 DIHGGGIDL-A--FPHHENEIAQSEAAFDDSQWVNYFLHTGHLT-INGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLH 335 (586)
T ss_pred CEECCCCCC-C--CCCCCCHHHHHHHHHCCCCCCEEEEECCEEE-ECCCHHHHHHCCCEEHHHHHHHCCHHHHHHHHHHH
T ss_conf 201685043-3--7875208888888763875512578757366-51110433320414399999763989999999987
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 876655443102567776400000110000012244445673101112788875436899999988987-6540122668
Q gi|254780445|r 664 DYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DAFNFKEVVR 742 (963)
Q Consensus 664 ~~~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~~~f~~a~~ 742 (963)
.+.+.++++++.+..+..+...+.|.+.-+-..... ..+++.+...+.-++.++..+...|..++ ++++-..++.
T Consensus 336 ~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~----~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~ 411 (586)
T KOG2007 336 QWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRG----AKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVME 411 (586)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 756767843889999999999999999999999825----4202103858999998600378999999874245188999
Q ss_pred HHHHHHHHHCCCCHHHCCCHHH
Q ss_conf 8998786302400101020122
Q gi|254780445|r 743 QLTNFSNAELSSFYFDIRKDSL 764 (963)
Q Consensus 743 ~i~~F~~~dLS~~Yld~~Kdrl 764 (963)
.+.+.++ .+|-|+.....+.
T Consensus 412 ~~~~lvs--~~N~~i~~~~~~~ 431 (586)
T KOG2007 412 AIRELVS--QGNAYIRESGERP 431 (586)
T ss_pred HHHHHHH--HHHHHHHHHCCCC
T ss_conf 9999873--4338888731454
No 46
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.75 E-value=6.1e-18 Score=142.37 Aligned_cols=117 Identities=19% Similarity=0.319 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43102567776400000110000012244445673101112788875436899999988987654012266889987863
Q gi|254780445|r 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNA 750 (963)
Q Consensus 671 ~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~ 750 (963)
||++++++..+|++|+||.+... .+.........++...|+|+++++++++++|++++++|+|++|++.+|+|++
T Consensus 1 Wse~gIeg~~rFl~KlW~l~~~~----~~~~~~~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~N- 75 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTEL----AEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN- 75 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
T ss_conf 98006999999999999999988----8631345565446674499999999999999999985220599999999999-
Q ss_pred HCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 024001010201222789980899999999999999999997000448999999863
Q gi|254780445|r 751 ELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 751 dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l 807 (963)
.|+.. + .. . .....++.++++.+++|||||+||+|||+|+.|
T Consensus 76 ~l~~~-----~-----~~-~----~~~~~~~~~~l~~ll~lL~P~~PHiaEElW~~L 117 (117)
T cd07958 76 ALYKY-----K-----KK-D----AQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHHH-----H-----CC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99884-----6-----14-4----114999999999999998842479999998539
No 47
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.74 E-value=2.5e-18 Score=145.06 Aligned_cols=71 Identities=34% Similarity=0.534 Sum_probs=60.6
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHH
Q ss_conf 62822558897621577856687899876708982678888244420899999998765599833489999999999999
Q gi|254780445|r 59 HDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSA 138 (963)
Q Consensus 59 ~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a 138 (963)
...+|||||.||+||+++.++.|+++||. +|.++.|+|+||+|++..+++. ...|++++
T Consensus 3 ~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~~~~~~~idd~~~~~~~~a~~~----------------~~~~~~~~ 61 (142)
T cd00802 3 TRPGPYPTGPLHIGHARTALLNDVLARYG-----NVLFILGIDDTGLPIEDKAEKE----------------GKLPKEEV 61 (142)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCHHHHH----------------CCCCHHHH
T ss_conf 41488989964188999999999999981-----9989998657992001167884----------------44889999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780445|r 139 SAWVKIQSKEFQ 150 (963)
Q Consensus 139 ~~~i~~~~~~~~ 150 (963)
+++++.++++++
T Consensus 62 ~~~~~~~~~~~~ 73 (142)
T cd00802 62 EENIEEIKEDLK 73 (142)
T ss_pred HHHHHHHHHHCE
T ss_conf 999999998652
No 48
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.73 E-value=1.3e-17 Score=140.14 Aligned_cols=116 Identities=20% Similarity=0.348 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31025677764000001100000122444456731011127888754368999999889876540122668899878630
Q gi|254780445|r 672 GKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAE 751 (963)
Q Consensus 672 ~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~d 751 (963)
+++..+++...+.++++.+. ..+. ...+.++++.+|+|+++++++++++++++|++|+|++|++.++.+++++
T Consensus 2 ~~~~a~~~~~~L~~~~~~~~---e~~~----~~~~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~ 74 (117)
T cd07959 2 REEEANSAILRLERFYELAE---ELIE----TEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQND 74 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHH----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 18789999999999999999---9986----2577888977689999999999999999999878878999999999999
Q ss_pred CCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 24001010201222789980899999999999999999997000448999999863
Q gi|254780445|r 752 LSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 752 LS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lLaPi~P~~aEEiw~~l 807 (963)
+ +||+++++++ ....+|+.+++++++|||||+||+|||+|+.|
T Consensus 75 ~-~~Y~~~~~~~------------~~~~~l~~~l~~~~~lLaP~~PhiaEEiW~~l 117 (117)
T cd07959 75 L-DWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H-HHHHHHHCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9-9999984554------------14999999999999998473348699998639
No 49
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.65 E-value=4.1e-16 Score=129.71 Aligned_cols=161 Identities=22% Similarity=0.280 Sum_probs=118.4
Q ss_pred CCCCCCCCCCCCCCHHHHHH---HHHHHHCCC-CCEEEEECCC-CCEECCCCCCHHCCCCCCCCHHHHHC-CCCHHHHHH
Q ss_conf 44310025544421112455---444331178-4000013037-82621345300001234433366411-367578878
Q gi|254780445|r 585 WPADVYLEGSDQHRGWFQHS---LLESCATRG-STPFTSLITH-GFSVDENGEKMSKSKGNVVFPEEIIS-ESGADVLRY 658 (963)
Q Consensus 585 ~PaD~~~eG~Dq~RgWF~s~---ll~~~~~~~-~~Pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~-~yGaD~lR~ 658 (963)
.+.|++.+|.|-. |=+. +..|.+++| +.+ -+.++| |||. -+|+||||||||++...++++ .|-+-+|||
T Consensus 365 ~~~DIH~GG~DL~---FPHHENE~Aqs~a~~gn~~~-~~yW~H~G~~~-id~eKMSKSLgNF~~v~D~L~q~~d~~~lR~ 439 (660)
T TIGR00435 365 DQIDIHGGGVDLI---FPHHENEIAQSEALFGNKQL-AKYWLHNGFLM-IDNEKMSKSLGNFITVRDVLKQNYDPEVLRY 439 (660)
T ss_pred CCCEECCCCCCCC---CCCCHHHHHHHHHHHCCCCE-EEEEEECCEEE-ECCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 5430134887788---87877899999987289856-89998517789-7672165155568888868742768999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHH---HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 8871787665544310256777---6400000110000012244445673101112788875436899999988987-65
Q gi|254780445|r 659 WAVNSDYHDDQRLGKNIIQTNI---DTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAY-DA 734 (963)
Q Consensus 659 ~~~~~~~~~d~~~~~~~l~~~~---~~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~-e~ 734 (963)
+++++-|..-++|+++.|..+. +.+.+|+++++.+...+.................+-....+.+...+|..+| ++
T Consensus 440 ~~l~~HYr~pLdf~e~~l~~aksfe~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Eseskvhsa~~dD 519 (660)
T TIGR00435 440 LLLSVHYRSPLDFSEELLEAAKSFENALERLYKALRNLDTDLAYSKEFGENKDPKNVDEKEFEAAFEESESKVHSAMDDD 519 (660)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98765531456747889999988999999999999987531034222342435664225657866432035778887505
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 4012266889987863
Q gi|254780445|r 735 FNFKEVVRQLTNFSNA 750 (963)
Q Consensus 735 ~~f~~a~~~i~~F~~~ 750 (963)
|++..|++.|.+++..
T Consensus 520 lN~a~Al~vL~el~~~ 535 (660)
T TIGR00435 520 LNTANALAVLFELAKS 535 (660)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 7806899999999998
No 50
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.21 E-value=7e-12 Score=100.39 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCHHHHH---HHHHHHHCCCCCEEEEECCCC-CEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 431002554442111245---544433117840000130378-2621345300001234433366411367578878887
Q gi|254780445|r 586 PADVYLEGSDQHRGWFQH---SLLESCATRGSTPFTSLITHG-FSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV 661 (963)
Q Consensus 586 PaD~~~eG~Dq~RgWF~s---~ll~~~~~~~~~Pfk~v~~hG-~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~ 661 (963)
+.|+..+|.|.. |=+ -+..+.+++++ ||-+..+|+ |+. -+|+|||||+||++...+++++|+++++||+++
T Consensus 128 ~~DIH~GG~DL~---FPHHeNE~AQs~a~~~~-~~a~~W~H~g~l~-~~g~KMSKSlgN~~~i~dll~~~~~~~~R~~ll 202 (213)
T cd00672 128 TFDIHGGGVDLI---FPHHENEIAQSEAAFGK-PFARYWLHTGHLT-IDGEKMSKSLGNFITVRDALKKYDPEVLRLALL 202 (213)
T ss_pred CEEEECCCCCCC---CCCCCCHHHHHHHHHCC-CCCCEEEEHHHHH-HCCCEECCCCCCEEEHHHHHHCCCHHHHHHHHH
T ss_conf 625634763565---89970499998886589-9601000345787-275640345787526999984399999999998
Q ss_pred HCCCCCCCCCC
Q ss_conf 17876655443
Q gi|254780445|r 662 NSDYHDDQRLG 672 (963)
Q Consensus 662 ~~~~~~d~~~~ 672 (963)
++.|.+.++||
T Consensus 203 s~hYR~~l~fs 213 (213)
T cd00672 203 SSHYRSPLDYS 213 (213)
T ss_pred HCCCCCCCCCC
T ss_conf 27378987899
No 51
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.20 E-value=2e-10 Score=90.29 Aligned_cols=101 Identities=22% Similarity=0.331 Sum_probs=77.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHH
Q ss_conf 56731011127888754368999999889876540122668899878630240010102012227899808999999999
Q gi|254780445|r 702 GNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVI 781 (963)
Q Consensus 702 ~~~~~~~~l~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L 781 (963)
+..+....+...|+++++++.++++++.++|++++|++|++.++.++. .+|.|++..++ |.-.++. .+..++++|
T Consensus 26 ~~i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~--~~N~y~~~~~P--W~l~K~~-~~~~~~~vl 100 (129)
T cd07957 26 GVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELAR--AANKYIDETAP--WKLAKEE-DPERLATVL 100 (129)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCC--HHHHHCC-HHHHHHHHH
T ss_conf 979998777641399999999999999999985249999999999999--99999996587--9888230-299999999
Q ss_pred H---HHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 9---9999999997000448999999863
Q gi|254780445|r 782 R---ILCRHLIIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 782 ~---~il~~l~~lLaPi~P~~aEEiw~~l 807 (963)
+ ++++.+..+|+||||++|+++|..|
T Consensus 101 ~~~l~~~~~l~ilL~P~mP~~s~~i~~~L 129 (129)
T cd07957 101 YVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf 99999999999999757018999999719
No 52
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.13 E-value=6.6e-10 Score=86.69 Aligned_cols=195 Identities=19% Similarity=0.314 Sum_probs=114.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEECCC---CCEECCCCCCHHCCCCCCCCHHHHHCC--------------
Q ss_conf 00255444211124554443311-784000013037---826213453000012344333664113--------------
Q gi|254780445|r 589 VYLEGSDQHRGWFQHSLLESCAT-RGSTPFTSLITH---GFSVDENGEKMSKSKGNVVFPEEIISE-------------- 650 (963)
Q Consensus 589 ~~~eG~Dq~RgWF~s~ll~~~~~-~~~~Pfk~v~~h---G~vld~~G~KMSKS~GNvi~p~~ii~~-------------- 650 (963)
+|+-|.||+ +-|..+...--++ +....+ .++.| |+|.+.+|.|||+.+||+|...++++.
T Consensus 331 I~V~g~dq~-~hf~~l~~~l~~lG~~~~~~-~~l~h~~~~lv~~~~~~kMStR~G~~v~L~dlldea~~~a~~~~~~~~e 408 (570)
T PRK01611 331 IYVVGADHH-GHFKRLKAALKALGYDPEKL-EVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVERARELVEESEE 408 (570)
T ss_pred EEEECCCHH-HHHHHHHHHHHHCCCCCCCC-EEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999457588-89999999999869996334-4799999875436867644246787458999999999999987633776
Q ss_pred --------CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH--------HHHHHCCCCCCCCCCCCCCCCCCCCHHHH-HHH
Q ss_conf --------6757887888717876655443102567776--------40000011000001224444567310111-278
Q gi|254780445|r 651 --------SGADVLRYWAVNSDYHDDQRLGKNIIQTNID--------TYRKLRNTIRWMLGMLAHDTGNEPSLADM-PAL 713 (963)
Q Consensus 651 --------yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~--------~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l-~~~ 713 (963)
-|.||+||++++.++..++.|+.+.+..... .+-|+...+|=. +. .... .......+ .+.
T Consensus 409 ~~~~ia~~Vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~~YiQYa~AR~~SIlrK~-~~-~~~~-~~~~~~~l~~~~ 485 (570)
T PRK01611 409 EKEEIAKAVGIDAVRYFDLSRSRDSDYDFDLDLALSFEGNNPPYVQYAHARICSILRKA-AE-EGLA-AAADLSLLTEEE 485 (570)
T ss_pred HHHHHHHHHCHHHHHHHHHCCCCCCCCEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HC-CCCC-CCCCCCCCCCHH
T ss_conf 78899976341040264440688888222689986323898257889999999999863-12-3454-434333469989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCH---HHHHHHHHHHHHHHHHHH
Q ss_conf 88754368999999889876540122668899878630240010102012227899808---999999999999999999
Q gi|254780445|r 714 EQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSL---KRLSSIAVIRILCRHLII 790 (963)
Q Consensus 714 DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~---~R~s~~~~L~~il~~l~~ 790 (963)
++-++.+|..+-.-+..+.++++.|..+.-+++.+. .+++||=. .+ .+ ...+.. .|.....+...+|..-+.
T Consensus 486 E~~Li~~l~~fp~vv~~a~~~~~Ph~l~~YL~~La~-~Fn~fY~~-~~-vl--~~~~~~~~~~RL~L~~a~~~vL~~gL~ 560 (570)
T PRK01611 486 ELELIKKLAEFPEVVESAAEELEPHRIANYLYELAG-AFHSFYNA-CP-VL--KEEEEEERNARLALVKATAQVLKNGLD 560 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHC-CC-CC--CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998879999999996881899999999999-99999851-98-35--899989999999999999999999864
Q ss_pred HHC
Q ss_conf 970
Q gi|254780445|r 791 WIA 793 (963)
Q Consensus 791 lLa 793 (963)
+|.
T Consensus 561 LLG 563 (570)
T PRK01611 561 LLG 563 (570)
T ss_pred CCC
T ss_conf 039
No 53
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.03 E-value=3.8e-09 Score=81.48 Aligned_cols=195 Identities=17% Similarity=0.225 Sum_probs=126.6
Q ss_pred CCCCCCCCCCHHHHHH--HHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHC-----------------
Q ss_conf 0025544421112455--444331178400001303782621345300001234433366411-----------------
Q gi|254780445|r 589 VYLEGSDQHRGWFQHS--LLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIIS----------------- 649 (963)
Q Consensus 589 ~~~eG~Dq~RgWF~s~--ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~----------------- 649 (963)
+|+-|+||+ +-+.++ .+-..+++.+.|==.++.+|||...+|+|||-..||+|+.+++++
T Consensus 353 i~V~gsdh~-~h~~q~~~~~e~LG~~~~~~~L~~~~f~~v~~~~GKkmkTR~G~~i~ld~ll~e~~~RA~~~~~~~~~~~ 431 (600)
T TIGR00456 353 IYVWGSDHK-LHIAQVFAILEKLGYLSKKKELEHLEFGMVPLGSGKKMKTRRGNVISLDNLLDEASKRAGNVITKRNTDL 431 (600)
T ss_pred EEEEECCHH-HHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 987405188-8999999999971653788616899876432578885434556602234468999999999996110135
Q ss_pred -----------CCCHHHHHHHHHHCCCCCCCCCCCH-HHHHHHH--------HHHHHCCCCCCCCCCCCCCCCC---CCC
Q ss_conf -----------3675788788871787665544310-2567776--------4000001100000122444456---731
Q gi|254780445|r 650 -----------ESGADVLRYWAVNSDYHDDQRLGKN-IIQTNID--------TYRKLRNTIRWMLGMLAHDTGN---EPS 706 (963)
Q Consensus 650 -----------~yGaD~lR~~~~~~~~~~d~~~~~~-~l~~~~~--------~~~kl~Nt~rf~l~~l~~~~~~---~~~ 706 (963)
.-|.||+||++++.....++.|+.+ ...+-.. .+-|++-.+| +-+..++. ..+
T Consensus 432 ~~~e~~e~~a~~vG~gAvry~~l~~~~~~~~~Fd~d~~~L~f~~n~~pY~QYAhaR~~Silr----~~~~~~~~~~~~~~ 507 (600)
T TIGR00456 432 EQDEAEEKVADAVGIGAVRYADLSKNRETHYVFDWDTAMLSFEGNTAPYIQYAHARICSILR----KKAEIDGEKLIADD 507 (600)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHCCCCCCCCHHHHHHHHHHHHHH----HHCCCCHHHHHHHH
T ss_conf 22203789999973679999999727898815501201111578874325888999999876----31023313455320
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCC---CCHHHHHHHHHHH
Q ss_conf 0111-27888754368999999889876540122668899878630240010102012227899---8089999999999
Q gi|254780445|r 707 LADM-PALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSP---SSLKRLSSIAVIR 782 (963)
Q Consensus 707 ~~~l-~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~---~s~~R~s~~~~L~ 782 (963)
...+ .+-++-++..|.++-.-+.++.+..+.|..++-+++.+ ..||+||= -+|= .+.. -+..|........
T Consensus 508 ~~~~~~~~E~~L~~~L~~fp~~~~~~~~~~~p~~l~~Yly~LA-~~F~sfY~-~~~v---~~~~~~~~~~~RL~L~~~~~ 582 (600)
T TIGR00456 508 FLLLKEEKEKELLKLLLQFPEVIEEAAEEREPHVLTNYLYELA-KLFSSFYK-ACPV---LDAENEELAKARLALLKATR 582 (600)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHH-CCCC---CCCCCHHHHHHHHHHHHHHH
T ss_conf 0036888899999998564899999998547188899999997-76423664-1778---89862668999999999999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999970
Q gi|254780445|r 783 ILCRHLIIWIA 793 (963)
Q Consensus 783 ~il~~l~~lLa 793 (963)
.+|...+.||.
T Consensus 583 ~~L~n~L~LLG 593 (600)
T TIGR00456 583 QTLKNGLELLG 593 (600)
T ss_pred HHHHHHHHHHC
T ss_conf 99999887608
No 54
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.01 E-value=7e-09 Score=79.60 Aligned_cols=193 Identities=16% Similarity=0.239 Sum_probs=112.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCC-CE-EEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCC---------------
Q ss_conf 100255444211124554443311784-00-0013037826213453000012344333664113---------------
Q gi|254780445|r 588 DVYLEGSDQHRGWFQHSLLESCATRGS-TP-FTSLITHGFSVDENGEKMSKSKGNVVFPEEIISE--------------- 650 (963)
Q Consensus 588 D~~~eG~Dq~RgWF~s~ll~~~~~~~~-~P-fk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~--------------- 650 (963)
-+++-|.||| |-|..+....-++ |. .+ --..+..|+|+ .+|+||||.+||+|...++++.
T Consensus 327 ~I~V~gadh~-~~~~rv~a~l~~l-g~~~~~~~~hv~~~~v~-~~g~kMStR~G~~v~l~dll~e~~~~a~~~~~~r~~~ 403 (562)
T PRK12451 327 ALYVVGPEQS-LHFNQFFTVLKKL-GYTWVDGMEHVPFGFIL-KDGKKMSTRKGRVILLEEVLEEAIELAKQNIEEKNPN 403 (562)
T ss_pred EEEEECCCHH-HHHHHHHHHHHHC-CCCCCCCEEEEEEEEEE-CCCCCEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999567476-7999999999974-99754550689889987-4886302057875689999999999999998752777
Q ss_pred ----------CCHHHHHHHHHHCCCCCCCCCCCH-HHHHHHH-------HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ----------675788788871787665544310-2567776-------4000001100000122444456731011127
Q gi|254780445|r 651 ----------SGADVLRYWAVNSDYHDDQRLGKN-IIQTNID-------TYRKLRNTIRWMLGMLAHDTGNEPSLADMPA 712 (963)
Q Consensus 651 ----------yGaD~lR~~~~~~~~~~d~~~~~~-~l~~~~~-------~~~kl~Nt~rf~l~~l~~~~~~~~~~~~l~~ 712 (963)
-|.|++||++++.....++.|+.+ .++.-.+ .+-|+...+|= .+ .........-...
T Consensus 404 ~~~~~~ia~~VG~~Airy~~L~~~~~~~~~FD~d~~~~~~~~~~PYiQYAhARi~SIlrk--~~---~~~~~~~~~l~~~ 478 (562)
T PRK12451 404 LKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRK--ES---VEFETCTFALKDD 478 (562)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH--CC---CCCCCCCCCCCCH
T ss_conf 132899999853113013444316787776789999742578873699999999999974--45---7755433446997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88875436899999988987654012266889987863024001010201222789980899999999999999999997
Q gi|254780445|r 713 LEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWI 792 (963)
Q Consensus 713 ~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~~R~s~~~~L~~il~~l~~lL 792 (963)
.++-++.+|..+-..+..+.++++.|..+.-+++++. .+.+||=. +| .+ .+......|.....+...++..-+.+|
T Consensus 479 ~e~~Li~~L~~fp~vv~~aa~~~~Ph~l~~Yl~~LA~-~Fh~fY~~-~~-Vl-~~~~~~~aRL~L~~a~~~vl~ngL~LL 554 (562)
T PRK12451 479 HSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQ-SFNKYYGN-VR-IL-EESAEKDSRLALVYAVTVVLKEGLRLL 554 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHCC-CC-CC-CCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999889999999984993799999999999-99999806-87-78-995658999999999999999974322
No 55
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.4e-09 Score=79.90 Aligned_cols=194 Identities=21% Similarity=0.328 Sum_probs=115.6
Q ss_pred CCCCCCCCCCHHHHHHHH-HHHHCCCCCEEEEECCC--CCEECCCCCCHHCCCCCCCCHHHHHCCCC-------------
Q ss_conf 002554442111245544-43311784000013037--82621345300001234433366411367-------------
Q gi|254780445|r 589 VYLEGSDQHRGWFQHSLL-ESCATRGSTPFTSLITH--GFSVDENGEKMSKSKGNVVFPEEIISESG------------- 652 (963)
Q Consensus 589 ~~~eG~Dq~RgWF~s~ll-~~~~~~~~~Pfk~v~~h--G~vld~~G~KMSKS~GNvi~p~~ii~~yG------------- 652 (963)
+|+-|.||+ +-|..+-. +..+-++..+ ..++.+ |+|.+.+|.||||..||+|...++++.-|
T Consensus 338 IyV~gadq~-~~~~ql~~~l~~~g~~~~~-~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~ 415 (577)
T COG0018 338 IYVLGADQH-GHFKQLKAVLELLGYGPDK-EVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEK 415 (577)
T ss_pred EEEECCCCH-HHHHHHHHHHHHHCCCCCC-CEEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999678624-4999999999984699865-61899977525778776342248865789999999988766676543211
Q ss_pred ---------HHHHHHHHHHCCCCCCCCCCCHHHHHHHH--------HHHHHCCCCCCCCCCCCCCCCCCCCH--HHHHHH
Q ss_conf ---------57887888717876655443102567776--------40000011000001224444567310--111278
Q gi|254780445|r 653 ---------ADVLRYWAVNSDYHDDQRLGKNIIQTNID--------TYRKLRNTIRWMLGMLAHDTGNEPSL--ADMPAL 713 (963)
Q Consensus 653 ---------aD~lR~~~~~~~~~~d~~~~~~~l~~~~~--------~~~kl~Nt~rf~l~~l~~~~~~~~~~--~~l~~~ 713 (963)
.||+||++++.....++.|+.+.+..-.. .+-++...+|=. .......... ..+...
T Consensus 416 ~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka----~e~~~~~~~~~~~~l~~~ 491 (577)
T COG0018 416 NEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKA----GEDELDLSTEADALLTEL 491 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCHHCCCH
T ss_conf 5777777524067899886289999475399997445997215999999999999854----443455332221010682
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCC---CHHHHHHHHHHHHHHHHHH
Q ss_conf -887543689999998898765401226688998786302400101020122278998---0899999999999999999
Q gi|254780445|r 714 -EQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPS---SLKRLSSIAVIRILCRHLI 789 (963)
Q Consensus 714 -DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~---s~~R~s~~~~L~~il~~l~ 789 (963)
++-++.+|.++-.-+.++.+.++.|..+.-+++.. ..+++||=. ++ .- +..+ ...|.....+...+|..-+
T Consensus 492 ~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~-~~--Vl-~~~~~~~~~aRL~L~~a~~~vL~ngL 566 (577)
T COG0018 492 EERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNA-CP--VL-GAENEELRAARLALVKATRQVLKNGL 566 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHH-CC--CC-CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999984999999998569559999999999-999999850-87--77-89957899999999999999999778
Q ss_pred HHHC
Q ss_conf 9970
Q gi|254780445|r 790 IWIA 793 (963)
Q Consensus 790 ~lLa 793 (963)
.+|.
T Consensus 567 ~LLG 570 (577)
T COG0018 567 DLLG 570 (577)
T ss_pred HHCC
T ss_conf 7609
No 56
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=7e-08 Score=72.69 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=83.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH----------------------------HHHH
Q ss_conf 225588976215778566878998767089826788882444208999----------------------------9999
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEW----------------------------KVEN 113 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~----------------------------~vek 113 (963)
-|+|+|+||+||+||-+|.|+++|--+..||+|....=.+-.|--+.+ ++-+
T Consensus 125 SaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~ 204 (577)
T COG0018 125 SANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAK 204 (577)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 79999985233235368899999999983997667866785799999999999995541013777720688999999999
Q ss_pred HHHHCCC---C--H-----HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHH-HHHHHHHHHHHHHH
Q ss_conf 8765599---8--3-----3489999999999999999999999999706077636981157767-98999999999998
Q gi|254780445|r 114 EYLAKGK---K--K-----DDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRE-SEAQIASELLKIAE 182 (963)
Q Consensus 114 ~l~~~~~---~--~-----~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~-y~~~~~~~F~~l~~ 182 (963)
.+..... . + -+.+.++. ..-|.++......+++.+.|||+.+|= |...... |...+..+...|-+
T Consensus 205 ~~~~~~~~~~~~~~~~~~k~e~~d~~~-~lw~~~v~~~l~~~k~~l~~l~V~fD~---~~~E~e~~~~~~~~~vv~~L~~ 280 (577)
T COG0018 205 DLEEDPGNDEEEAREEVEKLESGDEEA-ELWRKFVDLSLEGIKETLDRLGVKFDV---YDSEGESFYNGKVEKVVEDLEE 280 (577)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHCCCCEE---EECCCHHHHCCCHHHHHHHHHH
T ss_conf 997484612678899999886477578-999999999999999999992953001---3234265526649999999986
Q ss_pred CCCEEC--CCCEEEECC
Q ss_conf 796110--343022057
Q gi|254780445|r 183 SDQIYR--GIKPIMWSI 197 (963)
Q Consensus 183 kGliyr--~~~pV~w~p 197 (963)
+|++|. |..+|.|.-
T Consensus 281 ~~~~~e~~GA~~vdl~~ 297 (577)
T COG0018 281 KGLLYEDDGALVVDLLK 297 (577)
T ss_pred CCCEEEECCEEEEEHHH
T ss_conf 69776009958986432
No 57
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.79 E-value=7.4e-08 Score=72.51 Aligned_cols=126 Identities=9% Similarity=-0.001 Sum_probs=78.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH--HHHHH-----------------------
Q ss_conf 22558897621577856687899876708982678888244420899999--99876-----------------------
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKV--ENEYL----------------------- 116 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~v--ek~l~----------------------- 116 (963)
=|+|+|+||+||+||-++.|.++|--+..||+|....=-.-.|..|-.-+ .+..+
T Consensus 121 SaNPtgpLHVGH~R~aiiGdsLariL~~~G~~V~reyYinD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~ 200 (562)
T PRK12451 121 SPNIAKPFSMGHLRSTMIGNSLKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELFKLYVQFHEE 200 (562)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 89999886242246279999999999986985999997477308999999999985440112467578999999999986
Q ss_pred -HCCCCHHH----------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCC
Q ss_conf -55998334----------8999999999999999999999999970607763698115776798999999999998796
Q gi|254780445|r 117 -AKGKKKDD----------IPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQ 185 (963)
Q Consensus 117 -~~~~~~~~----------~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGl 185 (963)
..+....+ -+..+..+.-+.+....++.+++.+++||+.+|- +..+..|...+..++..|.++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~l~~~~~~l~~l~v~fD~----~~~Es~~~~~~~~~i~~L~~~g~ 276 (562)
T PRK12451 201 VKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTN----FQGEAFYNNLMEDFIGILEEHDL 276 (562)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE----EECHHHHHHHHHHHHHHHHHCCC
T ss_conf 50480068999999998766899999999999999999999999992972014----52324451247899999997797
Q ss_pred EECCCC
Q ss_conf 110343
Q gi|254780445|r 186 IYRGIK 191 (963)
Q Consensus 186 iyr~~~ 191 (963)
+|++.-
T Consensus 277 ~~e~dG 282 (562)
T PRK12451 277 LEESEG 282 (562)
T ss_pred EEECCC
T ss_conf 894799
No 58
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.77 E-value=1.1e-08 Score=78.36 Aligned_cols=103 Identities=22% Similarity=0.402 Sum_probs=69.6
Q ss_pred HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHCC
Q ss_conf 05688884899628225588976215778566878998767089826788882444--------2089999999876559
Q gi|254780445|r 48 ESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCH--------GLPIEWKVENEYLAKG 119 (963)
Q Consensus 48 ~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~h--------GLPiE~~vek~l~~~~ 119 (963)
+..+++..+++-.| =.|||.+|||+.+--+..|++.|--+-+|+.|-++..||.. ++| |. .++-++..
T Consensus 13 ~r~~~k~~~v~~tG-~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD~D~lRKVp~~lp-e~-~~~ylg~P- 88 (354)
T cd00674 13 EERKGKEKYVVASG-ISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDDYDPLRKVPDNVP-ES-LEQYIGMP- 88 (354)
T ss_pred HHCCCCCCEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHCCCCCCCC-HH-HHHHCCCC-
T ss_conf 86278985899478-7999886320550178899999999975996799998405551003755787-99-99862996-
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
Q ss_conf 983348999999999999999999999999970607763
Q gi|254780445|r 120 KKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDF 158 (963)
Q Consensus 120 ~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw 158 (963)
-..++ ..| ..|..|+++|.....+.+.++|+-..+
T Consensus 89 --L~~IP-dP~-G~~~SyaeHf~~~f~~~L~~~gi~~e~ 123 (354)
T cd00674 89 --LSSVP-DPF-GCHESYAEHFNAPFEESLDRFGIEVEF 123 (354)
T ss_pred --CEECC-CCC-CCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf --30068-977-775459999999999999984982899
No 59
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.76 E-value=3.5e-08 Score=74.73 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=84.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC-------------------CCCCCCC--------CCHHH-H-HHHH
Q ss_conf 2558897621577856687899876708982678-------------------8882444--------20899-9-9999
Q gi|254780445|r 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACF-------------------VPGWDCH--------GLPIE-W-KVEN 113 (963)
Q Consensus 63 Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~-------------------~~GwD~h--------GLPiE-~-~vek 113 (963)
|+|||+||+||+||-+|.|.++|--++.||+|.. .+|-+.- ++--+ . ++-|
T Consensus 127 aNp~gplH~GHlR~aiIGD~L~r~l~~~G~~V~r~yyVND~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~y~~~~k 206 (600)
T TIGR00456 127 ANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQIGLLVLGVEKFGNEKETAVKKPDHGLEGFDYVEINK 206 (600)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 88897611000025777889999998759707985200542899999999999851213202668742012358889887
Q ss_pred HHHHCCC-----CHH----------HCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCEEEE---CCCCEECCCHHHHHHH
Q ss_conf 8765599-----833----------4899--999999999999999999999997060776---3698115776798999
Q gi|254780445|r 114 EYLAKGK-----KKD----------DIPV--NEFRQACRDSASAWVKIQSKEFQRLGIVGD---FENPYTTMTRESEAQI 173 (963)
Q Consensus 114 ~l~~~~~-----~~~----------~~~~--~~~~~~c~~~a~~~i~~~~~~~~rlG~~~D---w~~~y~T~dp~y~~~~ 173 (963)
.+..... ... +-+- +++++.=+..+...+..+++.+++|++.+| |+-++. +....
T Consensus 207 ~~~e~~~~~~~~s~~~~~~~~~~~~e~gdnNe~~~~~w~~~~~~~l~~~k~tl~~lni~~D~~~~E~E~~-----~~~~~ 281 (600)
T TIGR00456 207 RLEENEEPINKQSLEEEARELFVKLESGDNNEKTIKLWKRLVEYALEGIKETLKRLNIHFDEFVWEGESV-----KNGKV 281 (600)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEE-----ECCCH
T ss_conf 8861777653335457899999974324442899999999999999999999986296500588540457-----74860
Q ss_pred HHHHHHHH-HCCCEECC-CCEEEECCCCC
Q ss_conf 99999999-87961103-43022057435
Q gi|254780445|r 174 ASELLKIA-ESDQIYRG-IKPIMWSIAEQ 200 (963)
Q Consensus 174 ~~~F~~l~-~kGliyr~-~~pV~w~p~~~ 200 (963)
-.++.+|. ++||+++. -..+.-.+..+
T Consensus 282 ~~v~e~L~k~~gl~~ed~gA~~~~L~~f~ 310 (600)
T TIGR00456 282 PKVLEDLKKEKGLVVEDDGALWLDLTEFG 310 (600)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEECCCCC
T ss_conf 78999863103780674734899757766
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=98.76 E-value=1.6e-07 Score=70.21 Aligned_cols=130 Identities=13% Similarity=0.182 Sum_probs=78.4
Q ss_pred EEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--H-----------------HHH
Q ss_conf 9962-8225588976215778566878998767089826788882444208999999--9-----------------876
Q gi|254780445|r 57 TLHD-GPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVE--N-----------------EYL 116 (963)
Q Consensus 57 ~l~d-gPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~ve--k-----------------~l~ 116 (963)
++.| .=|+|+|+||+||+||-++.|.++|-.+..||+|....=-.-.|..+..-+. + +..
T Consensus 120 v~VEf~S~Np~kplHvGH~R~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~l~~~Y~~~~ 199 (570)
T PRK01611 120 VVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLAASLELEEAAAKGLSDLERRYREAK 199 (570)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99984489999986233588789999999999983990799999787427999999999996048887066799999985
Q ss_pred HC-CCC-----H------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHH--HHHHHHHHHHH
Q ss_conf 55-998-----3------3489999999999999999999999999706077636981157767989--99999999998
Q gi|254780445|r 117 AK-GKK-----K------DDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEA--QIASELLKIAE 182 (963)
Q Consensus 117 ~~-~~~-----~------~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~--~~~~~F~~l~~ 182 (963)
.. ... + .+-+.++.+..-+......++.+++.+++||+.+|- +....+++. .+-.++.+|-+
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~l~~l~I~fD~----~~~Es~~~~~~~i~~v~~~L~~ 275 (570)
T PRK01611 200 KEPDEDPEEYAGEYIVKLAAPGDEELEELWRKAVDISLDEIKEDLDRLGVKFDV----FFSESSLYNDGKVEEVVEDLKE 275 (570)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCHHHHHHCCCHHHHHHHHHH
T ss_conf 034658545578999998717988899999999999999999999974876442----1266889857744999999986
Q ss_pred CCCEECCC
Q ss_conf 79611034
Q gi|254780445|r 183 SDQIYRGI 190 (963)
Q Consensus 183 kGliyr~~ 190 (963)
+|++|+..
T Consensus 276 ~~~~~e~d 283 (570)
T PRK01611 276 KGLLYESD 283 (570)
T ss_pred CCCEEECC
T ss_conf 79589318
No 61
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=98.74 E-value=4.7e-08 Score=73.87 Aligned_cols=82 Identities=32% Similarity=0.544 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCEE-EE--ECCCCCEECCCCCCHHCCCCCCCCHHHHHCC---------------
Q ss_conf 00255444211124554443311784000-01--3037826213453000012344333664113---------------
Q gi|254780445|r 589 VYLEGSDQHRGWFQHSLLESCATRGSTPF-TS--LITHGFSVDENGEKMSKSKGNVVFPEEIISE--------------- 650 (963)
Q Consensus 589 ~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pf-k~--v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~--------------- 650 (963)
+|+-|.||+ +-|..+. ......|..|- .. .+.+|+|+.++|+|||+.+||+|...+++++
T Consensus 234 I~V~g~dq~-~h~~~l~-~~l~~lg~~~~~~~~~h~~~g~v~~~dgkkMStR~G~~v~l~dLl~ea~~~a~~~~~~~~~~ 311 (345)
T pfam00750 234 IYVLGADQH-GHIQRLF-AAAAALGYDPESVEVLHIGFGVVLGKDGKRMSTRAGNVVTLDDLLDEALERAMDIKEKNRDL 311 (345)
T ss_pred EEECCCCHH-HHHHHHH-HHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 886474275-6999999-99998599942361789999738768996167788775789999999999999999736689
Q ss_pred -----------CCHHHHHHHHHHCCCCCCCCCC
Q ss_conf -----------6757887888717876655443
Q gi|254780445|r 651 -----------SGADVLRYWAVNSDYHDDQRLG 672 (963)
Q Consensus 651 -----------yGaD~lR~~~~~~~~~~d~~~~ 672 (963)
-|.+|+||++++.++..++.|+
T Consensus 312 ~~~~~~~ia~~Vgi~Airy~~L~~~~~k~i~FD 344 (345)
T pfam00750 312 TADELEAVATAIGVDAARYADLSSNRDTDYIFD 344 (345)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 877899999877076765999865889898358
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.68 E-value=4e-07 Score=67.45 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=72.4
Q ss_pred HHHHHHCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCC--------C
Q ss_conf 999986476144540568888489962822558897621577856687899876708-9826788882444--------2
Q gi|254780445|r 34 ITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMR-NFNACFVPGWDCH--------G 104 (963)
Q Consensus 34 ~~~W~~~~~f~~~~~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~-G~~Vl~~~GwD~h--------G 104 (963)
.+.|.+.-+ ++..+..++++.++|-.| =.|||.+|+|+.+--+..|+++|--|-+ |+.|-++..||.. +
T Consensus 10 ~~~W~~~~A-~~l~~r~~~~~~vv~~tG-~~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~~~~i~~~Dd~D~lRkvp~~ 87 (513)
T PRK00750 10 SKAWPFEEA-RKILKRLGKKGEVLFETG-YGPSGLPHIGTFGEVARTTMVRRALRDLTGIKTRLIYFSDDMDGLRKVPDN 87 (513)
T ss_pred CCCCCHHHH-HHHHHHCCCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 168829999-999986578873999368-689988623045226669999999998459966899985177654346889
Q ss_pred CHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
Q ss_conf 089999999876559983348999999999999999999999999970607763
Q gi|254780445|r 105 LPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDF 158 (963)
Q Consensus 105 LPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw 158 (963)
+|-.-..++-++.. -..+ |+.| ..|..|+++|....++.+.++|+-+++
T Consensus 88 ~p~~e~~~~~lg~P---l~~i-PdP~-g~~~Sya~h~~~~~~~~l~~~gi~~e~ 136 (513)
T PRK00750 88 VPNQEMLAEHLGKP---LTSV-PDPF-GTHESYAEHNNARLREFLDKFGFEYEF 136 (513)
T ss_pred CCCHHHHHHHCCCC---CCCC-CCCC-CCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99849999874996---6407-9988-875769999999999999983983399
No 63
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=98.66 E-value=4.2e-08 Score=74.26 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=71.9
Q ss_pred HCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--------CCHHHHHHHHHHHHCC
Q ss_conf 05688884899628225588976215778566878998767089826788882444--------2089999999876559
Q gi|254780445|r 48 ESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCH--------GLPIEWKVENEYLAKG 119 (963)
Q Consensus 48 ~~~~~~~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~h--------GLPiE~~vek~l~~~~ 119 (963)
+.+..+.++++-.| =.|||.+|||+.+--+..|++.|--|.+|++|-++..||.. +||-+-..++-++..-
T Consensus 13 ~~~~~~~~~v~~tG-~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl 91 (355)
T pfam01921 13 KERFKKGEILVETG-IGPSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPL 91 (355)
T ss_pred HHCCCCCCEEEECC-CCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 96067985899526-68998864215601799999999999749876999982156510137889999899987369752
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
Q ss_conf 983348999999999999999999999999970607763
Q gi|254780445|r 120 KKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDF 158 (963)
Q Consensus 120 ~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw 158 (963)
..+ |..| ..|..||+.|.....+.+.++|+-..+
T Consensus 92 ---~~I-PdP~-g~~~Sya~h~~~~~~~~L~~~gi~~ef 125 (355)
T pfam01921 92 ---TRI-PDPF-GCHESYAEHFNAPFLEFLDRFGIEYEF 125 (355)
T ss_pred ---EEC-CCCC-CCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf ---134-7988-874559999999999999983982899
No 64
>cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.57 E-value=4e-07 Score=67.43 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=40.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 25588976215778566878998767089826788882444208999
Q gi|254780445|r 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEW 109 (963)
Q Consensus 63 Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~ 109 (963)
|+|+|+|||||+||-+|.|.++|-.+-.||+|...-=..-.|.++-.
T Consensus 9 ~Np~kplHvGHlR~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~ 55 (267)
T cd00671 9 ANPTGPLHVGHLRNAIIGDSLARILEFAGYDVTREYYINDWGRQIGL 55 (267)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHH
T ss_conf 99999850310363899999999999879958898850786099999
No 65
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=98.36 E-value=4.4e-07 Score=67.19 Aligned_cols=132 Identities=13% Similarity=0.144 Sum_probs=79.6
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHCC-C----------
Q ss_conf 84899628225588976215778566878998767089826788882444208999999--9876559-9----------
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVE--NEYLAKG-K---------- 120 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~ve--k~l~~~~-~---------- 120 (963)
++.++-=.-|+|+|+||+||+||-+|.|.++|-.+..||+|...-=..-.|..+-.-+. +..+... .
T Consensus 19 kkI~vE~~S~Np~kplHvGHlR~aiiGdslarll~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~l~~ 98 (345)
T pfam00750 19 KKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGMLIASLEAAAKEELTVPMPIQDLED 98 (345)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 88999853899998850410152799999999999879959899876864899999999999856665455665056666
Q ss_pred -----CH------------------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHH
Q ss_conf -----83------------------3489999999999999999999999999706077636981157767989999999
Q gi|254780445|r 121 -----KK------------------DDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASEL 177 (963)
Q Consensus 121 -----~~------------------~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F 177 (963)
.. -+-+..++++.+ .....+.++++++++|+.+|-- +.-.+-.+...+..++
T Consensus 99 ~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~---~~~~~~~~~~~l~~l~v~fD~~--~~Ese~~~~~~v~~vl 173 (345)
T pfam00750 99 GYRGIKKDYIAEEIFAKEARNAVVLLQSGDEEFREMW---VLLIFDHIKQSLNKIYDDFDVT--LHEGESVYKGRMNDAV 173 (345)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHH---HHHHHHHHHHHHHHHCCHHCCC--CCHHHHHHCCHHHHHH
T ss_conf 4215668888689999858998745001479999999---9999999999999964053767--1067888445099999
Q ss_pred HHHHHCCCEECCC
Q ss_conf 9999879611034
Q gi|254780445|r 178 LKIAESDQIYRGI 190 (963)
Q Consensus 178 ~~l~~kGliyr~~ 190 (963)
.+|.++|++|+..
T Consensus 174 ~~L~~~g~~~e~d 186 (345)
T pfam00750 174 KDLKDNGLVYEND 186 (345)
T ss_pred HHHHHCCCEEEEC
T ss_conf 9998779889748
No 66
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=2.5e-06 Score=61.92 Aligned_cols=99 Identities=21% Similarity=0.301 Sum_probs=63.4
Q ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-C-------CHHHHHHHHHHHHCCCCHHHC
Q ss_conf 84899628225588976215778566878998767089826788882444-2-------089999999876559983348
Q gi|254780445|r 54 KNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCH-G-------LPIEWKVENEYLAKGKKKDDI 125 (963)
Q Consensus 54 ~~f~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~h-G-------LPiE~~vek~l~~~~~~~~~~ 125 (963)
..+++-.| =.|||.+|+|.++--...|++.|--|-+|+.|.++.=||-. | ||-....++-++..-. ++
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt---~I 94 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLT---EI 94 (521)
T ss_pred CCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCC---CC
T ss_conf 86898347-689887321428989899999999997488657999814875101279999986899987099643---48
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
Q ss_conf 999999999999999999999999970607763
Q gi|254780445|r 126 PVNEFRQACRDSASAWVKIQSKEFQRLGIVGDF 158 (963)
Q Consensus 126 ~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw 158 (963)
+ ..| .-|..|+.+|.......+.++|+-..|
T Consensus 95 P-dP~-G~~~Sya~hf~~~f~~~l~~~Gi~~E~ 125 (521)
T COG1384 95 P-DPF-GCCDSYAEHFLRPFEEFLDEFGIEVEF 125 (521)
T ss_pred C-CCC-CCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9-976-653359999999999999864986499
No 67
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.97 E-value=1.4e-05 Score=56.75 Aligned_cols=120 Identities=17% Similarity=0.286 Sum_probs=77.8
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHH
Q ss_conf 62822558897621577856687899876708982678888244420899999998765599833489999999999999
Q gi|254780445|r 59 HDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSA 138 (963)
Q Consensus 59 ~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a 138 (963)
..| |.+-+.+|+||+++++.-|++.||-+-+||.|.|....--=+=.|-.++.+ . .++. .++|
T Consensus 25 ~CG-PTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDIDDKII~~A~~----~-----~~~~-------~ela 87 (213)
T cd00672 25 VCG-PTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE----E-----GLSI-------KEVA 87 (213)
T ss_pred ECC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH----C-----CCCH-------HHHH
T ss_conf 789-968899876534257689999999996399358999726751899999998----3-----9999-------9999
Q ss_pred HHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEE-EEEECCE
Q ss_conf 999999999999706077636981157767989999999999987961103430220574357365002101-3210577
Q gi|254780445|r 139 SAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEY-HDVDSDS 217 (963)
Q Consensus 139 ~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey-~d~~~~s 217 (963)
.++++.+.+++++||+. ++ |..|.- |=..| +|+|...... -|..+-+
T Consensus 88 ~~y~~~f~~d~~~Lni~----~p--~~~Pra-------------------------WHiEC-saM~~~~lg~~~DIH~GG 135 (213)
T cd00672 88 EYYTAEFFEDMKALNVL----PP--DVYPRV-------------------------WHIEC-SAMSMKYLGETFDIHGGG 135 (213)
T ss_pred HHHHHHHHHHHHHHCCC----CC--CCCCCE-------------------------EEEEC-HHHHHHHHCCCEEEECCC
T ss_conf 99999999999982899----99--813545-------------------------20145-999898828962563476
Q ss_pred EEEEEEECCC
Q ss_conf 9998330375
Q gi|254780445|r 218 ILVGFPVKSS 227 (963)
Q Consensus 218 ~~v~F~l~~~ 227 (963)
+...||=-..
T Consensus 136 ~DL~FPHHeN 145 (213)
T cd00672 136 VDLIFPHHEN 145 (213)
T ss_pred CCCCCCCCCC
T ss_conf 3565899704
No 68
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.89 E-value=5.9e-05 Score=52.43 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHH
Q ss_conf 28225588976215778566878998767089826788882444208999999987655998334899999999999999
Q gi|254780445|r 60 DGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSAS 139 (963)
Q Consensus 60 dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~ 139 (963)
=.||.|||.||+|||++-.+-..+||- ..|.-+|..=-.| |. + + ....
T Consensus 104 RFaP~P~G~LHiGhar~al~N~~~Ak~--~~G~~iLR~eDTd----p~------------~--~------------r~~~ 151 (566)
T PRK04156 104 RFAPNPSGPLHLGHARAAILNDEYAKR--YGGKFILRFEDTD----PR------------T--K------------RPDP 151 (566)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC----CC------------C--C------------CCCH
T ss_conf 528699987618999999996999998--0998999965888----33------------2--5------------5637
Q ss_pred HHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 999999999997060776369811577679899999999999879611034
Q gi|254780445|r 140 AWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGI 190 (963)
Q Consensus 140 ~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~ 190 (963)
++.+.++++++=||+ +|+.+|.+.| |...-...-.+|.++|.+|...
T Consensus 152 e~~~~I~~dl~WLG~--~~de~~~qSd--r~~~y~~~a~~Li~~G~AY~c~ 198 (566)
T PRK04156 152 EAYDMIREDLKWLGV--KPDEVVIQSD--RLEIYYEYARKLIEMGGAYVCT 198 (566)
T ss_pred HHHHHHHHHHHHHCC--CCCCCEEHHH--HHHHHHHHHHHHHHCCCEEECC
T ss_conf 899999999998299--9780166576--1999999999999879927778
No 69
>PRK12410 glutamyl-tRNA synthetase; Provisional
Probab=97.87 E-value=0.00011 Score=50.67 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 22558897621577856687899876708982678888244420899999998765599833489999999999999999
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW 141 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~ 141 (963)
-|.|+|.||+||+++-..-=.+||- ..|.-+|.+=-.|. .+ .+..+
T Consensus 5 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~------------------~R--------------~~~~~ 50 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFIIRIEDTDK------------------ER--------------NIEGK 50 (433)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC------------------CC--------------CCHHH
T ss_conf 9797996427899999999999985--59989998787899------------------98--------------98699
Q ss_pred HHHHHHHHHHCCEEEECCCCEECCCH-HHHHHHHHHHHHHHHCCCEECC
Q ss_conf 99999999970607763698115776-7989999999999987961103
Q gi|254780445|r 142 VKIQSKEFQRLGIVGDFENPYTTMTR-ESEAQIASELLKIAESDQIYRG 189 (963)
Q Consensus 142 i~~~~~~~~rlG~~~Dw~~~y~T~dp-~y~~~~~~~F~~l~~kGliyr~ 189 (963)
.+.+.++++-+|+ +|+.+|.-.+. +.| .....+|.++|.+|+-
T Consensus 51 ~~~i~~~L~wlGl--~wDe~~~QS~R~~~Y---~~~~~~L~~~g~aY~C 94 (433)
T PRK12410 51 DKEILEILNLFGI--SWDKLVYQSENLKFH---RQMAEKLLSEKKAFAC 94 (433)
T ss_pred HHHHHHHHHHCCC--CCCCCEECCCCHHHH---HHHHHHHHHCCCEEEE
T ss_conf 9999999998599--999883125789999---9999999980996896
No 70
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.79 E-value=6.4e-05 Score=52.20 Aligned_cols=89 Identities=18% Similarity=0.117 Sum_probs=60.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 82255889762157785668789987670898267888824442089999999876559983348999999999999999
Q gi|254780445|r 61 GPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASA 140 (963)
Q Consensus 61 gPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~ 140 (963)
.||.|||.||+||+++-.+--.+||- ..|.-+|..=-.| ++ ....+
T Consensus 6 FAPsPtG~lHiG~artal~n~l~Ar~--~~G~~iLRiEDTD-------------------------~~-------r~~~e 51 (238)
T cd00807 6 FPPEPNGYLHIGHAKAAILNFEYAKR--YGGKLILRFDDTN-------------------------PK-------KEDEE 51 (238)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC-------------------------CC-------CCCCH
T ss_conf 08898986438999999999999998--2996999867789-------------------------87-------67616
Q ss_pred HHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 99999999997060776369811577679899999999999879611
Q gi|254780445|r 141 WVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIY 187 (963)
Q Consensus 141 ~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliy 187 (963)
+.+.+.+.++-||+ +|+.+|...+. ...-.....+|.++|++|
T Consensus 52 ~~~~I~~~L~wLGl--~~De~~~QS~r--~~~y~~~a~~Li~~G~AY 94 (238)
T cd00807 52 AYDSILEDLEWLGI--KPDEITYASDY--FDLYYEYAEKLIKMGKAY 94 (238)
T ss_pred HHHHHHHHHHHHCC--CCCCCEECCCC--HHHHHHHHHHHHHCCCCC
T ss_conf 89999999998489--99931563667--999999999999879987
No 71
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.77 E-value=8e-05 Score=51.50 Aligned_cols=38 Identities=29% Similarity=0.447 Sum_probs=35.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 25588976215778566878998767-089826788882
Q gi|254780445|r 63 PYANGHIHIGHALNKILKDVIVRSFQ-MRNFNACFVPGW 100 (963)
Q Consensus 63 Py~nG~lH~GH~~n~~~kDi~~Ry~r-m~G~~Vl~~~Gw 100 (963)
|.+--..||||||++|.=|++.||-+ ..||.|-|+.-+
T Consensus 30 pTVYd~~HiGhaR~~i~fD~~~R~L~d~~GY~V~yV~Ni 68 (660)
T TIGR00435 30 PTVYDYAHIGHARTAIVFDVLRRYLEDYLGYEVQYVQNI 68 (660)
T ss_pred CHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEE
T ss_conf 317621030346630257888999988758867888643
No 72
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.75 E-value=0.00014 Score=49.81 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 22558897621577856687899876708982678888244420899999998765599833489999999999999999
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW 141 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~ 141 (963)
.|.|+|.||+||+++-..--.+||- ..|.-+|.+=-.| ..+ .+..+
T Consensus 8 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD------------------~~R--------------~~~~~ 53 (461)
T PRK12558 8 APSPTGYIHIGNARTALFNWLFARA--HGGKFILRYDDTD------------------VER--------------SKQEY 53 (461)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC------------------CCC--------------CCHHH
T ss_conf 9898985327899999999999996--1998999877689------------------876--------------88799
Q ss_pred HHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 999999999706077636981157767989999999999987961103
Q gi|254780445|r 142 VKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRG 189 (963)
Q Consensus 142 i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~ 189 (963)
.+.+.+.++-+|+ ||+-+|.-... ...=.....+|.++|.+|+-
T Consensus 54 ~~~i~~~L~WlGl--~wDe~~~QS~r--~~~Y~~~~~~L~~~g~aY~C 97 (461)
T PRK12558 54 ADAIADDLRWLGL--DPDRVEYQSKR--FDRYAEAAEKLKAAGLLYAC 97 (461)
T ss_pred HHHHHHHHHHCCC--CCCCCCHHHCC--HHHHHHHHHHHHHCCCCEEC
T ss_conf 9999999998799--99987416439--99999999999986993653
No 73
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=97.71 E-value=0.00033 Score=47.27 Aligned_cols=99 Identities=25% Similarity=0.303 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCCC--HHHHHHHHHH-HHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 4310025544421--1124554443-311784000013037826213453000012344333664113675788788871
Q gi|254780445|r 586 PADVYLEGSDQHR--GWFQHSLLES-CATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN 662 (963)
Q Consensus 586 PaD~~~eG~Dq~R--gWF~s~ll~~-~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~ 662 (963)
-+|+=..|+|-.- |=+.++--++ -++...+|. -+.-.|+++.+|.|||||+||+|+|.++++-+-.++|||+++.
T Consensus 230 gVdfEp~GKDh~~~GGS~~~~~~I~~~i~g~~pP~--~~~YE~~~~kgg~KmSsSkGn~is~~e~L~~~~pE~Lr~l~~~ 307 (355)
T pfam01921 230 GVDFEPFGKDHAAPGGSYDTSSRIAREILGGEPPE--PFPYELILLKGGGKMSSSKGNGITIEEWLEYAPPESLRFLMFR 307 (355)
T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCC--CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCC
T ss_conf 63486257432467876222899999970999999--8865789966997104688987699999986699999999804
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 787665544310256777640000
Q gi|254780445|r 663 SDYHDDQRLGKNIIQTNIDTYRKL 686 (963)
Q Consensus 663 ~~~~~d~~~~~~~l~~~~~~~~kl 686 (963)
+.|.+..+|+-+.+-...+-|-++
T Consensus 308 ~~P~~a~~l~fd~ip~~~Deyd~~ 331 (355)
T pfam01921 308 VKPKKAKRLDFDVIPKLVDEYDRL 331 (355)
T ss_pred CCCCCCEEECCCHHHHHHHHHHHH
T ss_conf 288845120730446689999999
No 74
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.67 E-value=1.8e-05 Score=55.99 Aligned_cols=70 Identities=27% Similarity=0.449 Sum_probs=49.1
Q ss_pred HHHHHCCCCCCHHHHC-CCC--CCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCC--CCCCCCCCCHHH
Q ss_conf 3566479821000000-122--11321013203333102366302245542368999987520000--024443432024
Q gi|254780445|r 412 AALINACAILNRSIVK-HSY--PHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIR--FFPSSGKNRLRS 486 (963)
Q Consensus 412 ~~L~e~g~l~~~~~~~-H~y--P~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~--~~P~~~k~r~~~ 486 (963)
..--+.+-.|+.|.+. -|= |-||||+.+|+-|..+|||++++ .+.+++|+-|++.+ | |+..|.-=.|
T Consensus 156 NWCP~d~TVLANEqVi~DS~Gna~SwR~~~~Vekk~l~QW~LKIT-------~YAe~LL~dLe~L~D~W-P~~VK~MQrN 227 (916)
T TIGR00396 156 NWCPNDGTVLANEQVIIDSDGNARSWRGGTPVEKKELKQWFLKIT-------AYAEELLNDLEELDDHW-PESVKEMQRN 227 (916)
T ss_pred EECCCCCCCCCCHHEEECCCCCCEEECCCCCEEEEECCCCEEHHH-------HHHHHHHHHHHCCCCCC-CHHHHHCCCC
T ss_conf 306777845102030122789853224878446630675101133-------78898541142046788-7313640454
Q ss_pred HHH
Q ss_conf 430
Q gi|254780445|r 487 MIE 489 (963)
Q Consensus 487 ~i~ 489 (963)
||-
T Consensus 228 WIG 230 (916)
T TIGR00396 228 WIG 230 (916)
T ss_pred CCC
T ss_conf 565
No 75
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.67 E-value=2.9e-05 Score=54.60 Aligned_cols=55 Identities=40% Similarity=0.525 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCC---CCCEEEEECCCCCEECCCC-CCHHCCCCCCCCHHH
Q ss_conf 431002554442111245544433117---8400001303782621345-300001234433366
Q gi|254780445|r 586 PADVYLEGSDQHRGWFQHSLLESCATR---GSTPFTSLITHGFSVDENG-EKMSKSKGNVVFPEE 646 (963)
Q Consensus 586 PaD~~~eG~Dq~RgWF~s~ll~~~~~~---~~~Pfk~v~~hG~vld~~G-~KMSKS~GNvi~p~~ 646 (963)
-+|+-++|+|| ||+ ++.+.-+. +..| .-+++.-++.+.+| +|||||.||.|...+
T Consensus 185 ~~~iqiGGsDQ---~gN--i~~G~dL~r~~~~~~-~~~lT~PLL~~~dG~~KmgKS~gnaIwLd~ 243 (405)
T PRK13354 185 DADIELGGTDQ---WFN--ILMGRDLQRKLGEEK-QVGITMPLLEGLDGTEKMSKSLGNYIGLDE 243 (405)
T ss_pred CCCEEEECHHH---HHH--HHHHHHHHHHHCCCC-CEEEEECCEECCCCCCCCCCCCCCCEECCC
T ss_conf 88379950868---889--997999999857898-359960615788775532501278631479
No 76
>pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Probab=97.66 E-value=0.00021 Score=48.54 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=58.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 22558897621577856687899876708982678888244420899999998765599833489999999999999999
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW 141 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~ 141 (963)
+|.|||.||+||+++-.+.-.+||- ..|.-+|.+=-.|. +. ...++
T Consensus 7 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDtD~-------------------------~R-------~~~e~ 52 (314)
T pfam00749 7 APSPTGYLHIGHARTALFNYLFAKN--YNGKFILRFDDTDP-------------------------ER-------EKPEY 52 (314)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC-------------------------CC-------CCHHH
T ss_conf 8898986448999999999999998--09989999687898-------------------------86-------87689
Q ss_pred HHHHHHHHHHCCEEEECCC-CEECCCHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 9999999997060776369-811577679899999999999879611034
Q gi|254780445|r 142 VKIQSKEFQRLGIVGDFEN-PYTTMTRESEAQIASELLKIAESDQIYRGI 190 (963)
Q Consensus 142 i~~~~~~~~rlG~~~Dw~~-~y~T~dp~y~~~~~~~F~~l~~kGliyr~~ 190 (963)
.+.+.++++-||+ +|+. +|.-.+ ....=...+.+|.++|++|+-.
T Consensus 53 ~~~I~~dL~wLGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~g~aY~C~ 98 (314)
T pfam00749 53 EESILEDLKWLGI--KWDEKPYYQSD--RFDIYYKYAEELIEKGLAYVCF 98 (314)
T ss_pred HHHHHHHHHHHCC--CCCCCCEEHHC--CHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999537--89988355202--0999999999999749952258
No 77
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=97.62 E-value=0.00078 Score=44.66 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCCC--HHHHHHHHHHHHCCC-CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 4310025544421--112455444331178-4000013037826213453000012344333664113675788788871
Q gi|254780445|r 586 PADVYLEGSDQHR--GWFQHSLLESCATRG-STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVN 662 (963)
Q Consensus 586 PaD~~~eG~Dq~R--gWF~s~ll~~~~~~~-~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~ 662 (963)
-+|+=..|+|-+- |=+.++-.++-.++| .+| .-+...|+++.+|.|||||+||+++|.++++-+..++|||+++.
T Consensus 227 gVd~Ep~GKDh~~~GgS~d~~~~I~~~i~g~~pP--~~~~YE~~~~kgg~KmSsSkGn~it~~e~L~~~~pE~lr~l~~~ 304 (354)
T cd00674 227 GVDFEPFGKDHASSGGSYDTSKEIAREIFGGEPP--EGVMYEFIGLKGGGKMSSSKGNVITPRDWLEVAPPESLRFLYAR 304 (354)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHH
T ss_conf 5158835742024675255789999997099999--88416999906998722467861289999976599999999860
Q ss_pred CC-CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78-7665544310256777640000
Q gi|254780445|r 663 SD-YHDDQRLGKNIIQTNIDTYRKL 686 (963)
Q Consensus 663 ~~-~~~d~~~~~~~l~~~~~~~~kl 686 (963)
.+ +...+.|+.++.+.+-++.+-.
T Consensus 305 ~p~~~k~i~fD~~ip~~~Deyd~~~ 329 (354)
T cd00674 305 RKNPAKHIGFDLDIPRLYDEYDRLE 329 (354)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9985532246757567798999999
No 78
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.59 E-value=0.00031 Score=47.43 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 25588976215778566878998767089826788882444208999999987655998334899999999999999999
Q gi|254780445|r 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWV 142 (963)
Q Consensus 63 Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i 142 (963)
|.|+|.||+|++++-..-=.+|| ...|.-+|.+=-.| ..+ .+..+.
T Consensus 9 PSPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRieDtD------------------~~R--------------~~~~~~ 54 (467)
T PRK01406 9 PSPTGYLHVGGARTALFNWLFAR--HHGGKFILRIEDTD------------------LER--------------STPEAV 54 (467)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEECCCC------------------CCC--------------CCHHHH
T ss_conf 99998422478999999999999--72996999968799------------------887--------------877999
Q ss_pred HHHHHHHHHCCEEEECC-CCEECCC-HHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 99999999706077636-9811577-67989999999999987961103
Q gi|254780445|r 143 KIQSKEFQRLGIVGDFE-NPYTTMT-RESEAQIASELLKIAESDQIYRG 189 (963)
Q Consensus 143 ~~~~~~~~rlG~~~Dw~-~~y~T~d-p~y~~~~~~~F~~l~~kGliyr~ 189 (963)
+.+.+.++-+|+ +|+ -+|.-.. -+.| +....+|.++|.+|+-
T Consensus 55 ~~i~~~l~wlgi--~~de~p~~QS~r~~~y---~~~~~~L~~~g~aY~c 98 (467)
T PRK01406 55 DAILDGLKWLGL--DWDEGPYRQSERFDRY---KEVAEQLLEKGKAYYC 98 (467)
T ss_pred HHHHHHHHHCCC--CCCCCCEEHHCCHHHH---HHHHHHHHHCCCCEEC
T ss_conf 999999998799--9998886174489999---9999999984998644
No 79
>PRK00574 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.57 E-value=0.00014 Score=49.72 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 22558897621577856687899876708982678888244420899999998765599833489999999999999999
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW 141 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~ 141 (963)
-|.|+|.||+|.+++-..-=.+||- ..|.-+|.+=-.| ..+ .+..+
T Consensus 10 APSPTG~lHiG~~rtAl~n~l~Ar~--~~G~fiLRIEDTD------------------~~R--------------~~~~~ 55 (489)
T PRK00574 10 APSPTGYLHIGNARTALFNYLFAKH--NNGKFILRIEDTD------------------QER--------------NVEGG 55 (489)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCC------------------CCC--------------CCHHH
T ss_conf 9899984224789999999999996--4998999867789------------------877--------------87699
Q ss_pred HHHHHHHHHHCCEEEECC-------CCEECCC--HHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 999999999706077636-------9811577--679899999999999879611034
Q gi|254780445|r 142 VKIQSKEFQRLGIVGDFE-------NPYTTMT--RESEAQIASELLKIAESDQIYRGI 190 (963)
Q Consensus 142 i~~~~~~~~rlG~~~Dw~-------~~y~T~d--p~y~~~~~~~F~~l~~kGliyr~~ 190 (963)
++.+.+.++-+|+-.|=. -||.-.. +-| +....+|.++|.+|+-+
T Consensus 56 ~~~I~~~L~wlgl~~DE~p~~~g~~gPY~QS~R~~~Y----~~~a~~Ll~~G~AY~Cf 109 (489)
T PRK00574 56 EESQLENLKWLGIDWDEGPDKGGEYGPYRQSERLDIY----QKYADQLLEEGKAYYCF 109 (489)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHCCCCEECC
T ss_conf 9999999998798887787778888883512689999----99999999749974525
No 80
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00028 Score=47.78 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 82255889762157785668789987670898267888824442089999999876559983348999999999999999
Q gi|254780445|r 61 GPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASA 140 (963)
Q Consensus 61 gPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~ 140 (963)
-||.|||.||+|||++-.+--.+||- ..|.-++..=-.|- .+ -..+
T Consensus 14 FAPsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLRiEDTD~------------------~R--------------~~~e 59 (472)
T COG0008 14 FAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRIEDTDP------------------ER--------------ETPE 59 (472)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCCC------------------CC--------------CCHH
T ss_conf 79599985426889999997999998--39979999647998------------------87--------------8878
Q ss_pred HHHHHHHHHHHCCEEEECCC-CEECCC--HHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 99999999997060776369-811577--67989999999999987961103
Q gi|254780445|r 141 WVKIQSKEFQRLGIVGDFEN-PYTTMT--RESEAQIASELLKIAESDQIYRG 189 (963)
Q Consensus 141 ~i~~~~~~~~rlG~~~Dw~~-~y~T~d--p~y~~~~~~~F~~l~~kGliyr~ 189 (963)
+.+.+.++++-|| ++|+. +|...+ +.|+ ..-.+|.++|++|.-
T Consensus 60 ~~~~I~~~L~WLG--l~wde~~~~QS~r~~~Y~----~~~~~Li~~G~AY~c 105 (472)
T COG0008 60 AEDAILEDLEWLG--LDWDEGPYYQSERFDIYY----EYAEKLIEKGKAYVC 105 (472)
T ss_pred HHHHHHHHHHHCC--CCCCCCEEEHHHHHHHHH----HHHHHHHHCCCEEEE
T ss_conf 9999999998668--888976143642399999----999999987996886
No 81
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.51 E-value=0.00041 Score=46.62 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=59.5
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH
Q ss_conf 99628225588976215778566878998767089826788882444208999999987655998334899999999999
Q gi|254780445|r 57 TLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRD 136 (963)
Q Consensus 57 ~l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~ 136 (963)
|..=.||-|||.||+|||..-.+-.-+|+. ..|+-.|. ||-.- | ++ +
T Consensus 30 VvtRFpPePnG~LHiGHaka~~lN~~~a~~--y~G~~~LR---fDDTN-P---------------------~~------e 76 (556)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLR---FDDTN-P---------------------EK------E 76 (556)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEE---ECCCC-C---------------------CC------C
T ss_conf 998049899987618888999866999997--09989998---35899-8---------------------74------5
Q ss_pred HHHHHHHHHHHHHHHCCEEEECCCC-EECCCHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 9999999999999970607763698-115776798999999999998796110
Q gi|254780445|r 137 SASAWVKIQSKEFQRLGIVGDFENP-YTTMTRESEAQIASELLKIAESDQIYR 188 (963)
Q Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~-y~T~dp~y~~~~~~~F~~l~~kGliyr 188 (963)
..++++.++++++-||+- |... +.|.| |.......-.+|.++|++|-
T Consensus 77 -~~e~~~~I~~d~~wLg~~--~~~~i~~~Sd--~f~~~y~~a~~LI~~g~AYv 124 (556)
T PRK05347 77 -DQEYVDSIKEDVRWLGFD--WGGELRYASD--YFDQLYEYAVELIKKGKAYV 124 (556)
T ss_pred -CHHHHHHHHHHHHHCCCC--CCCEEEEEHH--HHHHHHHHHHHHHHCCCCEE
T ss_conf -489999999999874998--8982788134--29999999999986488135
No 82
>pfam06827 zf-FPG_IleRS Zinc finger found in FPG and IleRS. This zinc binding domain is found at the C-terminus of isoleucyl tRNA synthetase and the enzyme Formamidopyrimidine-DNA glycosylase EC:3.2.2.23.
Probab=97.48 E-value=1.9e-05 Score=55.76 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 852852175467447885635303788999
Q gi|254780445|r 922 GKKCARSWRVTKDVGLDASYPDVSARDAAV 951 (963)
Q Consensus 922 ~~KC~RCW~~~~~v~~~~~~~~lC~RC~~v 951 (963)
|.||+|||++.++++.+..++.+|+||.++
T Consensus 1 g~kC~RCw~~~~~~~~~~r~~~~C~rCq~~ 30 (30)
T pfam06827 1 GEKCPRCWTYIEKVGQGGRSTFLCPRCQKV 30 (30)
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 982774799715768558888118053249
No 83
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=97.47 E-value=0.00058 Score=45.54 Aligned_cols=95 Identities=19% Similarity=0.146 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHH-HHHCC
Q ss_conf 43100255444211124554443311784000013037826213453000012344333664113675788788-87178
Q gi|254780445|r 586 PADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYW-AVNSD 664 (963)
Q Consensus 586 PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~-~~~~~ 664 (963)
-+|+=.-|+|-.-.|=-+.-+. -.+.+.+|. -+.=.|+||++|+|||||+||+|+|.++++=+-.+.+.+| .++..
T Consensus 241 ~Vd~Ep~GKDh~~S~~~~~~I~-~i~g~~pP~--~~~YE~fLd~~G~KmSsSkGngit~~ewL~~~~PEsl~rfm~~~pk 317 (513)
T PRK00750 241 GVDFEPAGKDHISSYDTSSRIC-EILGGEPPE--GFMYELFLDGKGQKISKSKGNGISIEDWLEYAPPESLARFMYARPK 317 (513)
T ss_pred CCCCCCCCCCCCCCHHHHHHHH-HHHCCCCCC--CCCEEEEECCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 6430346511212076799999-983899999--9872279837986630568972389999975599999999971889
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 76655443102567776400
Q gi|254780445|r 665 YHDDQRLGKNIIQTNIDTYR 684 (963)
Q Consensus 665 ~~~d~~~~~~~l~~~~~~~~ 684 (963)
+.+.+.|+. +.+.+-++.+
T Consensus 318 paK~l~fd~-ipk~~DEY~~ 336 (513)
T PRK00750 318 PAKRLYFDV-IPKLVDEYDK 336 (513)
T ss_pred CCCCCCHHH-HHHHHHHHHH
T ss_conf 884015656-6677899999
No 84
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.40 E-value=5e-05 Score=52.91 Aligned_cols=54 Identities=30% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCCCCEECCCCCCHHCCCCCCC
Q ss_conf 344310025544421112455444331--17840000130378262134530000123443
Q gi|254780445|r 584 AWPADVYLEGSDQHRGWFQHSLLESCA--TRGSTPFTSLITHGFSVDENGEKMSKSKGNVV 642 (963)
Q Consensus 584 ~~PaD~~~eG~Dq~RgWF~s~ll~~~~--~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi 642 (963)
.+-+|+.+.|.||- .+-.+-.-++ +..+.| -++++.++.+.+|+|||||.||.|
T Consensus 148 ~~~~~~vpvG~DQ~---~hiel~Rdia~r~n~~~~--~~l~~pll~g~dG~KMSKS~~N~i 203 (268)
T cd00805 148 YLDVDIQLGGSDQR---GNITLGRDLIRRLGYKKV--VGLTTPLLTGLDGGKMSKSEGNAI 203 (268)
T ss_pred HHCCCCEECCHHHH---HHHHHHHHHHHHHCCCCC--EEEEECEEECCCCCCCCCCCCCCC
T ss_conf 71377146060089---999999999998289761--455311000899874467899950
No 85
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.39 E-value=0.00075 Score=44.77 Aligned_cols=89 Identities=16% Similarity=0.279 Sum_probs=55.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 22558897621577856687899876708982678888244420899999998765599833489999999999999999
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW 141 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~ 141 (963)
.|.|||.||+||+++-...-.+||- ..|.-++.+=-.| +.. ....+
T Consensus 10 APSPTG~LHlG~~rtAl~n~l~Ar~--~~G~~iLRIEDtD-------------------------~~R-------~~~~~ 55 (299)
T PRK05710 10 APSPSGPLHFGSLVSALLSYLDARA--QGGRWLVRIEDID-------------------------PPR-------EVPGA 55 (299)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECCCC-------------------------CCC-------CCHHH
T ss_conf 9699985328999999999999998--2998999867789-------------------------765-------87689
Q ss_pred HHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 9999999997060776369811577679899999999999879611
Q gi|254780445|r 142 VKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIY 187 (963)
Q Consensus 142 i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliy 187 (963)
.+.+.++++-||+ +|+.+...-+ +....=+..+.+|.++|++|
T Consensus 56 ~~~Il~~L~wlGl--~wD~~~~~QS-~R~~~Y~~~~~~L~~~g~aY 98 (299)
T PRK05710 56 AAAILADLEWLGL--HWDGPVRRQS-ERHDAYRAALDRLAAAGLVY 98 (299)
T ss_pred HHHHHHHHHHHCC--CCCCCCHHHH-HHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999568--8887404888-58999999999999769902
No 86
>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains.
Probab=97.34 E-value=0.001 Score=43.80 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHH
Q ss_conf 22558897621577856687899876708982678888244420899999998765599833489999999999999999
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW 141 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~ 141 (963)
||.|||.||+||+++-.+-..+||- ..|.-++..=- +.++ ....++
T Consensus 7 APsPtG~LHiG~ar~al~n~~~Ak~--~~G~~~LRieD-------------------------TD~~-------r~~~e~ 52 (223)
T cd00418 7 APSPTGYLHIGHARAALLNYLYAKK--YGGKFILRFDD-------------------------TDPE-------REVEEA 52 (223)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEEEECC-------------------------CCCC-------CCHHHH
T ss_conf 8898985428999999999999998--59989997236-------------------------8864-------018889
Q ss_pred HHHHHHHHHHCCEEEECCC-CEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999997060776369-811577679899999999999879
Q gi|254780445|r 142 VKIQSKEFQRLGIVGDFEN-PYTTMTRESEAQIASELLKIAESD 184 (963)
Q Consensus 142 i~~~~~~~~rlG~~~Dw~~-~y~T~dp~y~~~~~~~F~~l~~kG 184 (963)
.+.+.++++-||+ +|+. +|.+.+ +...-.....+|.++|
T Consensus 53 ~~~I~~dL~wLGl--~~d~~~~~QS~--r~~~y~~~~~~Li~~G 92 (223)
T cd00418 53 EDSILEDLKWLGI--KWDEGPYYQSD--RFDIYYEYAEKLIEEG 92 (223)
T ss_pred HHHHHHHHHHHCC--CCCCCEEEHHH--HHHHHHHHHHHHHHCC
T ss_conf 9999999999189--99986853875--8999999999997569
No 87
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.23 E-value=9.7e-05 Score=50.93 Aligned_cols=71 Identities=25% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH------HHHCCC----CCEEEEECC-CC-CEECCCCCCHHCC
Q ss_conf 35454332222233344310025544421112455444------331178----400001303-78-2621345300001
Q gi|254780445|r 570 ACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLE------SCATRG----STPFTSLIT-HG-FSVDENGEKMSKS 637 (963)
Q Consensus 570 g~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~------~~~~~~----~~Pfk~v~~-hG-~vld~~G~KMSKS 637 (963)
|.--|+++-.---..|-++...-|.||. |++=|+ .-.++| ..| ..++. ++ .+.+-||+|||||
T Consensus 132 GLf~YPVLMAADILly~A~~VPVG~DQ~----QHlEltRdIA~rFN~~YG~e~F~~P-ea~i~e~~a~lpGlDGrKMSKS 206 (436)
T PRK12284 132 GLFMYPVLMAADILMFNAHKVPVGRDQI----QHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKS 206 (436)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1224707888767740687512675569----9999999999999987088363788-4423688772249998705578
Q ss_pred CCCCCCHH
Q ss_conf 23443336
Q gi|254780445|r 638 KGNVVFPE 645 (963)
Q Consensus 638 ~GNvi~p~ 645 (963)
-||+|+..
T Consensus 207 y~NtI~Lf 214 (436)
T PRK12284 207 YDNTIPLF 214 (436)
T ss_pred CCCCCCCC
T ss_conf 89806487
No 88
>TIGR00440 glnS glutaminyl-tRNA synthetase; InterPro: IPR004514 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutaminyl-tRNA synthetase (6.1.1.18 from EC) is a class Ic synthetase and shows several similarities with glutamyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. Glutaminyl-tRNA synthetase is a relatively rare synthetase, found in the cytosolic compartment of eukaryotes, in Escherichia coli and a number of other Gram-negative bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln.; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.08 E-value=0.0005 Score=45.97 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHH
Q ss_conf 82255889762157785668789987670898267888824442089999999876559983348999999999999999
Q gi|254780445|r 61 GPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASA 140 (963)
Q Consensus 61 gPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~ 140 (963)
.||=|||-||+||+-.- +.- ||+.-+.+-.=.| ...+..|.+ + +-+
T Consensus 5 FPPEPNGYLHIGHaK~I-----~~N-----------------FG~Ak~y~G~C~L-----RFDDTNP~K------E-~~E 50 (564)
T TIGR00440 5 FPPEPNGYLHIGHAKSI-----CLN-----------------FGLAKEYKGTCNL-----RFDDTNPVK------E-DVE 50 (564)
T ss_pred CCCCCCCCEEHHHHHHH-----HHH-----------------CCCCCCCCCCEEE-----ECCCCCCCC------C-CCH
T ss_conf 88557873001024313-----442-----------------0320201763644-----216788864------6-601
Q ss_pred HHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 9999999999706077636981157767989999999999987961103
Q gi|254780445|r 141 WVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRG 189 (963)
Q Consensus 141 ~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~ 189 (963)
|++.+|.+..=||+--.|.- |+.-+|--..-..-..|.++|++|=.
T Consensus 51 Y~eSIK~~V~WLGFkw~g~~---~YsSDYFD~Ly~~A~~LI~~G~AYV~ 96 (564)
T TIGR00440 51 YVESIKRDVEWLGFKWEGKI---RYSSDYFDELYRYAVELIKKGLAYVD 96 (564)
T ss_pred HHHHHHHHHHHCCCCCCCCE---EECHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 78887522222251247731---33304688999999999867960675
No 89
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.91 E-value=0.0007 Score=45.00 Aligned_cols=54 Identities=39% Similarity=0.596 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCC---CCCEEEEECCCCCEECCCCC-CHHCCCCCCCCHHH
Q ss_conf 31002554442111245544433117---84000013037826213453-00001234433366
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQHSLLESCATR---GSTPFTSLITHGFSVDENGE-KMSKSKGNVVFPEE 646 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s~ll~~~~~~---~~~Pfk~v~~hG~vld~~G~-KMSKS~GNvi~p~~ 646 (963)
+|+-++|+|| ||+ ++.++-+. +..| .-.++.-++.+.+|. |||||.||.|+.++
T Consensus 182 ~~lqiGGsDQ---wgN--i~~G~dLir~~~~~~-~~glT~PLLt~~dG~K~gsKS~gnaIwLd~ 239 (402)
T PRK05912 182 ADLELGGTDQ---WFN--ILVGRDLQRRYGQEP-QFGLTMPLLTGLDGVKKMSKSLGNYIWLDE 239 (402)
T ss_pred CCEEEECHHH---HHH--HHHHHHHHHHHCCCC-CEEEEECCEECCCCCCCCCCCCCCCEECCC
T ss_conf 3347730548---999--998999999856898-379984505778768435667998701789
No 90
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=96.84 E-value=0.00064 Score=45.23 Aligned_cols=54 Identities=35% Similarity=0.364 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHC-CCC----CEEEEECCCCCEECCCC-CCHHCCCCC-CCCH
Q ss_conf 43100255444211124554443311-784----00001303782621345-300001234-4333
Q gi|254780445|r 586 PADVYLEGSDQHRGWFQHSLLESCAT-RGS----TPFTSLITHGFSVDENG-EKMSKSKGN-VVFP 644 (963)
Q Consensus 586 PaD~~~eG~Dq~RgWF~s~ll~~~~~-~~~----~Pfk~v~~hG~vld~~G-~KMSKS~GN-vi~p 644 (963)
-+|+.+.|.||- .+-++-..++- +++ .| ..+++-++.+.+| +|||||.|| .|..
T Consensus 149 ~~~i~~gG~DQ~---~~~~l~rdl~~k~~~~~~~~p--~~l~~~ll~~~~G~~KMSKS~~nsaI~L 209 (291)
T pfam00579 149 KADLQPGGSDQW---GHIELGRDLARRFNKKVFKKP--VGLTNPLLTGLDGGKKMSKSAGNSAIFL 209 (291)
T ss_pred CCCCCCCCCCHH---HHHHHHHHHHHHHCCCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 467566560048---999999999999578567883--4874166226678766367899972666
No 91
>TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.77 E-value=0.00061 Score=45.40 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=53.1
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH
Q ss_conf 96282255889762157785668789987670898267888824442089999999876559983348999999999999
Q gi|254780445|r 58 LHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDS 137 (963)
Q Consensus 58 l~dgPPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~ 137 (963)
..=.||.|||+||+|||+.-++=+=+|| .-.|+-++..==+| | . .+...
T Consensus 103 V~RFaPnPsGpLhiGhArAa~lN~~fa~--~Y~GklIlR~dDTd----P------------~--tkr~~----------- 151 (600)
T TIGR00463 103 VMRFAPNPSGPLHIGHARAAILNQYFAK--KYEGKLILRFDDTD----P------------R--TKRVK----------- 151 (600)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHH--HCCCCEEEEEECCC----C------------C--CCCCC-----------
T ss_conf 7731854545875233542232046685--41881799975587----8------------8--78887-----------
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCC
Q ss_conf 9999999999999706077636981157767989999999999987961103430220574
Q gi|254780445|r 138 ASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIA 198 (963)
Q Consensus 138 a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~ 198 (963)
.++-+...+++.=||+-.| + .|+..+|...=-.==.||-+.|-+| |=-|+.
T Consensus 152 -~Eayd~i~eDLdwLG~k~D--e--v~y~Sdr~~~yYdY~~kLIe~G~AY-----~C~c~~ 202 (600)
T TIGR00463 152 -PEAYDMILEDLDWLGVKGD--E--VVYQSDRIEIYYDYARKLIEMGKAY-----VCDCSP 202 (600)
T ss_pred -HHHHHHHHHHHHHCCCCEE--E--EEEEECCHHHHHHHHHHHHHCCCCE-----ECCCCC
T ss_conf -2466524877875284200--6--8983053015689999998669834-----327984
No 92
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.74 E-value=0.00083 Score=44.46 Aligned_cols=54 Identities=35% Similarity=0.421 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH--CCC-CCEEEEECCCCCEECCCC-CCHHCCCCCCCC
Q ss_conf 44310025544421112455444331--178-400001303782621345-300001234433
Q gi|254780445|r 585 WPADVYLEGSDQHRGWFQHSLLESCA--TRG-STPFTSLITHGFSVDENG-EKMSKSKGNVVF 643 (963)
Q Consensus 585 ~PaD~~~eG~Dq~RgWF~s~ll~~~~--~~~-~~Pfk~v~~hG~vld~~G-~KMSKS~GNvi~ 643 (963)
+-+|+.+.|.||. .+-.+...++ +.+ ..| ..+++-++.+.+| +|||||.||.+-
T Consensus 140 ~~~~~v~~G~DQ~---~~~~l~Rdia~k~~~~~~p--~~l~~~~l~~l~G~~KMSKS~~ns~i 197 (274)
T cd00395 140 LKADLVPGGSDQD---PHIELGRDLARRFNGFKKP--VALTSPLLTGLDGGKKMSKSDGNAII 197 (274)
T ss_pred HCCCCCCCCCCHH---HHHHHHHHHHHHHCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 5065455561179---9999999999994499998--68723774468997674578998446
No 93
>KOG1147 consensus
Probab=96.59 E-value=0.0088 Score=37.36 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCE
Q ss_conf 999999999999706077636981157767989999999999987961103430
Q gi|254780445|r 139 SAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKP 192 (963)
Q Consensus 139 ~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~p 192 (963)
++|.+...+++..||+-.| -+|+..+|-......-.+|.+.|..|-+..|
T Consensus 249 ~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147 249 EEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred HHHHHHHHHHHHHHCCCCC----EEEECHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7899999877887085764----4453135599999999999863743136996
No 94
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=96.54 E-value=0.0021 Score=41.68 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=6.2
Q ss_pred EEEECCCCHHH
Q ss_conf 56405789889
Q gi|254780445|r 344 VHVAPSHGVED 354 (963)
Q Consensus 344 Vh~aPahg~~D 354 (963)
|-.+|.|.--+
T Consensus 258 ~~v~p~h~~~~ 268 (822)
T PRK00390 258 LVLAPEHPLAE 268 (822)
T ss_pred EEEECCCHHHH
T ss_conf 99937978999
No 95
>KOG1148 consensus
Probab=96.54 E-value=0.0078 Score=37.73 Aligned_cols=16 Identities=13% Similarity=0.136 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780445|r 126 PVNEFRQACRDSASAW 141 (963)
Q Consensus 126 ~~~~~~~~c~~~a~~~ 141 (963)
+++.+.+..+++..++
T Consensus 115 tpeqie~~V~~~i~~~ 130 (764)
T KOG1148 115 TPEQIEEAVRKYIAEN 130 (764)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 7899999999999973
No 96
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=96.52 E-value=0.013 Score=36.22 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=76.2
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH--------HHHHHCCCCCCCCCCCCC--CCCCCCCHHHH-HHHHHHH
Q ss_conf 136757887888717876655443102567776--------400000110000012244--44567310111-2788875
Q gi|254780445|r 649 SESGADVLRYWAVNSDYHDDQRLGKNIIQTNID--------TYRKLRNTIRWMLGMLAH--DTGNEPSLADM-PALEQLM 717 (963)
Q Consensus 649 ~~yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~--------~~~kl~Nt~rf~l~~l~~--~~~~~~~~~~l-~~~Dkwi 717 (963)
++-|.|++||++++.....++.|+.+.+..... .+-|+...+| .... ..........+ .+.++-+
T Consensus 1 e~Ig~~Airy~~L~~~~~~~~~FD~d~~~~~~gnt~~YiQYa~aR~~SIl~----k~~~~~~~~~~~~~~~l~~~~e~~L 76 (156)
T cd07956 1 EEVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILR----KAGETIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEECHHHHHCCCCCCCEEHHHHHHHHHHHHH----HCCCCCCCCCCCCHHCCCCHHHHHH
T ss_conf 964235788899863899984552999862368985112489999999999----7245453322254200499899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4368999999889876540122668899878630240010102012227899-808999999999999999999970
Q gi|254780445|r 718 LHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSP-SSLKRLSSIAVIRILCRHLIIWIA 793 (963)
Q Consensus 718 Lskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~-~s~~R~s~~~~L~~il~~l~~lLa 793 (963)
+.++.++-.-+..+.++++.|..+.-+++++. .+++||=+ .| .-.+.. ....|.....+...++..-+.+|.
T Consensus 77 i~~l~~fp~vl~~a~~~~~P~~l~~YL~~La~-~F~~fY~~-~~--Ii~~~~~~~~~RL~L~~a~~~vL~~gL~lLG 149 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLAH-AFSKFYNA-CP--VLGAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHH-CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99996572899999997070699999999999-99999974-98--8789889999999999999999999865119
No 97
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.024 Score=34.36 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCC--HHHHHHHHHHHHCCC-CCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHHC
Q ss_conf 310025544421--112455444331178-40000130378262134530000123443336641136757887888717
Q gi|254780445|r 587 ADVYLEGSDQHR--GWFQHSLLESCATRG-STPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNS 663 (963)
Q Consensus 587 aD~~~eG~Dq~R--gWF~s~ll~~~~~~~-~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~~ 663 (963)
+|+=.=|+|-+- |=+-+.-.++-.++| .+|.. ++=-++++..|.|||||+||+|++.++++-+-.++|||+++.+
T Consensus 230 Vd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~--~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~ 307 (521)
T COG1384 230 VDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVP--FVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIART 307 (521)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC--CCEEEEEECCCCCCCCCCCCEECHHHHHHHCCHHHEEEEEEEC
T ss_conf 31035785313456763789999998649999977--7558898548866556878578599998753984733235405
Q ss_pred CCCCCCCCC--CHHHHHHHHHH
Q ss_conf 876655443--10256777640
Q gi|254780445|r 664 DYHDDQRLG--KNIIQTNIDTY 683 (963)
Q Consensus 664 ~~~~d~~~~--~~~l~~~~~~~ 683 (963)
.|.+.++|+ ..+++-+-++.
T Consensus 308 kP~r~~~~d~~~~il~lvDEyd 329 (521)
T COG1384 308 KPNRHIDFDFDLGILKLVDEYD 329 (521)
T ss_pred CCCCCEECCCCCCHHHHHHHHH
T ss_conf 8874433178877447789999
No 98
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0043 Score=39.52 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCC
Q ss_conf 45510243100178632113554445675452356647982100000012211321013203333102366302245542
Q gi|254780445|r 380 GRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDG 459 (963)
Q Consensus 380 ~~G~~~~~~~~~~G~~v~~~~~~~~~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~ 459 (963)
++|.+.+. +.+.|+... +|...++..|.+.+. . +.-|-||+-| |
T Consensus 379 ~~g~linS-~~~~gl~~e-------~a~~~~~~~l~~~~~--~--------------q~~v~Y~lrd-W----------- 422 (814)
T COG0495 379 GEGVLINS-GGLDGLDYE-------EAKVKIRCGLVKRGL--G--------------QWFVNYRLRD-W----------- 422 (814)
T ss_pred CCCEEECC-CCCCCCCCH-------HHHHHHHHHHHHHCC--C--------------CEEEECCCCH-H-----------
T ss_conf 47457625-433676405-------679999986887237--8--------------2588514515-7-----------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC--CEEE---EE---CCCCCEEECCCHHHHHHH
Q ss_conf 368999987520000024443432024430432000011234567--2258---98---258847325211244421
Q gi|254780445|r 460 STLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGV--PICF---FY---NEKGEILLDKAINDRIIK 528 (963)
Q Consensus 460 ~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~--PIPi---~~---~e~~~~~~~~~~~~~i~~ 528 (963)
++++....++.|.++|...++-+..-++++++|.+.|.++-|+ |||. |. |.++..++...++++.++
T Consensus 423 --~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~ 497 (814)
T COG0495 423 --LKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFID 497 (814)
T ss_pred --HHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHCC
T ss_conf --789999708996454742378554736766743664114679889998883617996699853532324657604
No 99
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.0016 Score=42.48 Aligned_cols=50 Identities=34% Similarity=0.474 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCC---CCCEEEEECCCCCEECCCCCCHHCCCCCCC
Q ss_conf 31002554442111245544433117---840000130378262134530000123443
Q gi|254780445|r 587 ADVYLEGSDQHRGWFQHSLLESCATR---GSTPFTSLITHGFSVDENGEKMSKSKGNVV 642 (963)
Q Consensus 587 aD~~~eG~Dq~RgWF~s~ll~~~~~~---~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi 642 (963)
+|+-++|.|| ||. |+.+.-+. +..+ .-.+++-++.+.+|.|||||.||.+
T Consensus 181 ~dlq~GG~DQ---~~n--i~~grdl~rr~g~~~-~~~lt~PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 181 KDLQLGGSDQ---WGN--ILAGRDLIRRLGQKK-VVGLTTPLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred CCHHCCCHHH---HHH--HHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 5231187678---999--999999999808997-2899835503898881566677867
No 100
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=96.30 E-value=0.0022 Score=41.55 Aligned_cols=71 Identities=31% Similarity=0.274 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-H-----HCCC---CCEEEEECC-CC-CEECCCCCCHHCCC
Q ss_conf 354543322222333443100255444211124554443-3-----1178---400001303-78-26213453000012
Q gi|254780445|r 570 ACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLES-C-----ATRG---STPFTSLIT-HG-FSVDENGEKMSKSK 638 (963)
Q Consensus 570 g~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~-~-----~~~~---~~Pfk~v~~-hG-~vld~~G~KMSKS~ 638 (963)
|.--|+++-.---..|-||...-|.||. |++=|+- + ..+| ..| +.++. .| -+.+-+|+|||||.
T Consensus 132 GL~~YPvLmAADILly~a~~VPVGeDQ~----QHlEltRdiA~rFN~~yg~~f~~P-~~~i~~~~~~i~gldgkKMSKS~ 206 (328)
T PRK12556 132 GLYTYPILMAADILLFQATHVPVGKDQI----QHIEIARDIATYFNHTFGTTFTLP-EYVIQEEGAILPGLDGRKMSKSY 206 (328)
T ss_pred CCCCCCHHHHCHHHHCCCCEECCCCCHH----HHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCC
T ss_conf 4566507653311302664504681069----999999999999987557556786-43337654331089987655687
Q ss_pred CCCCCHH
Q ss_conf 3443336
Q gi|254780445|r 639 GNVVFPE 645 (963)
Q Consensus 639 GNvi~p~ 645 (963)
||.|...
T Consensus 207 ~n~I~L~ 213 (328)
T PRK12556 207 GNVIPLF 213 (328)
T ss_pred CCCCCCC
T ss_conf 8813476
No 101
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.24 E-value=0.0053 Score=38.92 Aligned_cols=93 Identities=27% Similarity=0.268 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHH-----CCC---CCEEEEECC-CC-CEEC--CCCCCHHC
Q ss_conf 35454332222233344310025544421112455444-331-----178---400001303-78-2621--34530000
Q gi|254780445|r 570 ACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLE-SCA-----TRG---STPFTSLIT-HG-FSVD--ENGEKMSK 636 (963)
Q Consensus 570 g~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~-~~~-----~~~---~~Pfk~v~~-hG-~vld--~~G~KMSK 636 (963)
|.-.|+++-.---..|-+|+...|.||. +++-|+ .++ .++ ..| +.++. ++ .|.+ ..|+||||
T Consensus 121 gl~~YP~lqaADIl~~~a~~VPvG~DQ~----~h~el~rdia~~fN~~yg~~f~~P-~~~~~~~~~~i~~L~~~~~KMSK 195 (325)
T PRK00927 121 GLFGYPVLMAADILLYKADLVPVGEDQK----QHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMSLQDPTKKMSK 195 (325)
T ss_pred HHHCCCHHHHHHHHHHCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1120729898888862787154342149----999999999999998714052677-55007776606789895510144
Q ss_pred CCCC---CCCHHHHHCCCCHHHHHHHHHH--CCCCCCCCCC
Q ss_conf 1234---4333664113675788788871--7876655443
Q gi|254780445|r 637 SKGN---VVFPEEIISESGADVLRYWAVN--SDYHDDQRLG 672 (963)
Q Consensus 637 S~GN---vi~p~~ii~~yGaD~lR~~~~~--~~~~~d~~~~ 672 (963)
|.|| .|...+ ..|.+|-=+.+ +|....+.++
T Consensus 196 S~~n~~s~I~l~d-----~~~~i~kKi~~a~TDs~~~i~~d 231 (325)
T PRK00927 196 SDGNDNSTINLLD-----DPKTIAKKIKKAVTDSERPIRYD 231 (325)
T ss_pred CCCCCCCEEECCC-----CHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 6799765565138-----99999999885757998775556
No 102
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=96.13 E-value=0.0014 Score=42.80 Aligned_cols=55 Identities=35% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH-----CCC---CCEEEEECCCC-CEECCCC--CCHHCCCCCC-C
Q ss_conf 344310025544421112455444331-----178---40000130378-2621345--3000012344-3
Q gi|254780445|r 584 AWPADVYLEGSDQHRGWFQHSLLESCA-----TRG---STPFTSLITHG-FSVDENG--EKMSKSKGNV-V 642 (963)
Q Consensus 584 ~~PaD~~~eG~Dq~RgWF~s~ll~~~~-----~~~---~~Pfk~v~~hG-~vld~~G--~KMSKS~GNv-i 642 (963)
.+-+|+...|.||. +|-.+...++ .++ ..| ..++..+ +++...| +|||||.+|. |
T Consensus 136 ~~~~d~vp~G~DQ~---~h~~laRdia~k~n~~~~~~~~~P-~~~~~~~~~i~~l~~g~~KMSKS~~ns~I 202 (282)
T cd00806 136 LYQADLVPVGEDQD---PHLELTRDIARRFNKLYGEIFPKP-EALISKGARIPSLTGPSKKMSKSDPNTII 202 (282)
T ss_pred HHCCCCCCCCHHHH---HHHHHHHHHHHHHHHHCCCCCCCC-HHHCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 62565052220479---999999999999865506534664-11015555166788976755568999744
No 103
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=96.02 E-value=0.0027 Score=40.98 Aligned_cols=59 Identities=29% Similarity=0.398 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCC-CCEEEEECCCCCEECCCC-------CCHHCC-CCCCCCHHH
Q ss_conf 3344310025544421112455444331-178-400001303782621345-------300001-234433366
Q gi|254780445|r 583 LAWPADVYLEGSDQHRGWFQHSLLESCA-TRG-STPFTSLITHGFSVDENG-------EKMSKS-KGNVVFPEE 646 (963)
Q Consensus 583 ~~~PaD~~~eG~Dq~RgWF~s~ll~~~~-~~~-~~Pfk~v~~hG~vld~~G-------~KMSKS-~GNvi~p~~ 646 (963)
..+.+|+.+.|.||. ++.++..-++ -++ ..| ..+.|-++.+-+| +||||| .+|.|...+
T Consensus 166 l~~~adi~~~G~DQ~---~~~~L~Rdia~rf~~~~p--~~l~~p~l~gl~g~~~~~~~~KMSkS~~~~~I~l~D 234 (333)
T PRK08560 166 FYLDVDIAVGGMDQR---KAHMLAREVLPKLGYKKP--VAIHTPLLTGLDGGGEVLAEIKMSKSKPGSAIFVHD 234 (333)
T ss_pred HHCCCCCCCCCCCHH---HHHHHHHHHHHHCCCCCC--EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 752799553154308---999999999998399997--575257545687877779988678899999474158
No 104
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.96 E-value=0.012 Score=36.35 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=20.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2255889762157785668789987670898267
Q gi|254780445|r 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNAC 95 (963)
Q Consensus 62 PPy~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl 95 (963)
||.|||.||+||+++-.+--.+||- ..|.-++
T Consensus 7 APsPtG~LHiG~~rtal~n~l~Ar~--~~G~f~L 38 (239)
T cd00808 7 APSPTGYLHIGGARTALFNYLFAKK--HGGKFIL 38 (239)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH--HCCEEEE
T ss_conf 8898985338999999999999998--1998999
No 105
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=95.84 E-value=0.0025 Score=41.17 Aligned_cols=82 Identities=24% Similarity=0.277 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HH-----HCCCC----CEEEEECCC-CCEECCCCC-CHHCC
Q ss_conf 35454332222233344310025544421112455444-33-----11784----000013037-826213453-00001
Q gi|254780445|r 570 ACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLE-SC-----ATRGS----TPFTSLITH-GFSVDENGE-KMSKS 637 (963)
Q Consensus 570 g~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~-~~-----~~~~~----~Pfk~v~~h-G~vld~~G~-KMSKS 637 (963)
|.--|+++-.-.-..|-+|+..-|.||. |++-|+ .+ ..+++ .| +.++.. |-+..-+|+ |||||
T Consensus 126 Gl~~YPvLmAADILly~a~~VPVG~DQ~----qHlELtRdiA~rfN~~yg~~~f~~P-~~~~~~~~ri~~Ldg~~KMSKS 200 (333)
T PRK12282 126 GFLTYPVSQAADITAFKATLVPVGDDQL----PMIEQTNEIVRRFNHTYGTDVLVEP-EALLPEAGRLPGLDGKAKMSKS 200 (333)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1103769860204513788076665259----9999999999999987098656886-2304545667299985010599
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 234433366411367578878887
Q gi|254780445|r 638 KGNVVFPEEIISESGADVLRYWAV 661 (963)
Q Consensus 638 ~GNvi~p~~ii~~yGaD~lR~~~~ 661 (963)
.||.|...+ ..|.+|-=+.
T Consensus 201 ~~n~I~L~D-----~~~~I~kKI~ 219 (333)
T PRK12282 201 LGNAIYLSD-----SADTIKKKVM 219 (333)
T ss_pred CCCCEECCC-----CHHHHHHHHH
T ss_conf 999621448-----9999999988
No 106
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.0048 Score=39.21 Aligned_cols=69 Identities=29% Similarity=0.281 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHH-----CCC---CCEEEEECCCC--CEECCCC-CCHHCC
Q ss_conf 35454332222233344310025544421112455444-331-----178---40000130378--2621345-300001
Q gi|254780445|r 570 ACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLE-SCA-----TRG---STPFTSLITHG--FSVDENG-EKMSKS 637 (963)
Q Consensus 570 g~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~-~~~-----~~~---~~Pfk~v~~hG--~vld~~G-~KMSKS 637 (963)
|...|+++-.-.-..|-+++..-|.||- +++=|+ .+| .++ ..| ..+.+. ++.+-+| +|||||
T Consensus 129 Gl~~YPvlqAADILl~~a~~VPVG~DQ~----qHleLtRDiA~rfn~~y~~~f~~P--~~~~~~~~~i~gL~g~~KMSkS 202 (314)
T COG0180 129 GLLTYPVLQAADILLYQATLVPVGEDQD----QHLELTRDIARRFNHLYGEVFPLP--EALISKVARLPGLDGPGKMSKS 202 (314)
T ss_pred CCHHCCHHHHHHHHHCCCCEECCCCCCH----HHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0210549988876502687510488853----999999999999874466753786--0014477746478999866666
Q ss_pred CCC-CCCH
Q ss_conf 234-4333
Q gi|254780445|r 638 KGN-VVFP 644 (963)
Q Consensus 638 ~GN-vi~p 644 (963)
.+| +|..
T Consensus 203 ~~ns~I~L 210 (314)
T COG0180 203 DPNSAIFL 210 (314)
T ss_pred CCCCEEEC
T ss_conf 99982450
No 107
>KOG4426 consensus
Probab=95.37 E-value=0.16 Score=28.71 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=39.0
Q ss_pred CCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 03782621345300001234433366411367578878887178766554431025677764
Q gi|254780445|r 621 ITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDT 682 (963)
Q Consensus 621 ~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~~~~~~d~~~~~~~l~~~~~~ 682 (963)
+.-|.||+++|+|.--.-|-+|-..++++. -.-|--...-.-++|-.++++-+.+..+.
T Consensus 435 vgFGlVLGeD~KkFkTRsgetVrL~DLLdE---g~kRs~~~Liergrdk~~tpeeL~~a~ea 493 (656)
T KOG4426 435 VGFGLVLGEDKKKFKTRSGETVRLLDLLDE---GKKRSKEKLIERGRDKVLTPEELDAAQEA 493 (656)
T ss_pred EEEEEEECCCCCCCCCCCCCEEEHHHHHHH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 133368746762000456651428988878---88889999997166654899999999998
No 108
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.26 E-value=0.0052 Score=38.96 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=20.3
Q ss_pred EECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 621345300001234433366411367578878887
Q gi|254780445|r 626 SVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV 661 (963)
Q Consensus 626 vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~ 661 (963)
+..-+|+|||||.||.|...+ ..|.+|==++
T Consensus 257 m~glDGkKMSKS~~n~I~L~D-----~~~~I~KKI~ 287 (398)
T PRK12283 257 MPGLDGQKMSKSYGNTIGLRE-----DPETVTKKIR 287 (398)
T ss_pred CCCCCCCCCCCCCCCEEECCC-----CHHHHHHHHH
T ss_conf 669998645799999755528-----9999999997
No 109
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=94.67 E-value=0.086 Score=30.53 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 25588976215778566878998767089826788882444208999999987655998334899999999999999999
Q gi|254780445|r 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWV 142 (963)
Q Consensus 63 Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i 142 (963)
|.|+|.||+|-+||=+--=.+|| ...|.-++++ | ++..+ ....+..
T Consensus 8 PSPTG~LHiGg~RTAlFNyLfAr--~~~G~F~lRi----------E---------------DTD~e-------R~~~e~~ 53 (513)
T TIGR00464 8 PSPTGYLHIGGARTALFNYLFAR--HTGGKFILRI----------E---------------DTDLE-------RNIEEAE 53 (513)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH--HCCCCEEEEE----------E---------------ECCCC-------CCCHHHH
T ss_conf 88875435336899999999998--6389379987----------5---------------36710-------0724468
Q ss_pred HHHHHHHHHCCEEEECC-------CCE-ECCCHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 99999999706077636-------981-1577679899999999999879611034
Q gi|254780445|r 143 KIQSKEFQRLGIVGDFE-------NPY-TTMTRESEAQIASELLKIAESDQIYRGI 190 (963)
Q Consensus 143 ~~~~~~~~rlG~~~Dw~-------~~y-~T~dp~y~~~~~~~F~~l~~kGliyr~~ 190 (963)
+.+.+.|+=||+..|=+ .+| -|---++|+. ...+|.++|++||=+
T Consensus 54 ~~i~e~LkWlGi~wDEs~~~gG~Y~Py~QS~R~~~Y~~---~~~~Ll~~g~AYrCY 106 (513)
T TIGR00464 54 ESILEGLKWLGISWDESVYVGGNYGPYYQSQRLDIYKK---YIKELLEEGLAYRCY 106 (513)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHH---HHHHHHHCCCCEEEE
T ss_conf 99998887458674667568986301110136789999---999997459934422
No 110
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=94.51 E-value=0.023 Score=34.50 Aligned_cols=71 Identities=23% Similarity=0.260 Sum_probs=51.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 25588976215778566878998767089826788882444208999999987655998334899999999999999999
Q gi|254780445|r 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWV 142 (963)
Q Consensus 63 Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i 142 (963)
|+++|.+|+||.+.-...+.++| +++..+.++++++.|++.... . . .....+.+
T Consensus 4 ~g~fd~~H~GH~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~-~----------~~~~~~r~ 57 (147)
T cd02156 4 PGPFDPLHLGHLRLIERADELAR------YGGDELIVIDDTDPPIKKLKG---------K-P----------LESLEERL 57 (147)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCHHHCCC---------C-C----------CCCHHHHH
T ss_conf 86048767899999999999999------769928999789991453378---------7-6----------76899999
Q ss_pred HHHHHHHHHCCEEEECC
Q ss_conf 99999999706077636
Q gi|254780445|r 143 KIQSKEFQRLGIVGDFE 159 (963)
Q Consensus 143 ~~~~~~~~rlG~~~Dw~ 159 (963)
...+..++.+|+..||.
T Consensus 58 ~~~~~~~~~~~~~~~~~ 74 (147)
T cd02156 58 EMLREALKDLGVVLDFD 74 (147)
T ss_pred HHHHHHCCCEEEEEECC
T ss_conf 99998288814998577
No 111
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=93.50 E-value=0.022 Score=34.60 Aligned_cols=68 Identities=24% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--EEE-EECCCCCEECC--CCCCHHCCCCCC-CCHH
Q ss_conf 5433222223334431002554442111245544433117840--000-13037826213--453000012344-3336
Q gi|254780445|r 573 HTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGST--PFT-SLITHGFSVDE--NGEKMSKSKGNV-VFPE 645 (963)
Q Consensus 573 ~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~--Pfk-~v~~hG~vld~--~G~KMSKS~GNv-i~p~ 645 (963)
-|+.+-.--..+.-+|+..+|.||.. -.++..-+ .++. .+| -++.|.++.+- .|.|||||..|. |+..
T Consensus 213 lYP~MQa~Di~~L~vDi~~gGmDQRK---i~mLARey--~~~~~~k~kpiil~h~mlpGL~~g~~KMSkSdp~saI~m~ 286 (399)
T PTZ00126 213 LYPCMQCADIFFLGADICQLGMDQRK---VNMLAREY--CDLKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFME 286 (399)
T ss_pred HHHHHHCCCHHHCCCCEEECCHHHHH---HHHHHHHH--HHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 31455415133056764433601999---99999998--7652887786798577776556687656668987721201
No 112
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=91.21 E-value=0.18 Score=28.31 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=28.1
Q ss_pred CCCEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 8848996282-255889762157785668789987670898267888824442
Q gi|254780445|r 53 RKNFTLHDGP-PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHG 104 (963)
Q Consensus 53 ~~~f~l~dgP-Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hG 104 (963)
++.+.++.|- | ||.||+||.+. .++ +.+++.+ |++|.+..+ |-|.
T Consensus 28 ~~~~rv~~G~~P--TG~lHLGh~v~-~~k--~~~lQd~-g~~~~~~Ia-D~hA 73 (333)
T PRK08560 28 GEEPKAYIGFEP--SGFIHLGHLVT-MNK--LADLQKA-GFKVTVLLA-DWHA 73 (333)
T ss_pred CCCCEEEECCCC--CCCCHHHHHHH-HHH--HHHHHHC-CCCEEEEEC-CCEE
T ss_conf 999889966178--98453899999-999--9999977-991899961-3223
No 113
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.11 E-value=0.31 Score=26.65 Aligned_cols=53 Identities=26% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCCCCCCCCCHH-HHHHHHHHHH--CCCCCEEEEECCCCCEECCCCCCHHCCCCCC-CC
Q ss_conf 002554442111-2455444331--1784000013037826213453000012344-33
Q gi|254780445|r 589 VYLEGSDQHRGW-FQHSLLESCA--TRGSTPFTSLITHGFSVDENGEKMSKSKGNV-VF 643 (963)
Q Consensus 589 ~~~eG~Dq~RgW-F~s~ll~~~~--~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNv-i~ 643 (963)
++..|+||---+ +.+.+..-.. +.-..| ..+-|-|+-+-+|.|||-|.+|. |.
T Consensus 208 LiP~giDQDP~fRltRDiA~r~~~~lg~~kP--a~ih~~flpgL~G~KMSsS~p~saI~ 264 (369)
T PRK12285 208 VVPVGIDQDPHIRLTRDIAERMRISLGFIKP--ASTYHKFMTGLTGGKMSSSKPESAIY 264 (369)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCC--HHHHCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 6540345446889999888874011488872--77751145677889876899985368
No 114
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=90.08 E-value=0.25 Score=27.30 Aligned_cols=44 Identities=18% Similarity=0.356 Sum_probs=29.4
Q ss_pred CCEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCC
Q ss_conf 848996282-255889762157785668789987670898267888-8244420
Q gi|254780445|r 54 KNFTLHDGP-PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVP-GWDCHGL 105 (963)
Q Consensus 54 ~~f~l~dgP-Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~-GwD~hGL 105 (963)
++|.++.|- | ||+||+||... + -.+.+++.. |++|.... || |++
T Consensus 4 k~~~vy~G~~P--Tg~lHlGhl~~-~--~~~~~lq~~-g~~~~~liad~--~a~ 49 (291)
T pfam00579 4 RPLRVYTGFDP--TGPLHLGYLVP-L--MKLVQFQQA-GHEVFFLIGDL--TAI 49 (291)
T ss_pred CCCEEEEEECC--CCHHHHHHHHH-H--HHHHHHHHC-CCCEEEEECCC--EEE
T ss_conf 98189973488--96307798999-9--999999978-99099997383--313
No 115
>KOG0435 consensus
Probab=89.29 E-value=0.045 Score=32.44 Aligned_cols=36 Identities=28% Similarity=0.547 Sum_probs=29.2
Q ss_pred CCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf 1132101320333310236630224554236899998752000
Q gi|254780445|r 431 PHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKI 473 (963)
Q Consensus 431 P~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v 473 (963)
.-.|||+.+|+-+...||||++. ....++++.++..
T Consensus 199 G~SWRSGA~VEkK~LrQWfiktt-------aYAk~L~d~L~~L 234 (876)
T KOG0435 199 GCSWRSGAKVEKKKLRQWFIKTT-------AYAKRLLDGLETL 234 (876)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_conf 75534565465778888986316-------8899999998750
No 116
>KOG2145 consensus
Probab=87.36 E-value=0.51 Score=25.18 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=13.8
Q ss_pred EEECCCC-CEECCCC--CCHHCCCCCC
Q ss_conf 0130378-2621345--3000012344
Q gi|254780445|r 618 TSLITHG-FSVDENG--EKMSKSKGNV 641 (963)
Q Consensus 618 k~v~~hG-~vld~~G--~KMSKS~GNv 641 (963)
|-.+.|- |.-+-+| .|||-|.-|.
T Consensus 260 Kpali~stffpaLqG~~~KMSASdpns 286 (397)
T KOG2145 260 KPALIHSTFFPALQGAQTKMSASDPNS 286 (397)
T ss_pred CCCEEEHHHCHHHHCCCCCCCCCCCCC
T ss_conf 842100110212107544555679974
No 117
>TIGR00467 lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and some eubacteria . Moreover in some eubacteria there is a gene X, which is similar to a part of lysyl-tRNA synthetase from class II. Lysyl-tRNA synthetase is duplicated in some species with, for example in E. coli, as a constitutive gene (lysS) and an induced one (lysU). A refined crystal structures shows that the active site of lysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding .; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=85.06 E-value=1.4 Score=22.17 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=61.7
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHH-HCCCCCEEEEECCCCCEECC--CCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 1002554442--111245544433-11784000013037826213--453000012344333664113675788788871
Q gi|254780445|r 588 DVYLEGSDQH--RGWFQHSLLESC-ATRGSTPFTSLITHGFSVDE--NGEKMSKSKGNVVFPEEIISESGADVLRYWAVN 662 (963)
Q Consensus 588 D~~~eG~Dq~--RgWF~s~ll~~~-~~~~~~Pfk~v~~hG~vld~--~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~ 662 (963)
++-.-|+|.+ .|=|.+.....- ...+.+|+. +...-.-+.. .|-+||.|.|.++...++++-+..+++|+.++.
T Consensus 233 ~~~p~g~d~~~~gg~~d~~~~~~~~~~~~~pp~~-~~~~~~~~~~gd~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~ 311 (539)
T TIGR00467 233 TFEPAGKDHAAAGGSYDTGVLIAKEIFDYEPPYP-VPYEWISLKGGDKGGPLSSSKGDVLPVKDWLEVYPPEILRFLLLR 311 (539)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-EEEEEEEEECCCCCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHH
T ss_conf 1043675200157641024678888750578842-023245650254233232345632323345442143575554531
Q ss_pred CCC--CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 787--6655443102567776400000
Q gi|254780445|r 663 SDY--HDDQRLGKNIIQTNIDTYRKLR 687 (963)
Q Consensus 663 ~~~--~~d~~~~~~~l~~~~~~~~kl~ 687 (963)
+.+ ...+.|+...+....+.+.++.
T Consensus 312 ~~p~~~~~~~~d~~~~~d~~~~~d~~~ 338 (539)
T TIGR00467 312 TKPNTEKHIDFDLGKIPDLGDDYDKLE 338 (539)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 167752122024023235677777777
No 118
>KOG2623 consensus
Probab=76.88 E-value=1.6 Score=21.80 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHC-----CC-CCEEEEECCCCCEECCCCCCHHCCCCCCCCHH
Q ss_conf 443100255444211124554443311-----78-40000130378262134530000123443336
Q gi|254780445|r 585 WPADVYLEGSDQHRGWFQHSLLESCAT-----RG-STPFTSLITHGFSVDENGEKMSKSKGNVVFPE 645 (963)
Q Consensus 585 ~PaD~~~eG~Dq~RgWF~s~ll~~~~~-----~~-~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~ 645 (963)
+-+.+-++|+||.- + ++.++-+ .. ..+|- ++--++.++.|.|..||.||.|+.+
T Consensus 226 ~g~~~QlGGsDQwG---N--itaG~dlI~ki~~~~~~vfG--lT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623 226 YGCRFQLGGSDQWG---N--ITAGTDLIRKIMPIQAFVFG--LTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred CCEEEEECCCCCCC---C--CCHHHHHHHHHCCCCCCEEE--EEEEEEECCCCHHHCCCCCCEEEEC
T ss_conf 48569851643236---6--22078999985203134003--5665576575113234778628846
No 119
>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=70.84 E-value=2.2 Score=20.75 Aligned_cols=18 Identities=44% Similarity=0.617 Sum_probs=13.3
Q ss_pred EECCCC--CCHHCCCCC---CCC
Q ss_conf 621345--300001234---433
Q gi|254780445|r 626 SVDENG--EKMSKSKGN---VVF 643 (963)
Q Consensus 626 vld~~G--~KMSKS~GN---vi~ 643 (963)
+++-+| +|||||.=| +|-
T Consensus 214 l~gl~~P~kKMSkS~p~~~~~If 236 (366)
T TIGR00233 214 LMGLQGPKKKMSKSDPNQNSAIF 236 (366)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 66878785355556788882020
No 120
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=67.64 E-value=2.3 Score=20.64 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCC
Q ss_conf 00033354543322--------22233344310025544
Q gi|254780445|r 565 VWFDSACTHTILLG--------KDPKLAWPADVYLEGSD 595 (963)
Q Consensus 565 vWfDSg~s~~~~~~--------~~~~~~~PaD~~~eG~D 595 (963)
|+||| .+|...+ +=|+.-+||||++-|.=
T Consensus 204 VFLdS--AYY~s~~pniP~hI~dIFqnGlPADFRLiGAT 240 (532)
T TIGR02902 204 VFLDS--AYYSSEDPNIPSHIRDIFQNGLPADFRLIGAT 240 (532)
T ss_pred CHHHC--CCCCCCCCCCCHHHHHHHCCCCCCCEECCCCC
T ss_conf 00001--23587778654278997206787340121333
No 121
>KOG2713 consensus
Probab=66.55 E-value=2.8 Score=19.99 Aligned_cols=67 Identities=27% Similarity=0.281 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHH-----CCCC----CEEEEECCCCC--E--ECCCCCCHHC
Q ss_conf 545433222223334431002554442111245544-4331-----1784----00001303782--6--2134530000
Q gi|254780445|r 571 CTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLL-ESCA-----TRGS----TPFTSLITHGF--S--VDENGEKMSK 636 (963)
Q Consensus 571 ~s~~~~~~~~~~~~~PaD~~~eG~Dq~RgWF~s~ll-~~~~-----~~~~----~Pfk~v~~hG~--v--ld~~G~KMSK 636 (963)
+--|+++-.-.-..|.++...-|.||. |++-| .+.+ .++. .| ..++.+|. | |-.--+||||
T Consensus 140 LftYPvLqAADILLYksThVPVGeDQs----QHleL~r~lA~~fN~~Y~~~~fpvP-~~il~~~~~rV~SL~dpekKMSK 214 (347)
T KOG2713 140 LFTYPVLQAADILLYKSTHVPVGEDQS----QHLELARHLAQAFNKTYGTEIFPVP-EQILRQSHARVMSLRDPEKKMSK 214 (347)
T ss_pred EECCHHHHHHHHHHHCCCCCCCCCCHH----HHHHHHHHHHHHHHHHCCCEEECCC-HHHHHHHHHHHHHCCCHHHHCCC
T ss_conf 131246766557650365346773189----9999999999998653267332475-88876664544212683554145
Q ss_pred CCCCCC
Q ss_conf 123443
Q gi|254780445|r 637 SKGNVV 642 (963)
Q Consensus 637 S~GNvi 642 (963)
|-+|--
T Consensus 215 Sd~n~~ 220 (347)
T KOG2713 215 SDPNPK 220 (347)
T ss_pred CCCCCC
T ss_conf 799975
No 122
>KOG2144 consensus
Probab=64.57 E-value=2.4 Score=20.56 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCCCCCC-HHHHHHHHHHHHCCCCCEEEEECCCCCEECCC-CCCHHCCCCCC
Q ss_conf 33344310025544421-11245544433117840000130378262134-53000012344
Q gi|254780445|r 582 KLAWPADVYLEGSDQHR-GWFQHSLLESCATRGSTPFTSLITHGFSVDEN-GEKMSKSKGNV 641 (963)
Q Consensus 582 ~~~~PaD~~~eG~Dq~R-gWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~-G~KMSKS~GNv 641 (963)
+.+.-+|...+|.||-. |=|..-.+..... +- +-.+.|-||-+-. |.|||+|--|.
T Consensus 173 e~~L~vD~qfgGvDQRKIf~~A~eylp~l~y--kK--rihLmnpMvPGL~q~~KMSsSd~~S 230 (360)
T KOG2144 173 EFYLEVDAQFGGVDQRKIFVLAEEYLPDLGY--KK--RIHLMNPMVPGLAQGEKMSSSDPLS 230 (360)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CC--CEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 9987303775481199999999986154176--65--5232377785534457666678523
No 123
>KOG3361 consensus
Probab=62.23 E-value=2.6 Score=20.25 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=15.2
Q ss_pred CCCCCCCCCCEEEEECCCC
Q ss_conf 2233224454056405789
Q gi|254780445|r 333 EYVANDCGTGFVHVAPSHG 351 (963)
Q Consensus 333 d~V~~~~GTG~Vh~aPahg 351 (963)
|--+++.|||+| .|||.|
T Consensus 47 dK~dpnVGtGlV-GAPACG 64 (157)
T KOG3361 47 DKNDPNVGTGLV-GAPACG 64 (157)
T ss_pred CCCCCCCCCCCC-CCCCCC
T ss_conf 789997655553-576522
No 124
>KOG1315 consensus
Probab=61.88 E-value=3.2 Score=19.65 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=3.4
Q ss_pred HHHHHHHHHC
Q ss_conf 8999999863
Q gi|254780445|r 798 FTAEEAWLSL 807 (963)
Q Consensus 798 ~~aEEiw~~l 807 (963)
+++=.+|.-+
T Consensus 212 ~l~~h~~Li~ 221 (307)
T KOG1315 212 LLCFHTYLIL 221 (307)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 125
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro: IPR011981 This enzyme catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. The substrate, 3,4-dihydroxyphenylacetate (homoprotocatechuate) arises from the action of a hydroxylase on 4-hydroxyphenylacetate. The aromatic ring is opened by this dioxygenase exo to the 3,4-diol resulting in 2-hydroxy-5-carboxymethylmuconate semialdehyde..
Probab=58.27 E-value=3.2 Score=19.65 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=8.1
Q ss_pred CCCCCCCCCEE
Q ss_conf 11234567225
Q gi|254780445|r 497 SRQRNWGVPIC 507 (963)
Q Consensus 497 SRqR~WG~PIP 507 (963)
-||++||.|+|
T Consensus 294 ~R~~lWG~p~p 304 (312)
T TIGR02295 294 QRQTLWGHPAP 304 (312)
T ss_pred HCCCCCCCCCC
T ss_conf 00002588888
No 126
>TIGR02414 pepN_proteo aminopeptidase N; InterPro: IPR012779 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, 3.4.11.2 from EC, after the Escherichia coli enzyme, suggesting a similar activity profile (see P04825 from SWISSPROT for a description of catalytic activity). This family of zinc metallopeptidases belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA); the majority are identified as alanyl aminopeptidases (proteobacteria) that are closely related to Escherichia coli PepN and presumed to have a similar (not identical) function. Nearly all are found in proteobacteria, but members are found also in cyanobacteria, plants, and apicomplexan parasites , . This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (IPR012778 from INTERPRO) and from the membrane bound aminopeptidase N family in animals.; GO: 0004179 membrane alanyl aminopeptidase activity, 0008270 zinc ion binding.
Probab=58.00 E-value=3.8 Score=19.15 Aligned_cols=108 Identities=15% Similarity=0.302 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCCE---EEEECCCCHH-HH-----HHHHHCCCHHHHHCCCEEEEECC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 144322332244540---5640578988-98-----99876052122100220343023--4455102431001786321
Q gi|254780445|r 329 LIDAEYVANDCGTGF---VHVAPSHGVE-DF-----TAWNEAKDILLNRSVDIKVPSPV--DGRGFYTTEAPGFSGARVL 397 (963)
Q Consensus 329 i~~~d~V~~~~GTG~---Vh~aPahg~~-Dy-----~~~~~~~~~~~~~~~~l~~~~~v--d~~G~~~~~~~~~~G~~v~ 397 (963)
++.+.|+|+=+|=-| ||+-|+.-.. +| .-+++.-....|+.|+|.++.+| |+ |+..+-|-.|+.||
T Consensus 193 ~~~D~F~T~YSGR~V~L~~yve~g~~~k~~~Am~SLKkaMkWDE~~FGlEYDLD~fMIVAV~D---FNmGAMENKGLNIF 269 (898)
T TIGR02414 193 VLEDTFTTQYSGREVALRIYVEEGNEDKCDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDD---FNMGAMENKGLNIF 269 (898)
T ss_pred EEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECC---CCCCCCCCCCCHHH
T ss_conf 676677860017457788874136677157999999986211265607500147544677455---68744014650256
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCC-HHHHCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 1355444567545235664798210-000001221132101320333310236
Q gi|254780445|r 398 DDAGEKGNANEVVIAALINACAILN-RSIVKHSYPHSWRSKKPIIFRTTSQWF 449 (963)
Q Consensus 398 ~~~~~~~~a~~~ii~~L~e~g~l~~-~~~~~H~yP~cwR~~~pii~r~~~QWF 449 (963)
+.+.....+.-+.=... .. +..|-|-|=|=| ||+-|=. -=||
T Consensus 270 Ns~~VLA~p~TATD~dy------~~IEsViaHEYFHNW-tGNRVTC---RDWF 312 (898)
T TIGR02414 270 NSKYVLADPETATDADY------ERIESVIAHEYFHNW-TGNRVTC---RDWF 312 (898)
T ss_pred HHHHHHCCCCCCCCHHH------CCCCEEEEEEEECCC-CCCCEEE---CCHH
T ss_conf 34645068888653222------010012313320168-8982431---3121
No 127
>PRK09429 mepA penicillin-insensitive murein endopeptidase; Reviewed
Probab=57.92 E-value=3.5 Score=19.37 Aligned_cols=13 Identities=54% Similarity=0.948 Sum_probs=9.8
Q ss_pred CCCCCCCCCCEEE
Q ss_conf 0112345672258
Q gi|254780445|r 496 LSRQRNWGVPICF 508 (963)
Q Consensus 496 ISRqR~WG~PIPi 508 (963)
.||+|+||+|.-|
T Consensus 59 ~sRnR~wGHP~lI 71 (270)
T PRK09429 59 LSRNRYWGHPDLI 71 (270)
T ss_pred CCCCCCCCCHHHH
T ss_conf 4457677874999
No 128
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA. This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- = Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA = Malonyl-CoA + Biotin carrier protein In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA.; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=57.28 E-value=2.5 Score=20.44 Aligned_cols=14 Identities=14% Similarity=0.031 Sum_probs=7.0
Q ss_pred CCCCCCCCCCHHHE
Q ss_conf 57435736500210
Q gi|254780445|r 196 SIAEQTTLAEAEIE 209 (963)
Q Consensus 196 ~p~~~T~La~~Eve 209 (963)
||+|+.++=..|+.
T Consensus 36 Cp~C~~~~Y~keL~ 49 (292)
T TIGR00515 36 CPKCGQLLYTKELQ 49 (292)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 44243443466530
No 129
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases; InterPro: IPR011833 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins in this entry are glycosyltransferases with phosphorylase activities. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) . GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 800f its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels . There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that 'regardless of the a or b form, GPase functions as a dimer in vivo . The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain . The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments . The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible .; GO: 0004645 phosphorylase activity, 0030170 pyridoxal phosphate binding, 0005975 carbohydrate metabolic process.
Probab=56.37 E-value=12 Score=15.79 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCH
Q ss_conf 99999999999999999973899974440389982968
Q gi|254780445|r 836 GKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDS 873 (963)
Q Consensus 836 ~~l~~ir~~V~~~le~~R~~k~I~~slea~v~i~~~d~ 873 (963)
-....|.+.||.+-+.-..+..|+..|. ++.+++-
T Consensus 602 ~~AK~IIKLIN~VA~vVNnDP~V~~~LK---VVF~pNY 636 (822)
T TIGR02093 602 HMAKLIIKLINSVAEVVNNDPAVGDKLK---VVFVPNY 636 (822)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHCCCEE---EEEECCC
T ss_conf 8888999999878997137840679115---8983278
No 130
>pfam03411 Peptidase_M74 Penicillin-insensitive murein endopeptidase.
Probab=55.11 E-value=4.1 Score=18.90 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=8.5
Q ss_pred CCCCCCCCCCEEE
Q ss_conf 0112345672258
Q gi|254780445|r 496 LSRQRNWGVPICF 508 (963)
Q Consensus 496 ISRqR~WG~PIPi 508 (963)
.||+|+||+|.-|
T Consensus 29 ~sRnR~wGHP~lI 41 (240)
T pfam03411 29 TDRNRYFGHPDMI 41 (240)
T ss_pred CCCCCCCCCHHHH
T ss_conf 6566677887999
No 131
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=53.27 E-value=5.6 Score=17.95 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=25.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 8999817885285217546744788563530378899
Q gi|254780445|r 914 SVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAA 950 (963)
Q Consensus 914 ~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~ 950 (963)
...|+.-.|..|+||-.-...+....--.-.|++|..
T Consensus 247 ~~~Vy~r~g~~C~~Cg~~I~~~~~~gR~t~~CP~CQk 283 (283)
T PRK13945 247 QAWVYRRTGQPCRKCGTPIERIKLAGRSTHWCPNCQK 283 (283)
T ss_pred EEEEECCCCCCCCCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 3889678989489999888899999975788921149
No 132
>PRK10658 alpha-xylosidase YicI; Provisional
Probab=53.21 E-value=13 Score=15.45 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=9.6
Q ss_pred HHHHCCHHHHHHHHHHHHC
Q ss_conf 9997000448999999863
Q gi|254780445|r 789 IIWIAPILPFTAEEAWLSL 807 (963)
Q Consensus 789 ~~lLaPi~P~~aEEiw~~l 807 (963)
++|=.=.||++-..+++..
T Consensus 563 i~LRyrLlPYLYsla~eA~ 581 (772)
T PRK10658 563 TKLKCRLMPYLYREAAEAN 581 (772)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999988999999999987
No 133
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=50.51 E-value=5.8 Score=17.84 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.9
Q ss_pred EECCCCEEEECCCCCC
Q ss_conf 1103430220574357
Q gi|254780445|r 186 IYRGIKPIMWSIAEQT 201 (963)
Q Consensus 186 iyr~~~pV~w~p~~~T 201 (963)
=|+..+|..|||.|+-
T Consensus 8 dy~~~~~~~WCpGCG~ 23 (286)
T PRK11866 8 DYAVKRPPIWCPGCGN 23 (286)
T ss_pred HCCCCCCCCCCCCCCC
T ss_conf 8088999866899971
No 134
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=50.41 E-value=4 Score=19.01 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCCCC
Q ss_conf 456642100003335454332-------------------2222333443100
Q gi|254780445|r 557 IQSKDILDVWFDSACTHTILL-------------------GKDPKLAWPADVY 590 (963)
Q Consensus 557 ~r~~DvlDvWfDSg~s~~~~~-------------------~~~~~~~~PaD~~ 590 (963)
+....||--||-|||-|.-+- ..-..++||+.+|
T Consensus 2 KqkqeT~~~WfkSGsPWiWltagaVSIslia~iGlllvia~rGl~yFWPapv~ 54 (289)
T COG4985 2 KQKQETMLNWFKSGSPWIWLTAGAVSISLIAVIGLLLVIAWRGLTYFWPAPVL 54 (289)
T ss_pred CCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHE
T ss_conf 62268999986279970887442357799999999999986254430576120
No 135
>KOG0614 consensus
Probab=49.79 E-value=13 Score=15.37 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=30.0
Q ss_pred CCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHC
Q ss_conf 110000005788654453227767458998306653111123743551211188888760
Q gi|254780445|r 235 QIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQT 294 (963)
Q Consensus 235 ~~~iwTTrP~Tl~~n~ai~v~p~~~Y~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~ 294 (963)
--++.|-.|+|+||-.||..|-.-+-. |+ ...+-+.|.+..+....++...
T Consensus 212 g~ll~~m~~gtvFGELAILynctRtAs-V~--------alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614 212 GKLLGKMGAGTVFGELAILYNCTRTAS-VR--------ALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCHHH-HH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 766631477214567899857843231-56--------6531047777799999999998
No 136
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=48.87 E-value=5.7 Score=17.93 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHCCCEECCCCEEEECCCCCCCCCCH
Q ss_conf 998796110343022057435736500
Q gi|254780445|r 180 IAESDQIYRGIKPIMWSIAEQTTLAEA 206 (963)
Q Consensus 180 l~~kGliyr~~~pV~w~p~~~T~La~~ 206 (963)
|.+++-.+-|.-|++||-.|+-+|-..
T Consensus 1 ~~kk~~~~~gk~~iyWCe~cNlPl~~~ 27 (202)
T COG5270 1 MRKKMPVVLGKFPIYWCEKCNLPLLGR 27 (202)
T ss_pred CCCCCCEEECCCCEEEHHHCCCCCCCC
T ss_conf 975553030543064132288743555
No 137
>KOG2916 consensus
Probab=47.52 E-value=13 Score=15.34 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=4.3
Q ss_pred CHHHCCCHHH
Q ss_conf 0101020122
Q gi|254780445|r 755 FYFDIRKDSL 764 (963)
Q Consensus 755 ~Yld~~Kdrl 764 (963)
-|+|++|.|.
T Consensus 81 GYIDLSkrrV 90 (304)
T KOG2916 81 GYIDLSKRRV 90 (304)
T ss_pred CCEECHHCCC
T ss_conf 7066213138
No 138
>TIGR02919 TIGR02919 conserved hypothetical protein TIGR02919; InterPro: IPR014268 Members of this entry are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus..
Probab=47.23 E-value=16 Score=14.83 Aligned_cols=43 Identities=16% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf 52000002444343202443043200001123456722589825884732521
Q gi|254780445|r 469 EVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKA 521 (963)
Q Consensus 469 ~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~ 521 (963)
-+++|+|+-+.||-|+.+.- |+.=||.++. .|+.++++++..+
T Consensus 103 ~V~~VeWlD~~grvr~vD~Y-Nk~G~~FA~T---------~yd~~~~~IlK~Y 145 (448)
T TIGR02919 103 IVKEVEWLDKKGRVRYVDYY-NKFGFKFAQT---------VYDANGKAILKRY 145 (448)
T ss_pred CEEEEEEECCCCCEEEEEEE-CCCCEEEEEE---------EEECCCCEEEEEE
T ss_conf 10043235689888899875-2677158888---------8602588134156
No 139
>PRK01103 formamidopyrimidine-DNA glycosylase; Validated
Probab=47.14 E-value=7 Score=17.28 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=24.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 8999817885285217546744788563530378899
Q gi|254780445|r 914 SVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAA 950 (963)
Q Consensus 914 ~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~ 950 (963)
...|+--.|..||||-.-........--.-.|++|.+
T Consensus 236 ~~~Vy~r~g~~C~~Cg~~I~~~~~~gR~t~~CP~CQk 272 (273)
T PRK01103 236 SLQVYGREGEPCRRCGTPIEKIKQGGRSTFFCPKCQK 272 (273)
T ss_pred EEEECCCCCCCCCCCCCEEEEEEECCCCCEECCCCCC
T ss_conf 5788088989489999967899988971199957618
No 140
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase; InterPro: IPR010030 This entry identifies a family of uncharacterised plant-specific FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (1.3.2.3 from EC) from higher plants, D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae, and L-gulonolactone oxidase (1.1.3.8 from EC) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown..
Probab=46.79 E-value=9.2 Score=16.47 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHH-----CCCCCCCCCCCCH
Q ss_conf 5542368999987520-----0000244434320
Q gi|254780445|r 456 LGDGSTLRSRALSEVE-----KIRFFPSSGKNRL 484 (963)
Q Consensus 456 ~~~~~~~k~~~l~~i~-----~v~~~P~~~k~r~ 484 (963)
..++.++.+++.+.-. +|.|+|.++|.-+
T Consensus 231 ~r~D~~l~D~~~~fG~~hEFADi~WyPS~~~aVY 264 (577)
T TIGR01677 231 FRDDSDLEDQFVKFGKKHEFADITWYPSQGKAVY 264 (577)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEECCCCCEEEE
T ss_conf 2576057889999743143431232488971788
No 141
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=44.49 E-value=17 Score=14.65 Aligned_cols=44 Identities=27% Similarity=0.470 Sum_probs=26.8
Q ss_pred CCCCCCCC-CCCEEEEE-CCCCH----HHHHHHHHCCCHHHHHCCCEEEEECCCCCCCC
Q ss_conf 32233224-45405640-57898----89899876052122100220343023445510
Q gi|254780445|r 332 AEYVANDC-GTGFVHVA-PSHGV----EDFTAWNEAKDILLNRSVDIKVPSPVDGRGFY 384 (963)
Q Consensus 332 ~d~V~~~~-GTG~Vh~a-Pahg~----~Dy~~~~~~~~~~~~~~~~l~~~~~vd~~G~~ 384 (963)
+-||..+. -||+||+. =+||. .|+. -++.+....++ .||++|+.
T Consensus 20 GAFV~l~~g~tGLVHISEIa~~fVkdI~d~L--------~vG~eV~vKVl-~ide~GKi 69 (129)
T COG1098 20 GAFVELEGGKTGLVHISEIADGFVKDIHDHL--------KVGQEVKVKVL-DIDENGKI 69 (129)
T ss_pred CEEEEECCCCCCEEEEHHHHHHHHHHHHHHH--------CCCCEEEEEEE-EECCCCCC
T ss_conf 3489823997314883575443677399884--------27887999997-21468970
No 142
>PRK10445 endonuclease VIII; Provisional
Probab=44.46 E-value=12 Score=15.57 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=24.1
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 899981788528521754674478856353037889
Q gi|254780445|r 914 SVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDA 949 (963)
Q Consensus 914 ~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC~ 949 (963)
...|+.-.|..|+||-.-........--.-.|++|.
T Consensus 227 ~~~Vy~R~g~~C~~Cg~~I~~~~~~gRst~~Cp~CQ 262 (263)
T PRK10445 227 RFKVFHRDGEACERCGGIIEKTTLSSRPFYWCPGCQ 262 (263)
T ss_pred EEEEECCCCCCCCCCCCEEEEEEECCCCCEECCCCC
T ss_conf 689967797938999976279998898788795648
No 143
>KOG1763 consensus
Probab=42.93 E-value=14 Score=15.26 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=17.7
Q ss_pred EEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCC
Q ss_conf 00013037826213453000012344333664113
Q gi|254780445|r 616 PFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISE 650 (963)
Q Consensus 616 Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~ 650 (963)
-|+.-+.-|+||-.+-+||-|+. -|+..++|+.
T Consensus 185 ~YrHaLP~GyVLk~dkkk~ek~~--eISlEe~IE~ 217 (343)
T KOG1763 185 IYRHALPEGYVLKRDKKKLEKQD--EISLEELIEK 217 (343)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC--CCCHHHHHHH
T ss_conf 43214786201033665331464--3329999999
No 144
>KOG0616 consensus
Probab=42.47 E-value=19 Score=14.34 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCE
Q ss_conf 989999999999987961103430
Q gi|254780445|r 169 SEAQIASELLKIAESDQIYRGIKP 192 (963)
Q Consensus 169 y~~~~~~~F~~l~~kGliyr~~~p 192 (963)
|-+.+.-++.-|+.+++|||+.+|
T Consensus 149 YAAeivlAleylH~~~iiYRDLKP 172 (355)
T KOG0616 149 YAAEIVLALEYLHSLDIIYRDLKP 172 (355)
T ss_pred HHHHHHHHHHHHHHCCEEECCCCH
T ss_conf 899999999998746736436887
No 145
>pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Probab=42.41 E-value=19 Score=14.33 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCCCCH---HHHHHHHHHHHHHHH
Q ss_conf 27888754368999999889876540122668899878630240010102012227899808---999999999999999
Q gi|254780445|r 711 PALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSL---KRLSSIAVIRILCRH 787 (963)
Q Consensus 711 ~~~DkwiLskl~~~i~~v~~~~e~~~f~~a~~~i~~F~~~dLS~~Yld~~Kdrly~~~~~s~---~R~s~~~~L~~il~~ 787 (963)
.+.++-++..+..+-..+..+.++++.|..+.-+++++. .+++||=+ .+ . -+.+.. .|.........++..
T Consensus 31 ~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~-~f~~fY~~-~~--I--l~~~~~~~~~RL~L~~~~~~vl~~ 104 (117)
T pfam05746 31 EEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLAS-AFHSFYNN-CR--V--LDEDDEERNARLALLKAVRQVLKN 104 (117)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHH-CC--C--CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999880529999999986686999999999999-99999971-96--7--489889999999999999999999
Q ss_pred HHHHHC
Q ss_conf 999970
Q gi|254780445|r 788 LIIWIA 793 (963)
Q Consensus 788 l~~lLa 793 (963)
-+.+|.
T Consensus 105 gl~lLG 110 (117)
T pfam05746 105 GLDLLG 110 (117)
T ss_pred HHHHHC
T ss_conf 978619
No 146
>pfam03371 PRP38 PRP38 family. Members of this family are related to the pre mRNA splicing factor PRP38 from yeast. Therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation.
Probab=42.40 E-value=11 Score=16.02 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=24.3
Q ss_pred HHHHHHHHCCCCCCCCCC---CCHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 999875200000244434---320244304320000112345672258
Q gi|254780445|r 464 SRALSEVEKIRFFPSSGK---NRLRSMIENRPDWLLSRQRNWGVPICF 508 (963)
Q Consensus 464 ~~~l~~i~~v~~~P~~~k---~r~~~~i~~~~DW~ISRqR~WG~PIPi 508 (963)
+..+.--+++...+..|. -.+..|+ ||++..+|+||+++|-
T Consensus 117 ep~l~D~rklr~~~~~g~~~~~~mde~v----d~LL~~~~~~~~~LPr 160 (173)
T pfam03371 117 EPYLQDYRKLRPKLGDGDFKLTHMDEFV----DDLLTKDRVCDTILPR 160 (173)
T ss_pred HHHHCCHHHEEEECCCCCEEEEEHHHHH----HHHHCCCCEECCCCCC
T ss_conf 9985473334354489964677899999----9996018685353799
No 147
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=42.12 E-value=19 Score=14.30 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCC----CCCCEE
Q ss_conf 517841001111128575431378665125511443223322----445405
Q gi|254780445|r 297 KIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVAND----CGTGFV 344 (963)
Q Consensus 297 ~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~V~~~----~GTG~V 344 (963)
+..++.++.|..=.|-++.. .+..+.+-+++.-++..+ -|.|+|
T Consensus 26 ~~d~VvR~qGG~NAGHTvvv----~g~~~~LhLiPSGil~~~~~~vIGnGvV 73 (430)
T COG0104 26 RADVVVRYQGGHNAGHTVVV----NGEKYKLHLIPSGILRPGATLVIGNGVV 73 (430)
T ss_pred CCCEEEECCCCCCCCCEEEE----CCEEEEEEECCCCCCCCCCEEEECCCEE
T ss_conf 86789982687888727998----9999999966644567996588638678
No 148
>KOG0598 consensus
Probab=41.36 E-value=19 Score=14.23 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=29.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCHHCCC--CCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 55444211124554443311784000013037826213453000012--3443336641136757887888
Q gi|254780445|r 592 EGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSK--GNVVFPEEIISESGADVLRYWA 660 (963)
Q Consensus 592 eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~--GNvi~p~~ii~~yGaD~lR~~~ 660 (963)
+|.|.---|-.--.++.-+++|.+||- +++-.||.++. |-.+.|...+..-+-|.++-.+
T Consensus 200 ~gy~~~vDWWsLGillYeML~G~pPF~---------~~~~~~~~~~I~~~k~~~~p~~ls~~ardll~~LL 261 (357)
T KOG0598 200 KGYDKAVDWWSLGILLYEMLTGKPPFY---------AEDVKKMYDKILKGKLPLPPGYLSEEARDLLKKLL 261 (357)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCC---------CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 797863126667899999842889876---------73478999998607677888657988999999986
No 149
>TIGR00018 panC pantoate--beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis . Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway .; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process.
Probab=41.05 E-value=9.4 Score=16.39 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE--CCCCCEECCCCCCHHCCCCCCCCHH
Q ss_conf 222333443100255444211124554443311784000013--0378262134530000123443336
Q gi|254780445|r 579 KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSL--ITHGFSVDENGEKMSKSKGNVVFPE 645 (963)
Q Consensus 579 ~~~~~~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v--~~hG~vld~~G~KMSKS~GNvi~p~ 645 (963)
|-|+.=-|-==|.+-|| +|=+++.-.++.+- |=+| ..=-.|++++|=-|| |...+.+|.
T Consensus 145 KLFnlV~Pd~AYFG~KD-----~QQla~i~~lV~Dl--~~di~i~~~~iVR~~dGLAlS-SRN~YL~a~ 205 (310)
T TIGR00018 145 KLFNLVKPDVAYFGKKD-----AQQLAVIRKLVKDL--FLDIEIVPVPIVREEDGLALS-SRNVYLTAE 205 (310)
T ss_pred EHHCCCCCCCCCCCCCH-----HHHHHHHHHHHHHH--CCCEEEEEEEEEECCCCCEEC-CCCCCCCHH
T ss_conf 10031674510047743-----88999999999873--463087633056348884120-147667866
No 150
>TIGR00357 TIGR00357 methionine-R-sulfoxide reductase; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine . It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set , . The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A . The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N-terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity.
Probab=40.54 E-value=8.1 Score=16.84 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=5.6
Q ss_pred CCCCCCCCCC
Q ss_conf 0333545433
Q gi|254780445|r 567 FDSACTHTIL 576 (963)
Q Consensus 567 fDSg~s~~~~ 576 (963)
||||+=|-+|
T Consensus 57 FdSGcGWPSF 66 (135)
T TIGR00357 57 FDSGCGWPSF 66 (135)
T ss_pred CCCCCCCCCC
T ss_conf 3587879652
No 151
>pfam09778 Guanylate_cyc_2 Guanylyl cyclase. Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=40.12 E-value=20 Score=14.10 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=34.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH----HHHHCCEEEECCCCEEC----CCHH
Q ss_conf 888244420899999998765599833489999999999999999999999----99970607763698115----7767
Q gi|254780445|r 97 VPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSK----EFQRLGIVGDFENPYTT----MTRE 168 (963)
Q Consensus 97 ~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~----~~~rlG~~~Dw~~~y~T----~dp~ 168 (963)
...||| ||.-=.-|.+.++.. +. ..+|.+.|++... ...+|.- -|+++|+..- |.| .+|.
T Consensus 7 ~~~WDC-GLACv~MvLr~~~~~-----~~-~~~~~~~c~e~~~-t~SiWTIDLayLL~~fgV~h~----f~T~TlGvnp~ 74 (212)
T pfam09778 7 RYHWDC-GLACVLMVLRTLGRD-----SE-LTEFEEICCELGF-TTSIWTIDLAYLLKKFGVRHS----YFTQTLGANPN 74 (212)
T ss_pred CCCCCH-HHHHHHHHHHHHCHH-----HH-HHHHHHHHHHCCC-CCCEEHHHHHHHHHHCCCCEE----EEEEECCCCCC
T ss_conf 457778-898999999974433-----00-6889999985367-871241359999998298779----99651476877
Q ss_pred -----HH--------HHHHHHHHHHHHCCCEE
Q ss_conf -----98--------99999999999879611
Q gi|254780445|r 169 -----SE--------AQIASELLKIAESDQIY 187 (963)
Q Consensus 169 -----y~--------~~~~~~F~~l~~kGliy 187 (963)
|| ..|...|.+-.++|..-
T Consensus 75 y~~~~FY~~~~~~D~~RV~~lF~~A~~~gI~I 106 (212)
T pfam09778 75 YSVETFYKKHFDADEVRVNELFQKAESAGIDV 106 (212)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 55301687753228999999999999749806
No 152
>TIGR02572 LcrR type III secretion system regulator LcrR; InterPro: IPR013405 This family of proteins are encoded within type III secretion operons and have been characterised in Yersinia as a regulator of the Low-Calcium Response (LCR) ..
Probab=39.78 E-value=12 Score=15.72 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEE
Q ss_conf 5452356647982100000012211321013203
Q gi|254780445|r 408 EVVIAALINACAILNRSIVKHSYPHSWRSKKPII 441 (963)
Q Consensus 408 ~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii 441 (963)
...|..+++.|..+. ||||+ ++||-
T Consensus 3 dpL~pwf~~~G~~v~--------Ph~l~-~s~I~ 27 (142)
T TIGR02572 3 DPLIPWFEETGLEVT--------PHCLQ-KSPIQ 27 (142)
T ss_pred CCCCCHHHHCCCEEE--------CEECC-CCCCC
T ss_conf 765504560885250--------34526-88620
No 153
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=39.70 E-value=21 Score=14.05 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=8.4
Q ss_pred CCCCCCCCHHHH
Q ss_conf 255889762157
Q gi|254780445|r 63 PYANGHIHIGHA 74 (963)
Q Consensus 63 Py~nG~lH~GH~ 74 (963)
|.+ |.||-||.
T Consensus 26 PTM-G~LH~GHl 36 (512)
T PRK13477 26 PTM-GALHQGHL 36 (512)
T ss_pred CCC-CHHHHHHH
T ss_conf 897-23758999
No 154
>KOG2369 consensus
Probab=38.92 E-value=20 Score=14.13 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCCCHHHHCCCCCCCCCCC-CCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHH--HCCCCCCCCCC
Q ss_conf 545235664798210000001221132101-320333310236630224554236899998752--00000244434
Q gi|254780445|r 408 EVVIAALINACAILNRSIVKHSYPHSWRSK-KPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEV--EKIRFFPSSGK 481 (963)
Q Consensus 408 ~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~-~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i--~~v~~~P~~~k 481 (963)
..+|+.|...| ....+-.+.+|||||-. ++. .-.+|.|.++. ..-|.+.+.. ++|..++-+.-
T Consensus 127 ~~~i~~lv~~G--Ye~~~~l~ga~YDwRls~~~~--e~rd~yl~kLK-------~~iE~~~~~~G~kkVvlisHSMG 192 (473)
T KOG2369 127 HELIENLVGIG--YERGKTLFGAPYDWRLSYHNS--EERDQYLSKLK-------KKIETMYKLNGGKKVVLISHSMG 192 (473)
T ss_pred HHHHHHHHHHC--CCCCCEEECCCCCHHHCCCCH--HHHHHHHHHHH-------HHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99999987617--216862550553330056875--57779999999-------99999998728974699953774
No 155
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=36.74 E-value=9.4 Score=16.41 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=4.7
Q ss_pred CCCCCCCCCC
Q ss_conf 5285217546
Q gi|254780445|r 923 KKCARSWRVT 932 (963)
Q Consensus 923 ~KC~RCW~~~ 932 (963)
-||++|-.|+
T Consensus 6 rkC~~cg~YT 15 (59)
T COG2260 6 RKCPKCGRYT 15 (59)
T ss_pred HCCCCCCCEE
T ss_conf 3176788146
No 156
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=36.51 E-value=10 Score=16.14 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=18.2
Q ss_pred CCCCCCCCCCC-------CHHHHHHCCCCCCCCCCC
Q ss_conf 00002444343-------202443043200001123
Q gi|254780445|r 472 KIRFFPSSGKN-------RLRSMIENRPDWLLSRQR 500 (963)
Q Consensus 472 ~v~~~P~~~k~-------r~~~~i~~~~DW~ISRqR 500 (963)
.|+|+||.... -|..+++..+.|.-+|||
T Consensus 218 GVQWHPE~~~~~~~~~~~LF~aFv~a~r~~~~~r~~ 253 (254)
T PRK11366 218 GVQWHPEWNSSEYALSRILFEGFITACQHHIAEKQR 253 (254)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 997088778767867899999999999999997415
No 157
>KOG3132 consensus
Probab=36.30 E-value=23 Score=13.70 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=5.1
Q ss_pred CHHHHHHHHHH
Q ss_conf 11124554443
Q gi|254780445|r 598 RGWFQHSLLES 608 (963)
Q Consensus 598 RgWF~s~ll~~ 608 (963)
.+|.+|-|--.
T Consensus 204 ffwl~SKL~E~ 214 (325)
T KOG3132 204 FFWLQSKLAET 214 (325)
T ss_pred HHHHHHHCCCC
T ss_conf 99986014335
No 158
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=36.25 E-value=23 Score=13.69 Aligned_cols=51 Identities=24% Similarity=0.439 Sum_probs=31.1
Q ss_pred CCCEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCC------CCCCCHH
Q ss_conf 884899628225588--97621577856687899876708982678-8882------4442089
Q gi|254780445|r 53 RKNFTLHDGPPYANG--HIHIGHALNKILKDVIVRSFQMRNFNACF-VPGW------DCHGLPI 107 (963)
Q Consensus 53 ~~~f~l~dgPPy~nG--~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~-~~Gw------D~hGLPi 107 (963)
.+.-++| |||.= .|--=+.=-.+++++..+.+ -.|+.|.. |+|| .|.|-|.
T Consensus 72 ~~~ivlY---PyAHLSs~La~P~~A~~vL~~le~~L~-~~~~eV~rAPFGwyK~F~i~ckGHPL 131 (613)
T PRK03991 72 AENIVLY---PYAHLSSDLASPKVAVEVLKKLEEELK-SEGYEVYRAPFGWYKAFKISCKGHPL 131 (613)
T ss_pred CCEEEEE---CCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCEEEEEEECCCCC
T ss_conf 8779994---510025876896899999999999986-47954997176420225777357440
No 159
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=35.93 E-value=3.8 Score=19.16 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=27.0
Q ss_pred CEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 000013037826213453000012344333664113675788788
Q gi|254780445|r 615 TPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYW 659 (963)
Q Consensus 615 ~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~ 659 (963)
.||..-+.|||..-.=.-+|+....-+-.. .+.=.||.|-+||-
T Consensus 52 ~pfg~tIAHGfltLSl~~~~~~~~~~~~~~-~~~vNYG~dkvRF~ 95 (149)
T cd03450 52 EPFGGTIAHGFLTLSLLPALTPQLFRVEGV-KMGVNYGLDKVRFP 95 (149)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCEEEC
T ss_conf 988873465066999999887526676784-33330033526706
No 160
>pfam01927 DUF82 Protein of unknown function DUF82. This prokaryotic protein family has no known function. The protein contains four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=35.83 E-value=23 Score=13.65 Aligned_cols=19 Identities=5% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHHHHHCCCCCCCCCCCCC
Q ss_conf 9987670898267888824
Q gi|254780445|r 83 IVRSFQMRNFNACFVPGWD 101 (963)
Q Consensus 83 ~~Ry~rm~G~~Vl~~~GwD 101 (963)
+|||-||-||++.|..+.+
T Consensus 12 LAr~LR~lG~Dt~~~~~~~ 30 (146)
T pfam01927 12 LARWLRLLGYDTLYDNDFE 30 (146)
T ss_pred HHHHHHHCCCCEEECCCCC
T ss_conf 9999998698870159998
No 161
>PRK13795 hypothetical protein; Provisional
Probab=35.82 E-value=18 Score=14.38 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.8
Q ss_pred CCEECCCCEEEECCCCCCCCCC
Q ss_conf 9611034302205743573650
Q gi|254780445|r 184 DQIYRGIKPIMWSIAEQTTLAE 205 (963)
Q Consensus 184 Gliyr~~~pV~w~p~~~T~La~ 205 (963)
+-+|.|+-.++||+.|+.+|=.
T Consensus 3 ~p~~lgk~~l~WC~~CNvPll~ 24 (630)
T PRK13795 3 RPVYLGKMYIYWCEKCNLPLLG 24 (630)
T ss_pred CCEEEEEEEEEECCCCCCEECC
T ss_conf 8526501699985888973215
No 162
>pfam10520 Kua-UEV1_localn Kua-ubiquitin conjugating enzyme hybrid localisation domain. This domain is part of the transcript of the fusion of two genes, the UEV1, an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localize to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes.
Probab=35.66 E-value=11 Score=15.83 Aligned_cols=14 Identities=50% Similarity=0.902 Sum_probs=11.0
Q ss_pred CCCCCCCCCEEEEE
Q ss_conf 23322445405640
Q gi|254780445|r 334 YVANDCGTGFVHVA 347 (963)
Q Consensus 334 ~V~~~~GTG~Vh~a 347 (963)
|+++|+|||+||-+
T Consensus 1 y~lADf~SGvvHW~ 14 (178)
T pfam10520 1 YLLADFGSGLVHWA 14 (178)
T ss_pred CCHHHHHCCCEEEE
T ss_conf 90168532410233
No 163
>pfam06940 DUF1287 Domain of unknown function (DUF1287). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. This family is related to pfam00877.
Probab=34.72 E-value=24 Score=13.53 Aligned_cols=29 Identities=17% Similarity=0.606 Sum_probs=18.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 25588976215778566878998767089826
Q gi|254780445|r 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNA 94 (963)
Q Consensus 63 Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~V 94 (963)
+||||+.-.+.. +..|++.|-.|..|++.
T Consensus 23 ~YP~GDvp~~~G---VCTDVViRA~R~~g~DL 51 (164)
T pfam06940 23 GYPGGDVPLNTG---VCTDVVIRAYRDQGYDL 51 (164)
T ss_pred CCCCCCCCCCCC---CCHHHHHHHHHHCCCCH
T ss_conf 899998887767---42889999999849768
No 164
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.65 E-value=22 Score=13.85 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHCCEEEECCCCEECCCH--HHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEEE---E
Q ss_conf 999999999999970607763698115776--79899999999999879611034302205743573650021013---2
Q gi|254780445|r 138 ASAWVKIQSKEFQRLGIVGDFENPYTTMTR--ESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYH---D 212 (963)
Q Consensus 138 a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp--~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey~---d 212 (963)
+-...+...+-.+++|+=+==|-.| |+-- .-...-...|.+..++|+- ..|++=+-.++....=-|+||. |
T Consensus 148 ~~~s~~ea~~~a~~igyPvivRps~-~LGG~g~~i~~n~~eL~~~~~~~~~---~S~~~qvLie~sl~gwkEie~ev~rD 223 (1063)
T PRK05294 148 IAHTMEEALEVAEEIGYPVIIRPSF-TLGGTGGGIAYNREELEEIVERGLD---LSPTTEVLIEESLLGWKEYEMEVMRD 223 (1063)
T ss_pred HCCCHHHHHHHHHHCCCCEEEEECC-CCCCCCCEEECCHHHHHHHHHHHHH---HCCCCCEEEEHHCCCCEEEEEEEEEE
T ss_conf 3099999999998659988998442-1678764043499999999999996---19998689661117988999999981
Q ss_pred EECCEEEEE
Q ss_conf 105779998
Q gi|254780445|r 213 VDSDSILVG 221 (963)
Q Consensus 213 ~~~~s~~v~ 221 (963)
..+..+.|.
T Consensus 224 ~~~n~i~v~ 232 (1063)
T PRK05294 224 KADNCIIVC 232 (1063)
T ss_pred CCCCEEEEE
T ss_conf 899989995
No 165
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=34.53 E-value=15 Score=14.97 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.4
Q ss_pred CEECCCCEEEECCCCCC
Q ss_conf 61103430220574357
Q gi|254780445|r 185 QIYRGIKPIMWSIAEQT 201 (963)
Q Consensus 185 liyr~~~pV~w~p~~~T 201 (963)
..|++..++.|||.|+-
T Consensus 4 ~dr~~~~~~~WCPGCG~ 20 (284)
T PRK11869 4 FDRPGSIDIAWCPGCGN 20 (284)
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 43678998757899975
No 166
>KOG2760 consensus
Probab=34.30 E-value=14 Score=15.24 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=14.5
Q ss_pred HHCCHHHHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 9700044899999986388677345335889
Q gi|254780445|r 791 WIAPILPFTAEEAWLSLNPEAVSVHLELFPI 821 (963)
Q Consensus 791 lLaPi~P~~aEEiw~~l~~~~~SI~~~~wP~ 821 (963)
||+|-==--|=|+|.++.- -+-+..||.
T Consensus 326 LiSPedl~~ACe~le~l~~---pl~L~kf~S 353 (432)
T KOG2760 326 LISPEDLVNACELLEHLGV---PLRLRKFNS 353 (432)
T ss_pred CCCHHHHHHHHHHHHHCCC---CEEEEECCC
T ss_conf 7897999999998873688---528997378
No 167
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=33.75 E-value=17 Score=14.55 Aligned_cols=13 Identities=0% Similarity=-0.394 Sum_probs=5.0
Q ss_pred CCCCCCCCCCHHH
Q ss_conf 5743573650021
Q gi|254780445|r 196 SIAEQTTLAEAEI 208 (963)
Q Consensus 196 ~p~~~T~La~~Ev 208 (963)
||+|+..+-..|+
T Consensus 51 Cp~C~~~iy~kdL 63 (305)
T CHL00174 51 CENCYGLNYKKFL 63 (305)
T ss_pred CCCCCCHHHHHHH
T ss_conf 9876622459999
No 168
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=33.73 E-value=20 Score=14.20 Aligned_cols=128 Identities=26% Similarity=0.308 Sum_probs=76.7
Q ss_pred CCHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH--------HH
Q ss_conf 7621--5778566878998767089826788882444208999999987655998334899999999999--------99
Q gi|254780445|r 69 IHIG--HALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRD--------SA 138 (963)
Q Consensus 69 lH~G--H~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~--------~a 138 (963)
||+| .|||=..+ +-+-=-|+.|+|- .. |.|+|- + + ++ -+++.|++.=++ .+
T Consensus 87 ~t~GGQTALNlav~--L~~~GVL~kYgV~-vL-----GT~~ea-I-~----ka-----EDRe~F~~~M~ei~~pvp~S~~ 147 (1089)
T TIGR01369 87 PTLGGQTALNLAVE--LEESGVLEKYGVE-VL-----GTPVEA-I-K----KA-----EDRELFREAMKEIGEPVPKSEI 147 (1089)
T ss_pred CCCCCHHHHHHHHH--HHHCCCCHHHCCE-EE-----CCCHHH-H-H----HH-----CCHHHHHHHHHHCCCCCCCCCC
T ss_conf 25760357777886--6206851452917-85-----234243-5-2----02-----0279999999973899881100
Q ss_pred HHHHHHHHHHHHHCCE--EEECCCCEECCCH--HHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCHHHEE---E
Q ss_conf 9999999999997060--7763698115776--7989999999999987961103430220574357365002101---3
Q gi|254780445|r 139 SAWVKIQSKEFQRLGI--VGDFENPYTTMTR--ESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEY---H 211 (963)
Q Consensus 139 ~~~i~~~~~~~~rlG~--~~Dw~~~y~T~dp--~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~~Evey---~ 211 (963)
-+..++-.+--+++|+ .+ |+-+|+== .=.++...-|.++.++|| ...|++-|=-.++.+.==|+|| +
T Consensus 148 ~~~~eEA~~~a~~~GyPviV---RpAftLGG~GgGiA~n~eEL~~~~~~aL---~~SpI~qvL~EkSl~GWKE~EYEVmR 221 (1089)
T TIGR01369 148 VHSVEEALKAAKEIGYPVIV---RPAFTLGGTGGGIASNEEELKEIVERAL---SASPINQVLVEKSLAGWKEIEYEVMR 221 (1089)
T ss_pred CCCHHHHHHHHHHCCCCEEE---CCCHHCCCCCCCEECCHHHHHHHHHHHH---HHCCCCEEEEEEECCCCEEEEEEEEE
T ss_conf 27889999999626896898---1003238899852257789999999886---30888557501100331788988986
Q ss_pred EEECCEEEEE
Q ss_conf 2105779998
Q gi|254780445|r 212 DVDSDSILVG 221 (963)
Q Consensus 212 d~~~~s~~v~ 221 (963)
|..++.|.|.
T Consensus 222 D~~dNCItVC 231 (1089)
T TIGR01369 222 DSKDNCITVC 231 (1089)
T ss_pred ECCCCEEEEE
T ss_conf 2687889997
No 169
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-Dihydroxy-2-butanone 4-phosphate is biosynthesized from ribulose 5-phosphate and serves as the biosynthetic precursor for the xylene ring of riboflavin . It is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 34-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process.
Probab=33.31 E-value=18 Score=14.39 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=26.0
Q ss_pred ECCCCCCCCCCC-------CCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCEEEEECC
Q ss_conf 114432233224-------454056405789889899876052122100220343023
Q gi|254780445|r 328 PLIDAEYVANDC-------GTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPV 378 (963)
Q Consensus 328 pi~~~d~V~~~~-------GTG~Vh~aPahg~~Dy~~~~~~~~~~~~~~~~l~~~~~v 378 (963)
-|++|.+|+++. |.|+| |+|=|.. .++|.+||+...+
T Consensus 32 li~aAe~~tpE~i~~m~~~a~GLi-C~~~t~~-------------~~~kLdLP~Mv~~ 75 (230)
T TIGR00506 32 LIVAAEFITPEQIAFMRRHAGGLI-CVALTED-------------IADKLDLPLMVDV 75 (230)
T ss_pred HHHCCCCCCHHHHHHHHHHCCCEE-EECCCHH-------------HHHHCCCCCCCHH
T ss_conf 410122158889787666458657-3337778-------------8974689735001
No 170
>pfam07082 DUF1350 Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=33.28 E-value=23 Score=13.66 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=7.6
Q ss_pred CCCCC---CCCCCCCCCCCHH
Q ss_conf 89826---7888824442089
Q gi|254780445|r 90 RNFNA---CFVPGWDCHGLPI 107 (963)
Q Consensus 90 ~G~~V---l~~~GwD~hGLPi 107 (963)
+||-| .|.+||||..+..
T Consensus 46 ~g~~ViAtpy~~~fDH~~iA~ 66 (250)
T pfam07082 46 AGYVVIATPFVNTFDHGAIAL 66 (250)
T ss_pred CCCEEEEECCCCCCCHHHHHH
T ss_conf 896899923678987799999
No 171
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=33.20 E-value=12 Score=15.62 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=16.6
Q ss_pred EECCCCCCHHCCCCCCC----------CHHHHHCCCCHHHHH
Q ss_conf 62134530000123443----------336641136757887
Q gi|254780445|r 626 SVDENGEKMSKSKGNVV----------FPEEIISESGADVLR 657 (963)
Q Consensus 626 vld~~G~KMSKS~GNvi----------~p~~ii~~yGaD~lR 657 (963)
++-+-|+|-|-|.-+.= .|..++-.|+-|.-+
T Consensus 548 llvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~ 589 (830)
T COG1202 548 LLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEE 589 (830)
T ss_pred EEECCCHHHCCCCCCCHHHHHHHHHCCCCCCCEECCCCHHHH
T ss_conf 995577011112135189999999607987623104807889
No 172
>TIGR02642 phage_xxxx uncharacterized phage protein; InterPro: IPR013464 This uncharacterised protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus (strain YJ016), Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to the phage lambda antitermination protein Q..
Probab=32.98 E-value=18 Score=14.44 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 85285217546744788563530378899
Q gi|254780445|r 922 GKKCARSWRVTKDVGLDASYPDVSARDAA 950 (963)
Q Consensus 922 ~~KC~RCW~~~~~v~~~~~~~~lC~RC~~ 950 (963)
..+||||.==.... --+|+.|+.|..
T Consensus 182 ~~~CP~C~Gtg~~~---~~~P~~C~~C~G 207 (270)
T TIGR02642 182 SRKCPRCRGTGLRL---RRQPEECDKCAG 207 (270)
T ss_pred CCCCCCCCCCCCCC---CCCCCCCCCCCC
T ss_conf 48879865667888---977887777786
No 173
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. .
Probab=32.74 E-value=12 Score=15.67 Aligned_cols=50 Identities=32% Similarity=0.729 Sum_probs=29.0
Q ss_pred CCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH---CCC-CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEE
Q ss_conf 21013203333102366302245542368999987520---000-0244434320244304320000112345672258
Q gi|254780445|r 434 WRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE---KIR-FFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICF 508 (963)
Q Consensus 434 wR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~---~v~-~~P~~~k~r~~~~i~~~~DW~ISRqR~WG~PIPi 508 (963)
||.+..| ..|-++ +-.+|++.-- +++ .+-++|.+| ||+...--.|+|+||
T Consensus 250 w~~GSVI-----rSwL~d----------Lt~~Af~~~~dL~~~~G~v~dSGEGr----------Wtv~~a~dlg~p~PV 303 (341)
T TIGR00872 250 WRRGSVI-----RSWLLD----------LTAKAFEESADLEEVEGIVEDSGEGR----------WTVKEAVDLGVPIPV 303 (341)
T ss_pred HCCCCEE-----EHHHHH----------HHHHHHHCCCCCCCEEEEECCCCCCH----------HHHHHHHHCCCCHHH
T ss_conf 7089864-----126888----------99999750788213223670278727----------899998862788248
No 174
>pfam12574 120_Rick_ant 120kDa Rickettsia surface antigen. This domain family is found in bacteria, and is approximately 40 amino acids in length. This family is a Rickettsia surface antigen of 120kDa which may be used as an antigen for immune response against the bacterial species.
Probab=32.62 E-value=16 Score=14.83 Aligned_cols=13 Identities=54% Similarity=0.649 Sum_probs=9.1
Q ss_pred ECCCCCCHHCCCC
Q ss_conf 2134530000123
Q gi|254780445|r 627 VDENGEKMSKSKG 639 (963)
Q Consensus 627 ld~~G~KMSKS~G 639 (963)
+|++|+|||+|+-
T Consensus 21 ~d~~Gk~p~~~kA 33 (39)
T pfam12574 21 QDEDGKKPSASKA 33 (39)
T ss_pred ECCCCCCCCCCCC
T ss_conf 6267899770010
No 175
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=32.07 E-value=23 Score=13.73 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=23.2
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 899981788528521754674478856353037889
Q gi|254780445|r 914 SVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDA 949 (963)
Q Consensus 914 ~v~v~~a~~~KC~RCW~~~~~v~~~~~~~~lC~RC~ 949 (963)
+..|+--+|+-|+||---...+....---..|++|.
T Consensus 237 ~l~VYgR~GepC~~CGt~I~k~~~~gR~t~~CP~CQ 272 (273)
T COG0266 237 ELKVYGRAGEPCRRCGTPIEKIKLGGRSTFYCPVCQ 272 (273)
T ss_pred EEEEECCCCCCCCCCCCEEEEEEECCCCCEECCCCC
T ss_conf 689855789988745887679998687677687878
No 176
>pfam05996 Fe_bilin_red Ferredoxin-dependent bilin reductase. This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase EC:1.3.7.5 (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase EC:1.3.7.2 (PebA) and phycoerythrobilin:ferredoxin oxidoreductase EC:1.3.7.3 (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesized from heme via the intermediary of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities.
Probab=31.05 E-value=27 Score=13.18 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=26.2
Q ss_pred CCEEEECCCCCCCCEEEECCCCCCCCCCCC--CC-EEEEECCCCHHHH
Q ss_conf 857543137866512551144322332244--54-0564057898898
Q gi|254780445|r 311 KTMCSHPLKKLGYTFSVPLIDAEYVANDCG--TG-FVHVAPSHGVEDF 355 (963)
Q Consensus 311 g~~~~~Pl~~~~~~~~~pi~~~d~V~~~~G--TG-~Vh~aPahg~~Dy 355 (963)
|+.+-|-+.-...++.+||+.+|.|....| |. ||=..|-++..||
T Consensus 60 ~lqVlh~V~fP~~~ydlPiFG~DlV~~~~~~i~aaI~DlsP~~~~~~~ 107 (228)
T pfam05996 60 SLQVLNCVIFPDPEYDLPIFGADLVAFPAGHILAAILDLQPLKQDKDY 107 (228)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCC
T ss_conf 967999986368788988611122410786289999846776565310
No 177
>pfam11243 DUF3045 Protein of unknown function (DUF3045). Members in this family of proteins are annotated as gene protein 30.1. Currently no function is known.
Probab=30.74 E-value=28 Score=13.10 Aligned_cols=28 Identities=25% Similarity=0.167 Sum_probs=17.0
Q ss_pred CEECCCHHHHHHH-HHHHHHHHHCCCEEC
Q ss_conf 8115776798999-999999998796110
Q gi|254780445|r 161 PYTTMTRESEAQI-ASELLKIAESDQIYR 188 (963)
Q Consensus 161 ~y~T~dp~y~~~~-~~~F~~l~~kGliyr 188 (963)
.|+-+.|.|.+.- -.+|++..++|.||-
T Consensus 23 ~FfR~nP~fr~~KD~~IFk~CVeqGFiYv 51 (90)
T pfam11243 23 MFFRCNPEFRAQKDAEIFKECVEQGFIYI 51 (90)
T ss_pred HHHHCCHHHHHHCHHHHHHHHHHCCEEEE
T ss_conf 77514889886231899999997053886
No 178
>pfam08271 TF_Zn_Ribbon TFIIB zinc-binding. The transcription factor TFIIB contains a zinc-binding motif near the N-terminus. This domain is involved in the interaction with RNA pol II and TFIIF and plays a crucial role in selecting the transcription initiation site. The domain adopts a zinc ribbon like structure.
Probab=30.60 E-value=11 Score=16.02 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHCCC
Q ss_conf 2852175467447885635-303788999632698
Q gi|254780445|r 924 KCARSWRVTKDVGLDASYP-DVSARDAAVLHELGY 957 (963)
Q Consensus 924 KC~RCW~~~~~v~~~~~~~-~lC~RC~~vl~~~g~ 957 (963)
|||+|-.-. +..|.+.. -+|.+|-.||++.-.
T Consensus 2 ~Cp~Cg~~~--~~~D~~~Ge~vC~~CG~Vlee~~i 34 (40)
T pfam08271 2 KCPNCGSTE--IVFDYERGEYVCTECGLVLEDNII 34 (40)
T ss_pred CCCCCCCCC--EEEECCCCCEECCCCCEEEECCCC
T ss_conf 388799970--677277897870579719000235
No 179
>TIGR02682 cas_csx11 CRISPR-associated protein, Csx11 family; InterPro: IPR014055 Members of this uncommon, sporadically distributed protein family are large (>900 amino acids) and strictly associated, so far, with CRISPR-associated (Cas) gene clusters. Nearby Cas genes always include members of the RAMP superfamily and the six-gene CRISPR-associated RAMP module. Species in which it is found, so far, include three archaea (Methanosarcina mazei, Methanosarcina barkeri and Methanobacterium thermoautotrophicum) and two bacteria (Thermodesulfovibrio yellowstonii DSM 11347 and Sulfurihydrogenibium azorense)..
Probab=30.28 E-value=24 Score=13.54 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=6.5
Q ss_pred CCCEEEEECC-CC
Q ss_conf 4540564057-89
Q gi|254780445|r 340 GTGFVHVAPS-HG 351 (963)
Q Consensus 340 GTG~Vh~aPa-hg 351 (963)
-||+.-++|- .|
T Consensus 312 ~~gi~F~~Pen~~ 324 (1264)
T TIGR02682 312 ETGIYFVVPENLD 324 (1264)
T ss_pred CCCEEEECCCCCC
T ss_conf 7850687574002
No 180
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=30.17 E-value=29 Score=13.03 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=18.9
Q ss_pred EECCCCCCCCCCCCC--CC------CCCCCCCCCCCHHHHH
Q ss_conf 817885285217546--74------4788563530378899
Q gi|254780445|r 918 LKAEGKKCARSWRVT--KD------VGLDASYPDVSARDAA 950 (963)
Q Consensus 918 ~~a~~~KC~RCW~~~--~~------v~~~~~~~~lC~RC~~ 950 (963)
.+++-.+|+||-+-. .+ ...++..+++|+.|-.
T Consensus 302 ~pa~t~~~~r~~k~nfc~ncG~~~t~~~~ng~a~fcp~cgq 342 (345)
T COG4260 302 APAATWPCARCAKLNFCLNCGCGTTADFDNGKAKFCPECGQ 342 (345)
T ss_pred CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHCHHHCC
T ss_conf 87556851000565503346865446876430020765457
No 181
>TIGR01017 rpsD_bact ribosomal protein S4; InterPro: IPR005709 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . The S4 domain is a small domain consisting of 60-65 amino acid residues that probably mediates binding to RNA. This family consists of organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=30.02 E-value=14 Score=15.18 Aligned_cols=15 Identities=33% Similarity=0.268 Sum_probs=7.6
Q ss_pred CCCCCCCCEEEEECC
Q ss_conf 332244540564057
Q gi|254780445|r 335 VANDCGTGFVHVAPS 349 (963)
Q Consensus 335 V~~~~GTG~Vh~aPa 349 (963)
|+.+.=+|.|+-+|.
T Consensus 180 ~d~~~~~G~~~~~Pe 194 (217)
T TIGR01017 180 VDKDKLEGKVLRVPE 194 (217)
T ss_pred EECCCCEEEEEECCC
T ss_conf 765750799987787
No 182
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=29.01 E-value=30 Score=12.90 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEC------CCCCCHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 344310025544421112455444331178400001303782621------34530000123443336641136757887
Q gi|254780445|r 584 AWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVD------ENGEKMSKSKGNVVFPEEIISESGADVLR 657 (963)
Q Consensus 584 ~~PaD~~~eG~Dq~RgWF~s~ll~~~~~~~~~Pfk~v~~hG~vld------~~G~KMSKS~GNvi~p~~ii~~yGaD~lR 657 (963)
-.-+||.++|.|.-. ++++..+ |.+--|+++.. .-..+ |+-|++||-.. +..-=-+|++
T Consensus 597 lIV~dMlLTGFDaP~--------L~TmYvD----K~Lk~H~L~QAisRtNR~~~~~--K~~G~IVDf~g-~~e~~~~Al~ 661 (962)
T COG0610 597 LIVVDMLLTGFDAPC--------LNTLYVD----KPLKYHNLIQAISRTNRVFPGK--KKFGLIVDFRG-LKEALKKALK 661 (962)
T ss_pred EEEECCCCCCCCCCC--------CCEEEEC----CCCCCCHHHHHHHHHCCCCCCC--CCCCEEEECCC-HHHHHHHHHH
T ss_conf 999776204677542--------0126744----5544331899998864588788--88957997814-6999999999
Q ss_pred HHHHHC
Q ss_conf 888717
Q gi|254780445|r 658 YWAVNS 663 (963)
Q Consensus 658 ~~~~~~ 663 (963)
+|.-..
T Consensus 662 ~y~~~~ 667 (962)
T COG0610 662 LYSNEG 667 (962)
T ss_pred HHHHCC
T ss_conf 975135
No 183
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=28.86 E-value=30 Score=12.88 Aligned_cols=42 Identities=31% Similarity=0.548 Sum_probs=24.3
Q ss_pred CCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHH---CCCCCC--CCCCC-CHHHHHH
Q ss_conf 013203333102366302245542368999987520---000024--44343-2024430
Q gi|254780445|r 436 SKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE---KIRFFP--SSGKN-RLRSMIE 489 (963)
Q Consensus 436 ~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~---~v~~~P--~~~k~-r~~~~i~ 489 (963)
||.|| ||-|| -+..+.+-+++-+. +..++| .||++ ||-+.++
T Consensus 117 CK~PV-YR~TP-----------lGREIaDiLlAVNR~Y~KSDYIPcI~WGrnArfa~~l~ 164 (217)
T PRK05813 117 CKEPV-YRTTP-----------FGREIADLLLAVNRPYNKSDYIPTIAWGRNARFCKTLE 164 (217)
T ss_pred CCCCE-ECCCC-----------CCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHCC
T ss_conf 27862-02698-----------84257777645067678777301778422256674246
No 184
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172.
Probab=28.81 E-value=23 Score=13.67 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 36899998752000002444343202443043200
Q gi|254780445|r 460 STLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDW 494 (963)
Q Consensus 460 ~~~k~~~l~~i~~v~~~P~~~k~r~~~~i~~~~DW 494 (963)
..-||.+.+.+++-.|+|+..|+++.++|+..||=
T Consensus 123 ~s~ke~~~~~i~ek~fvp~~~k~~~~a~i~~vPd~ 157 (234)
T TIGR02172 123 QSYKEKIRKFIEEKDFVPDDYKEKARAFIEEVPDT 157 (234)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 45789987510332157336899999998626898
No 185
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=28.66 E-value=30 Score=12.86 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=20.7
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 87520000024443432024430432000011234
Q gi|254780445|r 467 LSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRN 501 (963)
Q Consensus 467 l~~i~~v~~~P~~~k~r~~~~i~~~~DW~ISRqR~ 501 (963)
-++-+.+.|-|+. +-++.|++..=+|-.++++.
T Consensus 308 ~ki~~~LgW~p~y--~~Le~i~~~AW~W~~~~~~g 340 (341)
T TIGR01179 308 SKIRRELGWQPKY--DDLEIIIKTAWRWESRNPNG 340 (341)
T ss_pred HHHHHHCCCCCCC--CCHHHHHHHHHHHHHHCCCC
T ss_conf 9999753853456--88899999999999865789
No 186
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=27.92 E-value=25 Score=13.42 Aligned_cols=102 Identities=12% Similarity=0.008 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57785668789987670898267888-82444208999999987655998334899999999999999999999999997
Q gi|254780445|r 73 HALNKILKDVIVRSFQMRNFNACFVP-GWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQR 151 (963)
Q Consensus 73 H~~n~~~kDi~~Ry~rm~G~~Vl~~~-GwD~hGLPiE~~vek~l~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~r 151 (963)
|-+|+.+.-.+ ...-+|..++-|+ |+ --+|.|-. + ||-. ...-++.|..+ -+.+...+.-+.
T Consensus 75 h~~n~~~p~~~--~~~~~~~~~lDPfAG~--GSIPlEAl--R-LG~~-v~AvelnPvAy---------lfLKavlEyPkk 137 (875)
T COG1743 75 HRLNPRWPQPI--ETPFEGPKLLDPFAGG--GSIPLEAL--R-LGLE-VVAVELNPVAY---------LFLKAVLEYPKK 137 (875)
T ss_pred CCCCCCCCCCC--CCCCCCCCCCCCCCCC--CCCCHHHH--H-CCCE-EEEEECCCHHH---------HHHHHHHHCCHH
T ss_conf 87663445443--3745687402665689--86635888--6-4763-68973160899---------999999721464
Q ss_pred CCEEEECCCCEECCCHHHHHHHHHHHHHHHHCC---------CEECCCCEEEECCCCCC
Q ss_conf 060776369811577679899999999999879---------61103430220574357
Q gi|254780445|r 152 LGIVGDFENPYTTMTRESEAQIASELLKIAESD---------QIYRGIKPIMWSIAEQT 201 (963)
Q Consensus 152 lG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kG---------liyr~~~pV~w~p~~~T 201 (963)
+| -..=.+-.+|--|++.+|.+.+ -+|.+.+.|- ||.|+-
T Consensus 138 fg---------~~liedv~~~~~wI~e~Lk~~~i~e~y~~dvaaYiw~w~Vk-CP~CG~ 186 (875)
T COG1743 138 FG---------PELIEDVERWGAWITEQLKNDPIGELYDEDVAAYIWTWEVK-CPRCGR 186 (875)
T ss_pred HH---------HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEEEE-CCCCCC
T ss_conf 50---------77799999999999999861651122034321367888986-587676
No 187
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=27.13 E-value=32 Score=12.68 Aligned_cols=11 Identities=36% Similarity=0.235 Sum_probs=3.7
Q ss_pred HHHHHHHHHHC
Q ss_conf 48999999863
Q gi|254780445|r 797 PFTAEEAWLSL 807 (963)
Q Consensus 797 P~~aEEiw~~l 807 (963)
|+|.-|..+++
T Consensus 115 P~TPl~~~~~~ 125 (216)
T TIGR01163 115 PATPLEALEYV 125 (216)
T ss_pred CCCCHHHHHHH
T ss_conf 99998789989
No 188
>KOG1428 consensus
Probab=27.11 E-value=27 Score=13.22 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 785668789987
Q gi|254780445|r 75 LNKILKDVIVRS 86 (963)
Q Consensus 75 ~n~~~kDi~~Ry 86 (963)
+--+.|-+++||
T Consensus 95 l~~~ak~~l~~~ 106 (3738)
T KOG1428 95 LVAIAKSILARF 106 (3738)
T ss_pred HHHHHHHHHHHH
T ss_conf 477799999985
No 189
>PRK12676 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Reviewed
Probab=26.77 E-value=33 Score=12.64 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCC--EEEEC--CCCEEC-CCHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999706--07763--698115-77679899999999999
Q gi|254780445|r 125 IPVNEFRQACRDSASAWVKIQSKEFQRLG--IVGDF--ENPYTT-MTRESEAQIASELLKIA 181 (963)
Q Consensus 125 ~~~~~~~~~c~~~a~~~i~~~~~~~~rlG--~~~Dw--~~~y~T-~dp~y~~~~~~~F~~l~ 181 (963)
|++.||.+.|++.|....+..+..|.+.. ..+.. ++...| .|-.-++.+...+.+++
T Consensus 1 m~~~e~l~~a~~~A~~ag~~i~~~f~~~~~~~~~~~k~d~~pVT~aD~~ae~~i~~~L~~~~ 62 (262)
T PRK12676 1 MSIMEWLELCDDMAKAVEDAIMPLFGTPDAGETVGMGADGTPTKKIDKVAEDIILSVLKSLG 62 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 98899999999999999999999856855672787759809357999999999999999878
No 190
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.74 E-value=22 Score=13.79 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=4.7
Q ss_pred CCCCCCEEEE
Q ss_conf 2776745899
Q gi|254780445|r 254 FSSNHQYGLY 263 (963)
Q Consensus 254 v~p~~~Y~~~ 263 (963)
..||++.-.+
T Consensus 25 ~speIDlLvv 34 (216)
T COG3110 25 LSPEIDLLVV 34 (216)
T ss_pred CCCCCCEEEE
T ss_conf 3787408996
No 191
>TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A'; InterPro: IPR012758 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0008270 zinc ion binding, 0006350 transcription.
Probab=26.61 E-value=33 Score=12.62 Aligned_cols=56 Identities=7% Similarity=-0.065 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECCCCCCCCCC
Q ss_conf 999999999999997060776369811577679899999999999879611034302205743573650
Q gi|254780445|r 137 SASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAE 205 (963)
Q Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~~pV~w~p~~~T~La~ 205 (963)
..++.++..++.+.++-- .+-+++-..++|+.|.+.+.|-- +=.-=||+|+-..++
T Consensus 104 l~e~~~~~Y~~~~~~~~~--------~~~~~a~~nfiq~~l~~~i~k~A-----~k~~~CPhCg~~q~~ 159 (901)
T TIGR02390 104 LTEEEIEQYLEKINKLKE--------EGGSLALSNFIQETLIEKIVKEA-----AKRMKCPHCGEEQKK 159 (901)
T ss_pred CCHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHH-----HHCCCCCCCCCCCCC
T ss_conf 477899999999999973--------45874678888888899999998-----617879888741243
No 192
>pfam03854 zf-P11 P-11 zinc finger.
Probab=26.31 E-value=33 Score=12.61 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 28521754674478856353037889996326
Q gi|254780445|r 924 KCARSWRVTKDVGLDASYPDVSARDAAVLHEL 955 (963)
Q Consensus 924 KC~RCW~~~~~v~~~~~~~~lC~RC~~vl~~~ 955 (963)
-|..||--...+..=.+| -||-+|-..+-.-
T Consensus 4 nCKsCWf~~k~Li~C~dH-YLCl~CLt~ml~~ 34 (50)
T pfam03854 4 NCKSCWFADKNLVTCSDH-YLCLRCLQLLLSV 34 (50)
T ss_pred CCHHHHCCCCCEEEECCH-HHHHHHHHHHHCC
T ss_conf 574031046882213420-4499999999730
No 193
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=26.24 E-value=18 Score=14.37 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=9.4
Q ss_pred CCCCCHH-HH-HHCCC----CCCCCC
Q ss_conf 4343202-44-30432----000011
Q gi|254780445|r 479 SGKNRLR-SM-IENRP----DWLLSR 498 (963)
Q Consensus 479 ~~k~r~~-~~-i~~~~----DW~ISR 498 (963)
+||+.++ +. |||.| +-+|||
T Consensus 368 sGRGELhLsILiEtMRREGfEl~Vg~ 393 (609)
T TIGR01394 368 SGRGELHLSILIETMRREGFELQVGR 393 (609)
T ss_pred ECCEEEHHHHHHHCCCCCCEEEEECC
T ss_conf 20111302345420344441475359
No 194
>TIGR02890 spore_yteA sporulation protein, yteA family; InterPro: IPR014240 This entry contains predicted regulatory proteins that are found in nearly every species of the endospore-forming bacteria within the Firmicutes (low-GC Gram-positive bacteria), with the exception of Clostridium perfringens. Some (but not all) of these proteins contain an unusual DksA/TraR C4-type zinc finger, where only one of the four key Cys residues is conserved. All members of this entry share an additional C-terminal domain. The function of proteins in this family is unknown. YteA is found in mature spores of Bacillus subtilis and its expression appeasr to be regulated by sigma-K ..
Probab=25.86 E-value=23 Score=13.69 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCEEE
Q ss_conf 22113210132033
Q gi|254780445|r 429 SYPHSWRSKKPIIF 442 (963)
Q Consensus 429 ~yP~cwR~~~pii~ 442 (963)
+|..|-+||+||-+
T Consensus 87 tYGICe~cG~~Ip~ 100 (167)
T TIGR02890 87 TYGICEVCGKPIPY 100 (167)
T ss_pred CCEEECCCCCCCCH
T ss_conf 97000448787984
No 195
>pfam01756 ACOX Acyl-CoA oxidase. This is a family of Acyl-CoA oxidases EC:1.3.3.6. Acyl-coA oxidase converts acyl-CoA into trans-2- enoyl-CoA.
Probab=25.83 E-value=34 Score=12.52 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=19.2
Q ss_pred CCCHHCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 5300001234433366411367578878
Q gi|254780445|r 631 GEKMSKSKGNVVFPEEIISESGADVLRY 658 (963)
Q Consensus 631 G~KMSKS~GNvi~p~~ii~~yGaD~lR~ 658 (963)
++||.+...++.+|.+..+..+.+.+++
T Consensus 24 a~~l~~~~~~G~~~~~AwN~~~v~l~~~ 51 (186)
T pfam01756 24 ADKLEKLQKSGLSPEEAWNNTSVELVQA 51 (186)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999866998899999999999999
No 196
>pfam12496 BNIP2 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=25.76 E-value=19 Score=14.33 Aligned_cols=11 Identities=36% Similarity=0.927 Sum_probs=9.7
Q ss_pred CCEEEEECCCC
Q ss_conf 40000130378
Q gi|254780445|r 614 STPFTSLITHG 624 (963)
Q Consensus 614 ~~Pfk~v~~hG 624 (963)
..|||+|++||
T Consensus 108 iepy~~visHG 118 (128)
T pfam12496 108 IEPYKRVISHG 118 (128)
T ss_pred CCHHHHHHCCC
T ss_conf 41545432147
No 197
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=25.43 E-value=11 Score=16.03 Aligned_cols=23 Identities=13% Similarity=-0.074 Sum_probs=12.2
Q ss_pred CCCCCCCCCCHHHEEEEEECCEE
Q ss_conf 57435736500210132105779
Q gi|254780445|r 196 SIAEQTTLAEAEIEYHDVDSDSI 218 (963)
Q Consensus 196 ~p~~~T~La~~Evey~d~~~~s~ 218 (963)
||+|+..+-..|++-.-..+|.+
T Consensus 33 Cp~C~~~i~~~dL~~n~~VCp~C 55 (288)
T PRK05654 33 CPSCGQVLYRKELEANLNVCPKC 55 (288)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 87765035099999838789299
No 198
>KOG0385 consensus
Probab=25.23 E-value=35 Score=12.45 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=7.0
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999998796
Q gi|254780445|r 173 IASELLKIAESDQ 185 (963)
Q Consensus 173 ~~~~F~~l~~kGl 185 (963)
+-| +..||++|+
T Consensus 176 lnW-Li~l~engi 187 (971)
T KOG0385 176 LNW-LISLYENGI 187 (971)
T ss_pred HHH-HHHHHHCCC
T ss_conf 799-999986576
No 199
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=25.05 E-value=35 Score=12.43 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 999999999997000448999999863886773453358
Q gi|254780445|r 781 IRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELF 819 (963)
Q Consensus 781 L~~il~~l~~lLaPi~P~~aEEiw~~l~~~~~SI~~~~w 819 (963)
...|++.++++-..++|++=.++|+.-. .+..+...-+
T Consensus 555 ~~~i~r~~~~lR~~LlPYiYt~~~~a~~-tG~P~mRplf 592 (772)
T COG1501 555 TEEIVREYIQLRYRLLPYIYTLAAEASE-TGLPMMRPLF 592 (772)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCEEHHH
T ss_conf 8999999999987052399999898740-3996103211
No 200
>PRK05755 DNA polymerase I; Provisional
Probab=24.93 E-value=35 Score=12.41 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=36.4
Q ss_pred CCCEEEECC-----------CCCCCCC-CCHHHHH--HHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCHH-HHHHHHHHH
Q ss_conf 884899628-----------2255889-7621577--856687899876708982678-88824442089-999999876
Q gi|254780445|r 53 RKNFTLHDG-----------PPYANGH-IHIGHAL--NKILKDVIVRSFQMRNFNACF-VPGWDCHGLPI-EWKVENEYL 116 (963)
Q Consensus 53 ~~~f~l~dg-----------PPy~nG~-lH~GH~~--n~~~kDi~~Ry~rm~G~~Vl~-~~GwD~hGLPi-E~~vek~l~ 116 (963)
+++.+|.|| ||-.|-+ .+.|-++ ..++-.++-.+ +.-| ...||..| |+ -+..-.++
T Consensus 4 k~~l~liDg~~~~~Ra~~a~~~l~~~~G~~tnai~Gf~~~l~~~~~~~------~p~~~~v~fD~~~-~tfR~~~y~~Y- 75 (889)
T PRK05755 4 KKTLLLVDGSSLAFRAFYALPPLTNSDGLPTGAVYGFLNMLLKLLKDE------KPTHIAVAFDAKG-KTFRHELYPEY- 75 (889)
T ss_pred CCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC------CCCEEEEEECCCC-CCCCCCCCHHH-
T ss_conf 894899958589999980789887999987252999999999999862------9988999963989-96352105564-
Q ss_pred HCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 559983348999999999999999999999999970607
Q gi|254780445|r 117 AKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIV 155 (963)
Q Consensus 117 ~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~ 155 (963)
..+|..+ |+++ ..++...++-+..||+-
T Consensus 76 --Ka~R~~~-P~~l--------~~Q~~~i~~~l~~~gi~ 103 (889)
T PRK05755 76 --KANRPPM-PEDL--------REQIPLLREALEALGIP 103 (889)
T ss_pred --CCCCCCC-CHHH--------HHHHHHHHHHHHHCCCC
T ss_conf --2799999-9899--------99999999999987998
No 201
>pfam12621 DUF3779 Phosphate metabolism protein. This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with pfam02714. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=24.86 E-value=34 Score=12.55 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=14.3
Q ss_pred CCCCEEEECCCCCCCCCCHHHE
Q ss_conf 0343022057435736500210
Q gi|254780445|r 188 RGIKPIMWSIAEQTTLAEAEIE 209 (963)
Q Consensus 188 r~~~pV~w~p~~~T~La~~Eve 209 (963)
+...|+.|.|++.-.||..||+
T Consensus 42 ~~~~P~lWIPrD~~GvS~~ei~ 63 (95)
T pfam12621 42 TAPPPLLWIPRDPMGLSRQEIE 63 (95)
T ss_pred CCCCCEEEEECCCCCCCHHHHH
T ss_conf 6899858854697775899999
No 202
>PRK08928 consensus
Probab=24.83 E-value=36 Score=12.40 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=46.6
Q ss_pred CCCCEEEECC-----------CCCCCCC-CCHHHHHH--HHHHHHHHHHHHCCCCCCCC-CCCCCCCCCHH-HHHHHHHH
Q ss_conf 8884899628-----------2255889-76215778--56687899876708982678-88824442089-99999987
Q gi|254780445|r 52 GRKNFTLHDG-----------PPYANGH-IHIGHALN--KILKDVIVRSFQMRNFNACF-VPGWDCHGLPI-EWKVENEY 115 (963)
Q Consensus 52 ~~~~f~l~dg-----------PPy~nG~-lH~GH~~n--~~~kDi~~Ry~rm~G~~Vl~-~~GwD~hGLPi-E~~vek~l 115 (963)
.++++++.|| ||-.|-+ .+.|=+++ ..+..++..+ +--| ..-||.-| |+ -+..-.++
T Consensus 3 ~k~~l~liDg~sl~fRAf~Al~~l~t~~G~pTnAi~GF~~mL~~~~~~~------~P~~~~v~fD~~~-~TFR~e~~~~Y 75 (861)
T PRK08928 3 KKNTFLLIDGYGFLFRAYYALQPLTTSKGEPIGGVYGFINMLLKLLSDF------KPDYLAVVFDSGG-KNFRHDIYPEY 75 (861)
T ss_pred CCCCEEEEECCHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHC------CCCEEEEEEECCC-CCCCHHHHHHH
T ss_conf 9994899967489999980799887999988244999999999999863------9988999997959-96224332565
Q ss_pred HHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHH-HHHHHHHHH-HCC
Q ss_conf 655998334899999999999999999999999997060776369811577679899-999999999-879
Q gi|254780445|r 116 LAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ-IASELLKIA-ESD 184 (963)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~-~~~~F~~l~-~kG 184 (963)
..+|..+ |++++ .++...++-+..||+-. .. -+.|++- +.-.+.+.+ ++|
T Consensus 76 ---Ka~R~~~-pedl~--------~Qip~i~~~~~~~gi~~------~~-~~gyEADDvIgTla~~~~~~g 127 (861)
T PRK08928 76 ---KANRPPP-PEDLI--------SQFPLLREAVSALNIPI------EE-KNGYEADDIIATLATKYASLG 127 (861)
T ss_pred ---CCCCCCC-CHHHH--------HHHHHHHHHHHHCCCCE------EE-ECCCCHHHHHHHHHHHHHHCC
T ss_conf ---3899999-88899--------99999999999879998------54-489358999999999999779
No 203
>pfam04918 DltD_M DltD central region. DltD is and integral membrane protein involved in the biosynthesis of D-alanyl-lipoteichoic acid. This is important in controlling the net ionic charge in lipoteichoic acid (LTA). This family is found in bacteria of the Bacillus/Clostridium group. DltD binds Dcp and ligates it with D-alanine. DltD does not ligate acyl carrier protein (ACP) with D-alanine. It also has thioesterase activity for mischarged D-alanyl-acyl carrier protein (ACP). DltD is thought to be responsible for discriminating between Dcp involved in the D-alanylation of LTA, and ACP involved in fatty acid biosynthesis. This family consists of the central region of DltD.
Probab=24.79 E-value=29 Score=13.02 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=4.9
Q ss_pred CEEEEEEEEEEE
Q ss_conf 203333102366
Q gi|254780445|r 439 PIIFRTTSQWFL 450 (963)
Q Consensus 439 pii~r~~~QWFi 450 (963)
.+++-.++|||.
T Consensus 26 K~vfiiSpQWF~ 37 (163)
T pfam04918 26 KAVFVISPQWFT 37 (163)
T ss_pred EEEEEECCCCCC
T ss_conf 489887875546
No 204
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=24.74 E-value=32 Score=12.72 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=30.1
Q ss_pred HHHHCCCCCEEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCC--CCCC
Q ss_conf 43311784000013037826213453000012344333664113675788788871787665--5443
Q gi|254780445|r 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDD--QRLG 672 (963)
Q Consensus 607 ~~~~~~~~~Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lR~~~~~~~~~~d--~~~~ 672 (963)
.++-+.|+ +++-.|||=+- =|--.|||.|||- +=|.||.++ +.|+
T Consensus 367 vAi~YdG~---~A~k~HGfQvH-VG~~~S~SRGhv~-----------------ikS~DP~~~P~i~FN 413 (540)
T TIGR01810 367 VAIRYDGK---KAAKEHGFQVH-VGSMLSKSRGHVK-----------------IKSKDPKEKPAILFN 413 (540)
T ss_pred EEEECCCH---HHHHCCCCEEE-ECCCCCCCCCCEE-----------------EECCCCCCCCEEEEC
T ss_conf 68722743---56660797588-7777778653047-----------------630487678707870
No 205
>pfam04111 APG6 Autophagy protein Apg6. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway.
Probab=24.41 E-value=36 Score=12.35 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=4.6
Q ss_pred CHHCCCCCCCCH
Q ss_conf 000012344333
Q gi|254780445|r 633 KMSKSKGNVVFP 644 (963)
Q Consensus 633 KMSKS~GNvi~p 644 (963)
+|++.+|+..|+
T Consensus 301 ~I~~dk~~i~d~ 312 (356)
T pfam04111 301 QMESEKGKINDV 312 (356)
T ss_pred ECCCCCCCCCCC
T ss_conf 104455665554
No 206
>PRK01343 zinc-binding protein; Provisional
Probab=24.41 E-value=36 Score=12.35 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCH-HHHHH
Q ss_conf 8528521754674478856353037-88999
Q gi|254780445|r 922 GKKCARSWRVTKDVGLDASYPDVSA-RDAAV 951 (963)
Q Consensus 922 ~~KC~RCW~~~~~v~~~~~~~~lC~-RC~~v 951 (963)
..+||-|-+-... .-. -.|+ ||+++
T Consensus 9 ~~~CPiC~k~~~~----~~r-PFCS~RC~~i 34 (56)
T PRK01343 9 TRPCPECGKPSTR----EAY-PFCSERCRDV 34 (56)
T ss_pred CCCCCCCCCCCCC----CCC-CCHHHHHHHH
T ss_conf 9989888997744----447-7343667263
No 207
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.39 E-value=19 Score=14.36 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.8
Q ss_pred CCCCCCCCCEEE
Q ss_conf 112345672258
Q gi|254780445|r 497 SRQRNWGVPICF 508 (963)
Q Consensus 497 SRqR~WG~PIPi 508 (963)
--+|-||+|+|+
T Consensus 50 ~~er~~GvPVpV 61 (197)
T COG4764 50 RTEREYGVPVPV 61 (197)
T ss_pred HHHHHHCCCCHH
T ss_conf 988872997167
No 208
>KOG0796 consensus
Probab=24.14 E-value=28 Score=13.08 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998898765401226
Q gi|254780445|r 722 TELDQVVREAYDAFNFKEV 740 (963)
Q Consensus 722 ~~~i~~v~~~~e~~~f~~a 740 (963)
+.+++++.+.-+.-+...|
T Consensus 132 ~~~l~~~E~LG~eG~Veea 150 (319)
T KOG0796 132 GKLLEKAEELGEEGNVEEA 150 (319)
T ss_pred HHHHHHHHHHHHCCCHHHH
T ss_conf 9999999997626888999
No 209
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=23.90 E-value=27 Score=13.18 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8852852175467447885635303788999
Q gi|254780445|r 921 EGKKCARSWRVTKDVGLDASYPDVSARDAAV 951 (963)
Q Consensus 921 ~~~KC~RCW~~~~~v~~~~~~~~lC~RC~~v 951 (963)
-.-.|-.|-+..+. .-++|+.|-..
T Consensus 138 w~~rC~GC~~~f~~------~~~~Cp~CG~~ 162 (177)
T COG1439 138 WRLRCHGCKRIFPE------PKDFCPICGSP 162 (177)
T ss_pred EEEEEECCCEECCC------CCCCCCCCCCC
T ss_conf 56898457525089------88807789991
No 210
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=23.88 E-value=25 Score=13.44 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=4.4
Q ss_pred CCCCCCCCCCE
Q ss_conf 21132101320
Q gi|254780445|r 430 YPHSWRSKKPI 440 (963)
Q Consensus 430 yP~cwR~~~pi 440 (963)
|.+|.+||.||
T Consensus 80 YG~Ce~cG~~I 90 (120)
T COG1734 80 YGICEECGEPI 90 (120)
T ss_pred CCCHHCCCCCC
T ss_conf 61143369968
No 211
>cd05596 STKc_ROCK STKc_ROCK: Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesio
Probab=23.84 E-value=37 Score=12.28 Aligned_cols=10 Identities=40% Similarity=0.511 Sum_probs=3.8
Q ss_pred HHHCCCCCEE
Q ss_conf 3311784000
Q gi|254780445|r 608 SCATRGSTPF 617 (963)
Q Consensus 608 ~~~~~~~~Pf 617 (963)
...+.|.+||
T Consensus 238 Yeml~G~~PF 247 (370)
T cd05596 238 YEMLVGDTPF 247 (370)
T ss_pred HHHHHCCCCC
T ss_conf 9998398998
No 212
>pfam11062 DUF2863 Protein of unknown function (DUF2863). This bacterial family of proteins have no known function.
Probab=23.72 E-value=37 Score=12.26 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=17.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 66554431025677764000001100000122444456
Q gi|254780445|r 666 HDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGN 703 (963)
Q Consensus 666 ~~d~~~~~~~l~~~~~~~~kl~Nt~rf~l~~l~~~~~~ 703 (963)
+.++++....+.....++-- -||+++.+.-..+.
T Consensus 173 g~~~~~~~~~~pET~~fLAD----~RyLlaaVavp~G~ 206 (398)
T pfam11062 173 GKDLKIETRDMPETAPFLAD----TRYLLAAVAVPAGE 206 (398)
T ss_pred CCCCCCCCCCCCHHHHHHCC----CHHEEEEEECCCCC
T ss_conf 88778772447234455324----41004677404788
No 213
>KOG0610 consensus
Probab=23.33 E-value=38 Score=12.21 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHCCCEECCCCEEE
Q ss_conf 98999999999998796110343022
Q gi|254780445|r 169 SEAQIASELLKIAESDQIYRGIKPIM 194 (963)
Q Consensus 169 y~~~~~~~F~~l~~kGliyr~~~pV~ 194 (963)
|.+.++-++.-|+--|.|||+.||=|
T Consensus 184 YaAEvl~ALEYLHmlGivYRDLKPEN 209 (459)
T KOG0610 184 YAAEVLLALEYLHMLGIVYRDLKPEN 209 (459)
T ss_pred HHHHHHHHHHHHHHHCEEECCCCCCE
T ss_conf 99999999999975162321478422
No 214
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=23.21 E-value=38 Score=12.19 Aligned_cols=19 Identities=11% Similarity=-0.024 Sum_probs=7.8
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 6655443102567776400
Q gi|254780445|r 666 HDDQRLGKNIIQTNIDTYR 684 (963)
Q Consensus 666 ~~d~~~~~~~l~~~~~~~~ 684 (963)
-.+++.|++.++...++++
T Consensus 232 IpG~Nds~~~i~a~~~f~~ 250 (305)
T TIGR02494 232 IPGFNDSEENIEAIAEFLR 250 (305)
T ss_pred CCCCCCCHHHHHHHHHHHH
T ss_conf 4898989899999999999
No 215
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=23.00 E-value=34 Score=12.52 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 20000112345672258982588473252112444212221188743356401
Q gi|254780445|r 492 PDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSR 544 (963)
Q Consensus 492 ~DW~ISRqR~WG~PIPi~~~e~~~~~~~~~~~~~i~~~~~~~g~d~~~~~~~~ 544 (963)
.|=|+-|++-=|.||| .++...+++-+++.+.+-||+.+..
T Consensus 112 lDtc~rrN~ergepip------------~Evl~qly~RfEePn~~~rWDspll 152 (261)
T COG4088 112 LDTCLRRNRERGEPIP------------EEVLRQLYDRFEEPNPDRRWDSPLL 152 (261)
T ss_pred HHHHHHHHCCCCCCCC------------HHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 8999886024799998------------9999999996149997765567637
No 216
>PRK13794 hypothetical protein; Provisional
Probab=22.97 E-value=38 Score=12.16 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.8
Q ss_pred EECCCCEEEECCCCCCCCCC
Q ss_conf 11034302205743573650
Q gi|254780445|r 186 IYRGIKPIMWSIAEQTTLAE 205 (963)
Q Consensus 186 iyr~~~pV~w~p~~~T~La~ 205 (963)
.|-|+-..+||..|+.+|=.
T Consensus 3 ~~lgk~~l~WC~~CNvPll~ 22 (473)
T PRK13794 3 TYLGKIHLKWCDNCNTPVLD 22 (473)
T ss_pred CEEEEEEEEECCCCCCCCCC
T ss_conf 45601688884778971145
No 217
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=22.88 E-value=39 Score=12.15 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=17.8
Q ss_pred EEEEECCCCCEECCCCCCHHCCCCCCCCHHHHHC
Q ss_conf 0001303782621345300001234433366411
Q gi|254780445|r 616 PFTSLITHGFSVDENGEKMSKSKGNVVFPEEIIS 649 (963)
Q Consensus 616 Pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~ 649 (963)
-|+.-+.-||||--+-.|-|+- --|+..+.|+
T Consensus 170 ~y~H~Lp~GyVLsrdk~Kd~tq--~eislEefIE 201 (299)
T COG5252 170 SYIHKLPDGYVLSRDKIKDSTQ--VEISLEEFIE 201 (299)
T ss_pred EEEECCCCCCEECCCCCCCCCC--CCCCHHHHHH
T ss_conf 3220267420003320023455--4201999999
No 218
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=22.75 E-value=20 Score=14.07 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=5.2
Q ss_pred CCCCCCCCCC
Q ss_conf 5285217546
Q gi|254780445|r 923 KKCARSWRVT 932 (963)
Q Consensus 923 ~KC~RCW~~~ 932 (963)
.||++|-.|+
T Consensus 6 rkC~~Cg~YT 15 (54)
T PRK13130 6 RKCPKCGRYT 15 (54)
T ss_pred HHCCCCCCEE
T ss_conf 5186356430
No 219
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=22.59 E-value=39 Score=12.11 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=14.3
Q ss_pred CCCCCCEEEEECCCCHHHH
Q ss_conf 2244540564057898898
Q gi|254780445|r 337 NDCGTGFVHVAPSHGVEDF 355 (963)
Q Consensus 337 ~~~GTG~Vh~aPahg~~Dy 355 (963)
.||=||+|| |++..||-
T Consensus 81 VDYeTGAV~--P~ftAeel 97 (413)
T TIGR02153 81 VDYETGAVK--PAFTAEEL 97 (413)
T ss_pred EEEEECCCC--CCCCHHHH
T ss_conf 730305600--45398999
No 220
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=22.51 E-value=23 Score=13.74 Aligned_cols=11 Identities=45% Similarity=0.600 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q ss_conf 52852175467
Q gi|254780445|r 923 KKCARSWRVTK 933 (963)
Q Consensus 923 ~KC~RCW~~~~ 933 (963)
-+|.|||+-.+
T Consensus 7 Y~C~~Cg~~~~ 17 (49)
T COG1996 7 YKCARCGREVE 17 (49)
T ss_pred EEHHHCCCEEE
T ss_conf 99345588500
No 221
>PRK11367 hypothetical protein; Provisional
Probab=21.74 E-value=20 Score=14.17 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=4.8
Q ss_pred EECCCCCEECC
Q ss_conf 13037826213
Q gi|254780445|r 619 SLITHGFSVDE 629 (963)
Q Consensus 619 ~v~~hG~vld~ 629 (963)
.+-.+|+.++.
T Consensus 203 ~~~~~~~~l~~ 213 (476)
T PRK11367 203 KVTAKSFTIDS 213 (476)
T ss_pred EEEECCEEECC
T ss_conf 45252336405
No 222
>smart00788 Adenylsucc_synt Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Furt
Probab=21.67 E-value=41 Score=11.99 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCCCCEEEECCCCCCCCEEEECCCCCC----CCCCCCCCEEE
Q ss_conf 51784100111112857543137866512551144322----33224454056
Q gi|254780445|r 297 KIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEY----VANDCGTGFVH 345 (963)
Q Consensus 297 ~~~~~~~~~g~~l~g~~~~~Pl~~~~~~~~~pi~~~d~----V~~~~GTG~Vh 345 (963)
+..++.++.|..=.|-++.+- +..+.+-++++-. +..=-|.|+|-
T Consensus 24 ~~d~VvR~~GG~NAGHTvv~~----g~k~~lhllPSGi~~~~~~~vIG~GvVi 72 (421)
T smart00788 24 KADVVVRFQGGNNAGHTVVVG----GKKYKLHLLPSGILNPNKKCVIGNGVVI 72 (421)
T ss_pred CCCEEEECCCCCCCCCEEEEC----CEEEEEEECCCEECCCCCEEEECCCEEE
T ss_conf 789999906767878689989----9899997178351379960787796898
No 223
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=21.62 E-value=15 Score=14.97 Aligned_cols=66 Identities=21% Similarity=0.352 Sum_probs=44.4
Q ss_pred CCCHHCCCCCCCCHHHHH---------------------------------CCCCHHHHH-------HHHHHCCCCCCCC
Q ss_conf 530000123443336641---------------------------------136757887-------8887178766554
Q gi|254780445|r 631 GEKMSKSKGNVVFPEEII---------------------------------SESGADVLR-------YWAVNSDYHDDQR 670 (963)
Q Consensus 631 G~KMSKS~GNvi~p~~ii---------------------------------~~yGaD~lR-------~~~~~~~~~~d~~ 670 (963)
.-||||+.+.+.+|.-|- ++=|||++. ||- +|..+.+
T Consensus 606 ta~M~~~t~~fPSpmiVYa~i~QG~lPvLganVTAlIE~e~Gh~vtLELlDNGAGAD~~KNDGiYsRYFT---~Y~~NgR 682 (874)
T TIGR00868 606 TAKMNKDTAKFPSPMIVYAKISQGFLPVLGANVTALIESENGHTVTLELLDNGAGADTVKNDGIYSRYFT---AYDGNGR 682 (874)
T ss_pred EEECCCCCCCCCCCEEEEEEEECCEEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCEEEEEE---CCCCCCC
T ss_conf 3320544367988728985883350421022378999817997899886417766566005831220120---2167883
Q ss_pred CCCH-----HHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 4310-----2567776400000110000012244
Q gi|254780445|r 671 LGKN-----IIQTNIDTYRKLRNTIRWMLGMLAH 699 (963)
Q Consensus 671 ~~~~-----~l~~~~~~~~kl~Nt~rf~l~~l~~ 699 (963)
.|-. ..+..+..+|.++|-+-|+=|.+.+
T Consensus 683 YSlKV~a~g~~Nt~Rl~lr~~~n~a~YIpGyveN 716 (874)
T TIGR00868 683 YSLKVRAEGGANTARLSLRPPKNKALYIPGYVEN 716 (874)
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCEEECCEEEC
T ss_conf 5799998356786201278855352550664783
No 224
>pfam09152 DUF1937 Domain of unknown function (DUF1937). This domain is found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been described.
Probab=21.39 E-value=41 Score=11.95 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=12.0
Q ss_pred HHCCCCCCCCCCCCCC-CCCHHHHHHH
Q ss_conf 6708982678888244-4208999999
Q gi|254780445|r 87 FQMRNFNACFVPGWDC-HGLPIEWKVE 112 (963)
Q Consensus 87 ~rm~G~~Vl~~~GwD~-hGLPiE~~ve 112 (963)
.+|.+--||..||||- .|+--|....
T Consensus 74 ~~~eelivldlpGW~~S~GikrEieff 100 (117)
T pfam09152 74 DAMEELVVLDLPGWEDSAGIKREIEFF 100 (117)
T ss_pred HHHHHHHEEECCCCCCCCCHHHHHHHH
T ss_conf 997543267467743330389999999
No 225
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=21.37 E-value=33 Score=12.60 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=4.6
Q ss_pred HHHHHHHHHCC
Q ss_conf 99998752000
Q gi|254780445|r 463 RSRALSEVEKI 473 (963)
Q Consensus 463 k~~~l~~i~~v 473 (963)
|-..|++++.|
T Consensus 67 Ra~vLaaL~~V 77 (144)
T TIGR02199 67 RAEVLAALSSV 77 (144)
T ss_pred HHHHHHCCCCE
T ss_conf 89998447850
No 226
>COG4905 Predicted membrane protein [Function unknown]
Probab=20.97 E-value=42 Score=11.91 Aligned_cols=35 Identities=6% Similarity=-0.062 Sum_probs=27.2
Q ss_pred HHHHHHHH-HHHHHHHCCCEECCCCEEEECCCCCCC
Q ss_conf 79899999-999999879611034302205743573
Q gi|254780445|r 168 ESEAQIAS-ELLKIAESDQIYRGIKPIMWSIAEQTT 202 (963)
Q Consensus 168 ~y~~~~~~-~F~~l~~kGliyr~~~pV~w~p~~~T~ 202 (963)
+|.-|+|. +|+..-+|.++|||.-.=+|||.-|-.
T Consensus 14 SfiGWvwEt~fcS~~dkk~V~RGFL~GpyCPiYGFG 49 (243)
T COG4905 14 SFIGWVWETIFCSVNDKKIVNRGFLTGPYCPIYGFG 49 (243)
T ss_pred HHHHHHHHHHHEEECCCEEEEECCCCCCCCCCCCCC
T ss_conf 999999998624304312675012256777611454
No 227
>pfam01111 CKS Cyclin-dependent kinase regulatory subunit.
Probab=20.65 E-value=23 Score=13.75 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=9.4
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 5544421112455
Q gi|254780445|r 592 EGSDQHRGWFQHS 604 (963)
Q Consensus 592 eG~Dq~RgWF~s~ 604 (963)
-|++|-+||.+.+
T Consensus 42 LGIqqS~GW~Hy~ 54 (70)
T pfam01111 42 LGIQQSPGWVHYM 54 (70)
T ss_pred HCCCCCCCCEEEE
T ss_conf 4504488948755
No 228
>TIGR02648 rep_term_tus DNA replication terminus site-binding protein; InterPro: IPR008865 This family contains several bacterial Ter proteins. The Ter protein specifically binds to DNA replication terminus sites on the host and plasmid genome and then blocks progress of the DNA replication fork .; GO: 0003677 DNA binding, 0006274 DNA replication termination, 0005737 cytoplasm.
Probab=20.64 E-value=20 Score=14.19 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 56754523566479821000000122113210132033331023663022455423689999875200000244434320
Q gi|254780445|r 405 NANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRL 484 (963)
Q Consensus 405 ~a~~~ii~~L~e~g~l~~~~~~~H~yP~cwR~~~pii~r~~~QWFi~~d~~~~~~~~~k~~~l~~i~~v~~~P~~~k~r~ 484 (963)
=|||.||+.+.....|..-++ || .++.-|=+...+ +|++..-.++++|.=.|+..+=.+
T Consensus 163 WANKhiI~n~tr~~~L~~LeK---Sl----ns~r~vapytre--------------qW~~~v~~E~~dv~~LP~~~~LKI 221 (300)
T TIGR02648 163 WANKHIIKNVTRDEILEQLEK---SL----NSGRAVAPYTRE--------------QWQELVEKEIDDVKKLPEDAVLKI 221 (300)
T ss_pred HHHHHHHHCCCHHHHHHHHHH---HH----HCCCCCCCCCHH--------------HHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 022346411577899999766---54----056789876778--------------999999999999974510053210
Q ss_pred HH
Q ss_conf 24
Q gi|254780445|r 485 RS 486 (963)
Q Consensus 485 ~~ 486 (963)
+-
T Consensus 222 KR 223 (300)
T TIGR02648 222 KR 223 (300)
T ss_pred CC
T ss_conf 16
No 229
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=20.53 E-value=40 Score=12.03 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=10.5
Q ss_pred HHHHCCCCHHHHHHH
Q ss_conf 664113675788788
Q gi|254780445|r 645 EEIISESGADVLRYW 659 (963)
Q Consensus 645 ~~ii~~yGaD~lR~~ 659 (963)
.+.|.+||++|++-|
T Consensus 131 r~~I~~~G~~Af~~W 145 (146)
T cd03008 131 VDEILRLGPACFRNW 145 (146)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 899999769999733
No 230
>KOG0199 consensus
Probab=20.45 E-value=30 Score=12.94 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=16.1
Q ss_pred HHHHHHHHCC--CCCCCCCCCCCCC-CCHH
Q ss_conf 7899876708--9826788882444-2089
Q gi|254780445|r 81 DVIVRSFQMR--NFNACFVPGWDCH-GLPI 107 (963)
Q Consensus 81 Di~~Ry~rm~--G~~Vl~~~GwD~h-GLPi 107 (963)
.-|.+|+.+- -|-|.+.-+|+-- |--|
T Consensus 110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V 139 (1039)
T KOG0199 110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHV 139 (1039)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCEE
T ss_conf 887789885676214675132027999677
No 231
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=20.39 E-value=36 Score=12.32 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=11.4
Q ss_pred ECCCCEEEECCCCCCCC
Q ss_conf 10343022057435736
Q gi|254780445|r 187 YRGIKPIMWSIAEQTTL 203 (963)
Q Consensus 187 yr~~~pV~w~p~~~T~L 203 (963)
|+....+.|||-|+--.
T Consensus 10 ~~~~~~~~wCPGCG~~~ 26 (280)
T PRK11867 10 FLRDQEPRWCPGCGDGA 26 (280)
T ss_pred HCCCCCCCCCCCCCCHH
T ss_conf 46799971689995499
No 232
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=20.35 E-value=43 Score=11.81 Aligned_cols=17 Identities=24% Similarity=0.063 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHCCCCCC
Q ss_conf 67545235664798210
Q gi|254780445|r 406 ANEVVIAALINACAILN 422 (963)
Q Consensus 406 a~~~ii~~L~e~g~l~~ 422 (963)
-.+.+-+.|+++|.-+.
T Consensus 71 ~~~E~~~~L~erGa~v~ 87 (186)
T COG1751 71 MDEEVRKELKERGAKVL 87 (186)
T ss_pred CCHHHHHHHHHCCCEEE
T ss_conf 58999999997086004
No 233
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=20.17 E-value=34 Score=12.55 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=14.0
Q ss_pred CEECCCCEEEECCCCCCCC
Q ss_conf 6110343022057435736
Q gi|254780445|r 185 QIYRGIKPIMWSIAEQTTL 203 (963)
Q Consensus 185 liyr~~~pV~w~p~~~T~L 203 (963)
++....-|-.|||-|+--.
T Consensus 8 ylr~~~~P~~wCpGCG~g~ 26 (281)
T PRK09628 8 YLRVDKMPTLWCWGCGDGV 26 (281)
T ss_pred HHCCCCCCCCCCCCCCCHH
T ss_conf 8335689988788997689
No 234
>KOG1779 consensus
Probab=20.14 E-value=11 Score=16.02 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 28521754674478856353037889996
Q gi|254780445|r 924 KCARSWRVTKDVGLDASYPDVSARDAAVL 952 (963)
Q Consensus 924 KC~RCW~~~~~v~~~~~~~~lC~RC~~vl 952 (963)
||++|.+.+- +-+.+.---+|.-|..+|
T Consensus 36 kC~gc~~iT~-vfSHaqtvVvc~~c~~il 63 (84)
T KOG1779 36 KCPGCFKITT-VFSHAQTVVVCEGCSTIL 63 (84)
T ss_pred ECCCCEEEEE-EEECCCEEEECCCCCEEE
T ss_conf 7588257889-961376279838987599
No 235
>COG2000 Predicted Fe-S protein [General function prediction only]
Probab=20.13 E-value=35 Score=12.45 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=7.8
Q ss_pred CCCCCCCCCCEEE
Q ss_conf 0112345672258
Q gi|254780445|r 496 LSRQRNWGVPICF 508 (963)
Q Consensus 496 ISRqR~WG~PIPi 508 (963)
|-|.|-||+|||-
T Consensus 115 iiRyRp~Gcpi~h 127 (226)
T COG2000 115 IIRYRPLGCPITH 127 (226)
T ss_pred EEEECCCCCCCHH
T ss_conf 7970347886220
No 236
>KOG1312 consensus
Probab=20.13 E-value=44 Score=11.77 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=6.1
Q ss_pred HHHCCCCCCC
Q ss_conf 0000122113
Q gi|254780445|r 424 SIVKHSYPHS 433 (963)
Q Consensus 424 ~~~~H~yP~c 433 (963)
..+.|.||||
T Consensus 132 s~~~~~ypYD 141 (341)
T KOG1312 132 SLFLHVYPYD 141 (341)
T ss_pred CCCEECCCCC
T ss_conf 0230016765
Done!