HHsearch alignment for GI: 254780445 and conserved domain: pfam01406
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00 E-value=2.6e-33 Score=248.82 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=95.2
Q ss_pred CCCCCCCEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCH
Q ss_conf 56888848996282-25588976215778566878998767089826788882444208999999987655998334899
Q gi|254780445|r 49 SAVGRKNFTLHDGP-PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPV 127 (963)
Q Consensus 49 ~~~~~~~f~l~dgP-Py~nG~lH~GH~~n~~~kDi~~Ry~rm~G~~Vl~~~GwD~hGLPiE~~vek~l~~~~~~~~~~~~ 127 (963)
T Consensus 5 ~~~~~v~~Yi-cgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~---------g~~p 72 (301)
T pfam01406 5 LHQGKVNMYV-CGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQ---------GESF 72 (301)
T ss_pred CCCCEEEEEE-CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH---------CCCH
T ss_conf 8799378997-899068--997522336899999999999974994699967786317999999980---------9865
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 999999999999999999999997060776369811577679899999999999879611034
Q gi|254780445|r 128 NEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGI 190 (963)
Q Consensus 128 ~~~~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~dp~y~~~~~~~F~~l~~kGliyr~~ 190 (963)
T Consensus 73 ~-------e~~d~~~~~F~~~~~~L~I~~~d~~-~rtT--ehi~~v~~~i~~L~~kG~~Y~~~ 125 (301)
T pfam01406 73 R-------ELAARFITAYTKDMDALNVLPPDLE-PRVT--EHIDEIIEFIERLIKKGYAYVSD 125 (301)
T ss_pred H-------HHHHHHHHHHHHHHHHHCCCCCCCC-CCCC--CCHHHHHHHHHHHHHCCCEEECC
T ss_conf 3-------7999999999988998498289868-7754--35799999999999779768726