RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(963 letters)
>gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 1002 bits (2591), Expect = 0.0
Identities = 391/966 (40%), Positives = 552/966 (57%), Gaps = 51/966 (5%)
Query: 8 NYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRE-SAVGRKNFTLHDGPPYAN 66
+Y TL LP+TDFPMRA LP+KE +++ +W++ +++KIRE G+ F LHDGPPYAN
Sbjct: 2 DYKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYAN 61
Query: 67 GHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIP 126
G+IHIGHALNKILKD+IVR M+ ++ +VPGWDCHGLPIE KVE + K +
Sbjct: 62 GNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFG 121
Query: 127 VNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQI 186
V EFR+ CR+ A V Q ++F+RLG+ GD+ENPY TM E + ++ E +
Sbjct: 122 VEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLL 181
Query: 187 YRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTI 246
YRG KP+ WS +T LAEAE+EY DV SI V FPVK + +VIWTTTPWT+
Sbjct: 182 YRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDE-NAYLVIWTTTPWTL 240
Query: 247 PGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVC-DVK 305
P N AIA + Y L +V G+KLI++K L +S+A + V+ V K
Sbjct: 241 PANLAIAVHPDLDYVLVEV----------NGEKLILAKALVESVAKKAGVEDYEVLETFK 290
Query: 306 AEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDIL 365
+L HP Y + P+I ++V D GTG VH AP HG ED+ +
Sbjct: 291 GSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYG--- 347
Query: 366 LNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSI 425
++V +PVD G YT EAP + G V D AN+ +I L +L
Sbjct: 348 -----LLEVLNPVDDNGRYTEEAPKYEGLFVKD-------ANKKIIEDLKEKGNLLKSEK 395
Query: 426 VKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLR 485
++HSYPH WR+K P+I+R T QWF+ +DK LR + L E+ K+ + P GKNR
Sbjct: 396 IEHSYPHCWRTKTPLIYRATPQWFVSVDK-------LRDKMLKEINKVNWVPDWGKNRFG 448
Query: 486 SMIENRPDWLLSRQRNWGVPICFFYNEK-GEILL-DKAINDRIIKTFKDQGSDAWFSEGS 543
+M+ENRPDW +SRQR WGVPI +Y ++ GEIL+ + + + + + +++G D W
Sbjct: 449 NMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDI 508
Query: 544 RDFFLGD-RASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWP---ADVYLEGSDQHRG 599
+ + + + D+LDVWFDS T +L L +P AD YLEGSDQ RG
Sbjct: 509 DELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRG 568
Query: 600 WFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYW 659
WF SLL S A G P+ +++THGF +DE G KMSKS GNVV P+++I + GAD+LR W
Sbjct: 569 WFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLW 628
Query: 660 AVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLA--DMPALEQLM 717
+SDY +D R I++ + YRK+RNT R++LG L + ++ ++ L++ +
Sbjct: 629 VASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWI 688
Query: 718 LHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSS 777
L RL L + VREAY+ ++F +VVR L NF + +LS++Y DI KD LY ++ S R ++
Sbjct: 689 LSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAA 748
Query: 778 IAVIRILCRHLIIWIAPILPFTAEEAWLSLNPE--AVSVHLELFP--IIPLEWQNACLSK 833
+ + + L+ +APILPFTAEE W +L E SVHLE +P L A L+
Sbjct: 749 QTTLYHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEVDEELIDVEAALAA 808
Query: 834 KWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEGENLAEICITSDI 893
+W +L+LR V ALE R K IGSSL +Y DS L+ + NL ++ ITS +
Sbjct: 809 RWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIYTEDSELLYKL-KPNLGKVLITSAV 867
Query: 894 TIVH---SNGPTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAA 950
+ + +A L D V + KAEG+KC R W ++G + + R
Sbjct: 868 EVAKALEALAGAEAEELVDGDGVELTVEKAEGEKCPRCWHYDTELGEELEEEGLCRRCVR 927
Query: 951 VLHELG 956
+ E+
Sbjct: 928 RIQEMR 933
>gnl|CDD|35654 KOG0433, KOG0433, KOG0433, Isoleucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 937
Score = 646 bits (1667), Expect = 0.0
Identities = 317/958 (33%), Positives = 468/958 (48%), Gaps = 82/958 (8%)
Query: 9 YSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGH 68
YS T +LP+T + + ++I Q + + S R F L D ANG+
Sbjct: 17 YSITSHLPKT--LVHFNSTGRIGQVIEVIQPPEILSS-QLSDQQRVEFELKD----ANGN 69
Query: 69 IHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVN 128
+H+GHALNKILKD+I R + +A +VPGWDCHGLPIE L + +
Sbjct: 70 LHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESEG--SRTPL 127
Query: 129 EFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYR 188
E R R A +K Q + F+R G+ D+ENPY T + EA K+ E +YR
Sbjct: 128 EIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYR 187
Query: 189 GIKPIMWSIAEQTTLAEAEIEYHDVD-SDSILVGFPV--KSSADYLIKSQI-----VIWT 240
KP+ WS + +T LAE+E+EY+D S S F + SS+ + S+I ++WT
Sbjct: 188 SFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWT 247
Query: 241 TTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIAL 300
TTPWT+P N AI+ +S QY L T +++ L + ++ K +
Sbjct: 248 TTPWTLPSNNAISVNSAIQYSLVQF------DNNPTSTFYLVASKLLEEFEKSSDRKCKI 301
Query: 301 VCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNE 360
V VK +L HPL +P+++ +V + GTG VH AP+HG ED+
Sbjct: 302 VGTVKGANLIGRRYKHPLHN---ELGLPILEGPHVTDTVGTGLVHTAPAHGFEDY----- 353
Query: 361 AKDILLNRSVDIKVPSPVDGRGFYTTEA-PGFSGARVLDDAGEKGNANEVVIAALINACA 419
L+ S ++V S VD RG YT EA G VL + ++V+ L +
Sbjct: 354 ----LVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEG------QKIVLRLLNHD-- 401
Query: 420 ILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSS 479
I++ S HSYP+ WR+KKP+I R + QWF+ +++ ++ RA ++ ++ P
Sbjct: 402 IVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEE-------IKKRASMALDDVKVAPGD 454
Query: 480 GKNRLRSMIENRPDWLLSRQRNWGVPICFFYN-EKGEILLDKAINDRIIKTFKDQGSDAW 538
RL+ ++ RP W +SRQR WGVPI Y+ G L + I T + +GSD W
Sbjct: 455 SDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVW 514
Query: 539 FSEGSRDFF-------LGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYL 591
+ + + D ASE + + DI+DVWFDS + + +L + + ADVYL
Sbjct: 515 WEIDVEELLPEEEVREIPDIASE-YKKGTDIMDVWFDSGSSWSAVLDNERE--HVADVYL 571
Query: 592 EGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISES 651
EG DQ RGWFQ SLL S A + P+ +I HGF++DENG KMSKS GNVV P + S
Sbjct: 572 EGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGS 631
Query: 652 ------GADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEP 705
GAD LR+W S+ + ++G I+ + K RNT R++LG L G +
Sbjct: 632 LKQPAYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQV 691
Query: 706 SL--ADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDS 763
D+ ++Q ML +L + + + E Y+ + F++VV L F LS+FYFDI KD
Sbjct: 692 KFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDR 751
Query: 764 LYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIP 823
LYCD S R S+ + L +L I+PILP AEE W L + + +
Sbjct: 752 LYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLH 811
Query: 824 LEWQN--ACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEG 881
LSK +L++R + S L + GS L+ P + + I E
Sbjct: 812 SGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYH---TIRIYESE- 867
Query: 882 ENLAEICITSDITIVHSNGPTDAFRLSDVP-NVSVQCLK--AEGKKCARSWRVTKDVG 936
L E+ S + I+H N ++ L + +C K A +C R W + K
Sbjct: 868 --LPELLNVSQV-ILHENRDENSVELVESRLRYCERCRKHRATFSRCVRCWDLRKQDP 922
>gnl|CDD|143905 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 565 bits (1458), Expect = e-161
Identities = 235/643 (36%), Positives = 345/643 (53%), Gaps = 51/643 (7%)
Query: 37 WQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACF 96
W + F K E+ G+ +FT+HDGPP A G +HIGHALNK LKD+++R +M+ F+ +
Sbjct: 6 WDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLW 65
Query: 97 VPGWDCHGLPIEWKVENEYLAKGKK-KDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIV 155
VPGWD HGLP E KVE + KGKK + + +FR+ CR+ + +F+RLG+
Sbjct: 66 VPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGVS 125
Query: 156 GDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDS 215
GD++ Y T+ EA + +++ + IYRG KP+ WS A T L+EAE+EY DV
Sbjct: 126 GDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEYKDVKG 185
Query: 216 DSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFD 275
SI V FP+ + +VIWTTTPWT+PGN A+A + Y V
Sbjct: 186 PSIHVAFPLADGKG----ASLVIWTTTPWTLPGNTAVAVNPEFNYVKIRV---------- 231
Query: 276 TGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYV 335
TG+ I+++ L +S+ + ++ D + ++L HP +P+I +YV
Sbjct: 232 TGEYYILAEALLKSLYKKKKEDGEILEDFRGKELIGKKYIHPF----VNREIPIIADDYV 287
Query: 336 ANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGAR 395
+ GTG VH+AP+HG +D+ +++ +PVD G Y EAP F G +
Sbjct: 288 DMEFGTGAVHIAPAHGEDDYEVGKRH---------NLEFINPVDDDGTYNEEAPEFQGLK 338
Query: 396 VLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKK 455
A + ++ L +L ++HSYPH WRS PII+R T QWF+ M
Sbjct: 339 RFK-------ARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKN- 390
Query: 456 LGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEK-G 514
L AL VEK++F P G+ R + +EN DW +SRQR WG PI +Y++ G
Sbjct: 391 ------LAEAALKAVEKVQFVPKWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTG 444
Query: 515 EILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHT 574
E+ + ++ + + +++G +AW ++D LG A Q +D+LD WF S
Sbjct: 445 EVYVRGSLKELVAGREEEEGIEAWLHRDAKDL-LGKGAGT-LEQDEDVLDTWFSSGSWPF 502
Query: 575 ILLG------KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVD 628
LG + K +PAD+ LEGSDQ RGWF ++ A GS P+ +++ HG D
Sbjct: 503 STLGYPFTNTPEFKRFFPADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRD 562
Query: 629 ENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRL 671
E G KMSKS GNV+ P ++I + GAD LR W +SDY D
Sbjct: 563 EQGRKMSKSLGNVIDPLDVIDKYGADALRLWLASSDYGRDINF 605
>gnl|CDD|30871 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 363 bits (932), Expect = e-100
Identities = 196/822 (23%), Positives = 332/822 (40%), Gaps = 112/822 (13%)
Query: 30 ESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQM 89
E + W++ F + F++ PP G +H+GHALN L+D++ R +M
Sbjct: 11 EEKWYKKWEESGYFKPDPNED--KPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRM 68
Query: 90 RNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEF 149
R +N + PG D G+ + VE + A+G + D+ EF + C + ++
Sbjct: 69 RGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQL 128
Query: 150 QRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIE 209
+RLG+ D+ TM + +++ E IYRG + + W +T +++ E+E
Sbjct: 129 RRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVE 188
Query: 210 YHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCS 269
Y +V+ + +P+ Y +V+ TT P T+ G+ A+A +
Sbjct: 189 YKEVEGKLYYIKYPLADGDGY-----LVVATTRPETLLGDTAVAVHPD------------ 231
Query: 270 GQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPL 329
D + + L PL +P+
Sbjct: 232 ---------------------------------DERYKHLVGKEVILPL----VGREIPI 254
Query: 330 IDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTEAP 389
I EYV + GTG V + P+H D+ ++ + + +D G EA
Sbjct: 255 IADEYVDPEFGTGAVKITPAHDFNDYEVGKRH---------NLPLINIIDEDGRINEEAA 305
Query: 390 G-FSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQW 448
G F+G + A + ++ L ++ KHS H R PI + QW
Sbjct: 306 GEFAGLDRFE-------ARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQW 358
Query: 449 FLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPI 506
F+ + L +AL V+ KI+F P + R +EN DW +SRQ WG I
Sbjct: 359 FVKVL-------ELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRI 411
Query: 507 CFFY-NEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDV 565
+Y E G +++ + + ++ E Q +D+LD
Sbjct: 412 PVWYCKECGNVVVAE--EEPEDPAAAEKCPK-----------------EELEQDEDVLDT 452
Query: 566 WFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSL 620
WF S+ LG D K +P D+ + G D W ++ G PF +
Sbjct: 453 WFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDV 512
Query: 621 ITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYH-DDQRLGKNIIQTN 679
HG DE G KMSKSKGNV+ P ++I + GAD LR+ + D + ++
Sbjct: 513 YIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGY 572
Query: 680 IDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKE 739
+ KL N R++L L ++ L + ++ +L RL E + V EA D + F E
Sbjct: 573 RNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDE 632
Query: 740 VVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFT 799
R L F + +Y ++ K LY + ++ A + + L+ + P +PF
Sbjct: 633 AARALYEFIWNDFCDWYLELAKPRLYGGEEE---KRAARATLYYVLDTLLRLLHPFMPFI 689
Query: 800 AEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQL 841
EE W L S+HL +P + E + K++ + ++
Sbjct: 690 TEEIWQKLPGTE-SIHLASWPEVDEELIDEEAEKEFELLKEI 730
>gnl|CDD|35655 KOG0434, KOG0434, KOG0434, Isoleucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 1070
Score = 322 bits (827), Expect = 3e-88
Identities = 251/962 (26%), Positives = 419/962 (43%), Gaps = 107/962 (11%)
Query: 21 PMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILK 80
P P++E +++ +W++I F + + GR FT +DGPP+A G H GH L +K
Sbjct: 5 PENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIK 64
Query: 81 DVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDI---PVNEFRQACRDS 137
D++ R + GWD HGLP+E++++ + G +DD+ ++++ CR
Sbjct: 65 DIVTRYATQTGHHVERRFGWDTHGLPVEYEIDKKLGITG--RDDVMKMGIDKYNNECRKI 122
Query: 138 ASAWVKIQSKEFQRLGIVGDFENPYTTMT---RESEAQIASELLKIAESDQIYRGIKPIM 194
+ K +RLG DF+N Y T+ ES + EL E +YRG K +
Sbjct: 123 VMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH---EKGLVYRGFKVMP 179
Query: 195 WSIAEQTTLA--EAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAI 252
+S A T L+ EA+ Y DV ++ V FP+ +V WTTTPWT+P N A+
Sbjct: 180 YSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDP----NVSLVAWTTTPWTLPSNLAL 235
Query: 253 AFSSNHQYG-LYDVISCSGQHTFDTGKKLIISKN-LAQSIANQTNVKIALVCDVKAEDLS 310
+ + QY + D TGKK I+ ++ L + N N ++ + L
Sbjct: 236 CVNPDFQYVKIKDK---------TTGKKYILMESRLGELYKNPKNDNYEILERFQGAALV 286
Query: 311 KTMCSHPLKKLGYTFS---VPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLN 367
TF ++ +YV D GTG VH AP+ G ED+ A I
Sbjct: 287 GLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGII--- 343
Query: 368 RSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVK 427
D P PVD G +T+E F+G V D A++++I +L + ++ S +
Sbjct: 344 -RKDSLPPCPVDESGLFTSEVTDFAGQYVKD-------ADKLIIRSLKASGRLVKASQIT 395
Query: 428 HSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKN-RLRS 486
HSYP WRS P+I+R WF+ + + + L K + P + K R +
Sbjct: 396 HSYPFCWRSDTPLIYRAVPSWFVRVK-------NIVDQLLRNNMKTHWVPQNIKEKRFAN 448
Query: 487 MIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDF 546
++N DW +SR R WG PI + ++ E + I + ++ S ++ R+
Sbjct: 449 WLKNARDWNISRNRYWGTPIPLWVSDDYE---EVVCIGSIKEL--EELSGVKITDLHRES 503
Query: 547 FLGDRASEPWIQSK-------DILDVWFDS-----ACTHTILLGKDP-KLAWPADVYLEG 593
D + P + K ++ D WF+S A H K+ + +PAD EG
Sbjct: 504 I--DHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEENFPADFIAEG 561
Query: 594 SDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGA 653
DQ RGWF L+ S A G PF ++I +G + E+G+KMSK N P II++ GA
Sbjct: 562 LDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGA 621
Query: 654 DVLRYWAVNSDYHDDQRLG----------KNIIQTNIDTYRKLRNTIRWMLGMLAHDTGN 703
D LR + +NS + L K+++ ++YR L + D
Sbjct: 622 DALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVF 681
Query: 704 EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDS 763
+ S+ +++ +L L VRE D + VV +L F + EL+++Y +
Sbjct: 682 DDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFID-ELTNWYIRFNRRR 740
Query: 764 LYCDS--PSSLKRLSSI-AVIRILCRHLIIWIAPILPFTAEEAWLSLNP---------EA 811
L ++ L+ + V+ L R + AP PF E + +L
Sbjct: 741 LKGENGEHDCHNALNVLFEVLFTLVRVM----APFTPFFTEYIYQNLKKYIPIDKNEKSE 796
Query: 812 VSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSALEI-ERKAKHIGSSLETAPTLYI 870
SVH +P E + + + ++ +++ ++ A I ER + + L+ +
Sbjct: 797 RSVHFLSYPTPKEELIDETVER---RVERMQSIIDLARNIRERNTISLKTPLKEL-IVIH 852
Query: 871 TDSSLISNIEG--ENLAEICITSDITIVHSNGPTDAFRLSDVPNVSV--QCLKAEGKKCA 926
+D + +I+ + E ++ S+ L P+ V + LK + KK
Sbjct: 853 SDEEYLEDIKSLERYILEELNVREVVFT-SDEEKYGVVLKAEPDFPVLGKKLKKDMKKVK 911
Query: 927 RS 928
++
Sbjct: 912 KA 913
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 230 bits (589), Expect = 1e-60
Identities = 90/247 (36%), Positives = 121/247 (48%), Gaps = 54/247 (21%)
Query: 435 RSKK----PIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIEN 490
R K P+I+R T QWF+ + K ++ R L +K+ + P KNR + +EN
Sbjct: 136 RGYKVVPWPLIYRATPQWFIRVTK-------IKDRLLEANDKVNWIPEWVKNRFGNWLEN 188
Query: 491 RPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGD 550
R DW +SRQR WG PI +Y E +L +
Sbjct: 189 RRDWCISRQRYWGTPIPVWYCEDCGEVLVR------------------------------ 218
Query: 551 RASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHSL 605
+ D+LDVWFDS L +D + +PAD LEGSDQ RGWF L
Sbjct: 219 -------RVPDVLDVWFDSGSMPYAQLHYPFENEDFEELFPADFILEGSDQTRGWFYSLL 271
Query: 606 LESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSD- 664
L S A G P+ ++I HGF +DE+G KMSKS GN V P+E++ + GAD LR W +SD
Sbjct: 272 LLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDV 331
Query: 665 YHDDQRL 671
Y +D R
Sbjct: 332 YAEDLRF 338
Score = 204 bits (520), Expect = 2e-52
Identities = 68/141 (48%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 56 FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEY 115
F HDGPPYANG H GHALNKILKD+I R M+ + PGWDCHGLPIE KVE E
Sbjct: 3 FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL 62
Query: 116 LAKGKK-KDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIA 174
GKK + + + EF CR+ A +V Q ++FQRLG+ D+ENPY TM E +
Sbjct: 63 GISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVW 122
Query: 175 SELLKIAESDQIYRGIKPIMW 195
++ E +YRG K + W
Sbjct: 123 WVFKQLHEKGLLYRGYKVVPW 143
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 216 bits (552), Expect = 3e-56
Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 6/181 (3%)
Query: 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHD---TGNEPSLADMPALEQLMLHRLTELDQV 727
+ I++ + YRK+RNT R++LG L +D + ++ L++ LHRL EL +
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNL-NDFDPAKDAVPYEELLELDRYALHRLNELIKE 59
Query: 728 VREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRH 787
VREAY+ + F +V + L NF +LS+FY DI KD LYCD+ SL+R S+ V+ +
Sbjct: 60 VREAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDA 119
Query: 788 LIIWIAPILPFTAEEAWLSLNPE--AVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVV 845
L+ +APILPFTAEE W L E SV LE +P +P EW++ L +KW K+L LR V
Sbjct: 120 LLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEWKDEELEEKWEKLLALRDEV 179
Query: 846 T 846
Sbjct: 180 N 180
>gnl|CDD|35653 KOG0432, KOG0432, KOG0432, Valyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 995
Score = 216 bits (551), Expect = 3e-56
Identities = 212/951 (22%), Positives = 332/951 (34%), Gaps = 177/951 (18%)
Query: 30 ESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQM 89
ES +W+K F K F + PP G +HIGHAL ++D + R +M
Sbjct: 52 ESAWYKWWEKQGFF-KPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRM 110
Query: 90 RNFNACFVPGWDCHGLPIEWKVENEYLAK--GKKKDDIPVNEFRQACRDSASAWVKIQSK 147
+ +VPG D G+ + VE + LA+ GK + D+ EF + + +
Sbjct: 111 HGYQVLWVPGTDHAGIATQVVVE-KQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYN 169
Query: 148 EFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAE 207
+ +RLG D++ TM + + +++ E IYR + + W A ++ +++ E
Sbjct: 170 QLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIE 229
Query: 208 IEYHDVDSDSIL--------VGFPVKSSADYLI---KSQIVIWTTTPWTIPGNRAIAFSS 256
+E ++ ++L V F V S Y + +IV+ TT P TI G+ A+A
Sbjct: 230 VESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAV-- 287
Query: 257 NHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSH 316
H D K + K H
Sbjct: 288 ---------------HPDDDRYKHLHGKF----------------------------VKH 304
Query: 317 PLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPS 376
P +P+I V + GTG V + P+H D+ + L ++
Sbjct: 305 PFTGR----KLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGK--RHNLEFINI------ 352
Query: 377 PVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAAL--INACAILNRSIVKHSY--PH 432
G F G + + A E V+ L + L H P
Sbjct: 353 -FTDDGLLNNVCGEFKGMKRFE-------AREKVVEKLKELG----LYVGKENHPMVLPI 400
Query: 433 SWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVE--KIRFFPSSGKNRLRSMIEN 490
RS I QWF+ + + +AL VE K+ P + +EN
Sbjct: 401 CSRSGDVIEPLLKPQWFVSCKE-------MAKKALKAVESGKLEILPEFHEKEWYRWLEN 453
Query: 491 RPDWLLSRQRNWG--VPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFL 548
DW +SRQ WG +P F G D + R S+ E + + F
Sbjct: 454 IRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVAR---------SEEEAREKAAEKF- 503
Query: 549 GDRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQH 603
G Q D+LD WF S LG KD K +P + G D W
Sbjct: 504 GPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVAR 563
Query: 604 SLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEI---------------- 647
++ G PF ++ HG D +G KMSKS GNV+ P ++
Sbjct: 564 MVMLGLKLTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSG 623
Query: 648 ---------------------ISESGADVLRYWAVNSDYH-DDQRLGKNIIQTNIDTYRK 685
I E G D LR+ + D L ++ K
Sbjct: 624 NLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNK 683
Query: 686 LRNTIRWMLGMLAHDTGNEPSLADMPALEQL-----MLHRLTELDQVVREAYDAFNFKEV 740
L N R+ L L PS + + + +L RL E + V E+ +A NF
Sbjct: 684 LWNATRFALQRLG--ENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLA 741
Query: 741 VRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLII---WIAPILP 797
L F +L Y + K L+ DS + + R+L R L + P +P
Sbjct: 742 TSALYAFWLYDLCDVYLEATKPLLWGDSEA-----LAYEARRVLYRCLDNGLRLLHPFMP 796
Query: 798 FTAEEAWLSL----NPEAVSVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSA---LE 850
F EE W L + S+ + +P W+N L + +L + + + S
Sbjct: 797 FITEELWQRLPRRKGSKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEYN 856
Query: 851 IERKAKH---IGSSLETAPTLYITDSSLISNIEGENLAEICITSDITIVHS 898
+ K + I SS E ++ IS + L I ++
Sbjct: 857 LSPKPRGSVFIASSDEEDKSILKEFLDEISTLTNLELVSISSPAEEDAQGC 907
>gnl|CDD|30841 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 150 bits (380), Expect = 2e-36
Identities = 177/834 (21%), Positives = 283/834 (33%), Gaps = 152/834 (18%)
Query: 36 YWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNAC 95
W++ ++F+ +S K + L PY +G +H+GH N + DVI R +M+ +N
Sbjct: 17 RWEEAKVFEADEDSDKPEKFYVL-VMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVL 75
Query: 96 FVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIV 155
GWD GLP E K + K+ + LG
Sbjct: 76 HPMGWDAFGLPAE-----NAAIKIGTDPAKWTYYNIAYMK-----------KQLKSLGFS 119
Query: 156 GDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDS 215
D+ + T E I + LK+ E YR P+ W + T LA ++
Sbjct: 120 IDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWR 179
Query: 216 DSILVG--------FPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVIS 267
V F + AD L+ + T P T+ G + + Y + V+
Sbjct: 180 CGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVD 239
Query: 268 CSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSV 327
G++ I+S + + + + V L + ++P L
Sbjct: 240 ---------GEEEIVSIEVFTTRPDTLF-GVTYVVLAPEHPLVGKLVTNPQTPLV----- 284
Query: 328 PLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRSVDIKVPSPVDGRGFYTTE 387
AE+V GTG V P+H +D + +PV+G +
Sbjct: 285 ----AEFVDECKGTGVVESVPAHAEKDGVF------------LGGYAINPVNGE-----K 323
Query: 388 APGFSGARVLDDAGEKGNANEVVIAALINACAILNRSIVKHSYPHSWRSKKPIIFRTTSQ 447
P + VL + G V+ + + + + K PI +
Sbjct: 324 IPVWIANYVLMEYGT-----GAVMGV---------PAHDERDLEFATKYKLPIKKVIMPE 369
Query: 448 WFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENR-----------PDWLL 496
+ G+G + S L + K ++R + R DWL
Sbjct: 370 GTVGKKVYEGEGVLINSGGLDGL-----DYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLK 424
Query: 497 SRQRNWGVPICFFYNEKGEI-------LLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLG 549
SRQR WG PI + E + L K GS + E L
Sbjct: 425 SRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVR---GLGTGSPLPWDEEWVIESLP 481
Query: 550 DRASEP-------WIQSKDILDVWFDSACTHTILLGKDPKLAW-PADVYLEGSDQ----- 596
D + +I S +FD + ++ W P D+Y+ G +
Sbjct: 482 DSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHL 541
Query: 597 ------HRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISE 650
H+ F L+ PF LIT G + E GEKMSKSKGNVV PEE + +
Sbjct: 542 LYFRFFHKALFDEGLVPK-----DEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK 596
Query: 651 SGADVLR-YWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLAD 709
GAD +R Y + D ++ ++ +++ N ++ L L + E D
Sbjct: 597 YGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKED 656
Query: 710 MPALEQLMLHRLTELDQVVREAYDA-FNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDS 768
+ +LHR + V E ++A F + L NA +R+
Sbjct: 657 -----RWLLHRTI---KKVTEDFEARQTFNTAIAALMELLNA----LRKYLRRTEG---- 700
Query: 769 PSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPII 822
V+R + +AP P AEE W L E V +P
Sbjct: 701 --------DRKVLREALETWVRLLAPFAPHIAEELWEELGNEG-FVSNAPWPEP 745
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 143 bits (363), Expect = 2e-34
Identities = 68/239 (28%), Positives = 102/239 (42%), Gaps = 29/239 (12%)
Query: 433 SWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEK--IRFFPSSGKNRLRSMIEN 490
RS I QWF+ + L +AL V++ I+F P + R + +EN
Sbjct: 156 CSRSGDVIEPLLKPQWFVKV-------KDLAKKALEAVKEGDIKFVPERMEKRYENWLEN 208
Query: 491 RPDWLLSRQRNWGVPICFFY-NEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLG 549
DW +SRQ WG I +Y + G ++ + ++ I K +
Sbjct: 209 IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPEACVPC------------ 256
Query: 550 DRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYLEGSDQHRGWFQHS 604
E Q +D+LD WF S+ LG KD K +P + + G D W
Sbjct: 257 --GGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARM 314
Query: 605 LLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNS 663
++ G PF + HG DE+G KMSKS GNV+ P ++I GAD LR+ ++
Sbjct: 315 IMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASA 373
Score = 118 bits (298), Expect = 8e-27
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 8/151 (5%)
Query: 62 PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKK 121
PP G +H+GHALN ++D+I R +M+ +N + PG D G+ + VE + +GK
Sbjct: 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68
Query: 122 KDDIPVNEFRQACRDSASAWVKIQSKE----FQRLGIVGDFENPYTTMTRESEAQIASEL 177
+ D+ EF + C + W + + +RLG D+ Y TM +
Sbjct: 69 RHDLGREEFLEKCWE----WKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAF 124
Query: 178 LKIAESDQIYRGIKPIMWSIAEQTTLAEAEI 208
+++ E IYR + + W +T +++ E+
Sbjct: 125 VRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 136 bits (344), Expect = 3e-32
Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 56 FTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEY 115
F + PPYANG +H+GHAL I+ D I R +MR + F+PGWD HGLPIE K E
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAER-- 59
Query: 116 LAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIAS 175
G+KK I + EFR+ ++ ++F+RLGI D+ + Y T E +
Sbjct: 60 -KGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVEL 118
Query: 176 ELLKIAESDQIYRGIKPI 193
++ E IYRG P+
Sbjct: 119 IFSRLYEKGLIYRGTHPV 136
Score = 129 bits (327), Expect = 3e-30
Identities = 64/234 (27%), Positives = 94/234 (40%), Gaps = 54/234 (23%)
Query: 437 KKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLL 496
+ R T QWF M K + + L + + + P KNR+ + +E+ DW +
Sbjct: 131 RGTHPVRITEQWFFDMPK-------FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAI 183
Query: 497 SRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPW 556
SRQR WG P+ D D WF G
Sbjct: 184 SRQRYWGTPL---------------PEDVF---------DVWFDSGI------------- 206
Query: 557 IQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATRGSTP 616
+ + K ++PAD +L G D RGW + A G P
Sbjct: 207 ---------GPLGSL-GYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIP 256
Query: 617 FTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQR 670
+L+ HGF +DE G+KMSKSKGNV+ P +++ + GAD LRY+ + + D
Sbjct: 257 PKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDI 310
>gnl|CDD|30492 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 98.8 bits (246), Expect = 6e-21
Identities = 95/445 (21%), Positives = 157/445 (35%), Gaps = 81/445 (18%)
Query: 431 PHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFF--PSSGKNRLRSMI 488
P S R +F + K + + L E F P++ +N + + +
Sbjct: 173 PVCVISGATPEVREEEHYFFRLSK-------FQDKLLEWYESNPDFIWPANRRNEVLNFL 225
Query: 489 ENR-PDWLLSRQR-NWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDF 546
+ D ++R +WG+P+ + + D I I + ++ E + F
Sbjct: 226 KEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIG--YISALGE-LAEIGDDEDFKKF 282
Query: 547 FLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLL 606
+ D KDI + F H + WPA L +
Sbjct: 283 WPADDTELVHFIGKDI--IRF-----HAVY--------WPA--MLMAAGLPL-------- 317
Query: 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYW-AVNSDY 665
T + HGF E G+KMSKS+GNVV P+E++ + G D LRY+ A
Sbjct: 318 ----------PTRIFAHGFLTLE-GQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPE 366
Query: 666 HDDQRLGKNIIQT--NIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQL--MLHRL 721
D N D KL N LG + A P LE+ +L
Sbjct: 367 GSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALA 426
Query: 722 TELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFD------IRKDSLYCDSPSSLKRL 775
E + V EA + + F++ + ++ A ++ Y D + K+ D L +
Sbjct: 427 REALEAVAEAMEKYEFRKALEEIMAL--ASRANKYIDEQAPWKLAKE----DKRERLATV 480
Query: 776 --SSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSK 833
++ ++R+L I + P +P TAE+ W L E W A
Sbjct: 481 LYLALELVRVLA----ILLYPFMPETAEKIWDQLGLE--------EDARNFTWLGARQPL 528
Query: 834 KWGKILQLRKVVTSALEIERKAKHI 858
G L + + +E E + I
Sbjct: 529 LPGHKLGPPEPLFPRIEEEAIEELI 553
Score = 68.8 bits (168), Expect = 8e-12
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 20/158 (12%)
Query: 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVE 112
K + PY NG H+GH + DV R ++R + F+ G D HG IE K E
Sbjct: 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAE 63
Query: 113 NEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ 172
E I E + + + F+ L I D + T +
Sbjct: 64 KE---------GITPQEL---VDKNH----EEFKELFKALNISFDN---FIRTTSPEHKE 104
Query: 173 IASEL-LKIAESDQIYRGIKPIMWSIAEQTTLAEAEIE 209
+ E LK+ E+ IY ++ ++ + L + +E
Sbjct: 105 LVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE 142
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 71.9 bits (177), Expect = 7e-13
Identities = 59/234 (25%), Positives = 76/234 (32%), Gaps = 88/234 (37%)
Query: 447 QWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRPDWLLSRQRNWGVPI 506
QWFL K + + + L ++EK+ +P + + I SRQR WG PI
Sbjct: 131 QWFL----KYSETEW-KEKLLKDLEKLDGWPEEVRAMQENWIG------CSRQRYWGTPI 179
Query: 507 CFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFSEGSRDFFLGDRASEPWIQSKDILDVW 566
PW D ++
Sbjct: 180 ------------------------------------------------PW---TDTMESL 188
Query: 567 FDS-------ACTH------TILLGKDPKLA--W-PADVYLEGSDQ-------HRGWFQH 603
DS H L D + W P D+Y+ G + R F H
Sbjct: 189 SDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSR--FNH 246
Query: 604 SLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLR 657
L P LI G V GEKMSKSKGNVV P+E I + GAD R
Sbjct: 247 KALFDEGLVTDEPPKGLIVQGM-VLLEGEKMSKSKGNVVTPDEAIKKYGADAAR 299
Score = 56.9 bits (138), Expect = 2e-08
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIE 108
PY +G +H+GH + D+I R +M+ +N F G+D GLP E
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE 54
>gnl|CDD|35656 KOG0435, KOG0435, KOG0435, Leucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 876
Score = 71.2 bits (174), Expect = 1e-12
Identities = 87/395 (22%), Positives = 136/395 (34%), Gaps = 86/395 (21%)
Query: 493 DWLLSRQRNWGVPICFFYNEKGEI---------LLDKAINDRIIKTFKDQGSDAWFSEGS 543
DWL+SRQR WG PI + + + +ND K +D W +
Sbjct: 421 DWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDC 480
Query: 544 RDFFLGDRASEPWIQSKDILDVWFDSACTH---------TILLGKDPKLAW-PADVYLEG 593
R EP + D +D + DS+ + K P DVY+ G
Sbjct: 481 ------PRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGG 534
Query: 594 SDQ---HRGW--FQHSLLESC-ATRGSTPFTSLITHG------FSVDENG---------- 631
+ H + F L+ + PFT LIT G F E+G
Sbjct: 535 KEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQ 594
Query: 632 ---------------------EKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQR 670
EKMSKSK N V P +++ E G D R + + + D
Sbjct: 595 VNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPI 654
Query: 671 LGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTEL-DQVVR 729
N + + RW L + D + L LT+ D R
Sbjct: 655 --------NWNE-SAIPGIKRW-LQRIWALVSQILQARDDGKAKDLKK--LTDGFDAETR 702
Query: 730 EAYDAFNFKEVVRQLT-NFSNA-ELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRH 787
+ + +NF ++Q+T ++ L++ D+ + + + S R L
Sbjct: 703 KLKETYNF--FIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVHSPEFERALEA- 759
Query: 788 LIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPII 822
L+I +AP P A E W +L + V +P +
Sbjct: 760 LVIMLAPFAPHVASELWSALANDLSWVSDVKWPEV 794
Score = 60.0 bits (145), Expect = 3e-09
Identities = 64/383 (16%), Positives = 127/383 (33%), Gaps = 109/383 (28%)
Query: 31 SELITYWQK--IRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQ 88
+ + +W++ F ++S +K + L PY +G +HIGH + D++ R ++
Sbjct: 33 AMIEKHWKQYLKDGFPFSKDSDKSKKKYIL-SMFPYPSGALHIGHVRVYTISDILARFYR 91
Query: 89 MRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKDDIPVNEFRQACRDSASAW----VKI 144
M+ +N GWD GLP EN + +G ++W +
Sbjct: 92 MKGYNVIHPMGWDAFGLP----AENAAIERGV----------------HPASWTINNIAK 131
Query: 145 QSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLA 204
++ + LGI D++ +T + LK+ E Y+ + W ++T LA
Sbjct: 132 MKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLA 191
Query: 205 EAEIEYHDV-------------------------------------------------DS 215
+++
Sbjct: 192 NEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRC 251
Query: 216 DSILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFD 275
D + FP+ + ++TT P T+ G + + +H D
Sbjct: 252 DGAELMFPLLDDGSN--DEILTVYTTRPETLFGASFLVLAPSHSLLDKDS---------- 299
Query: 276 TGKKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYV 335
+L + ++ + + +A++ P+ ++P++ A+YV
Sbjct: 300 ---------SLKEFLSKSDLPQKGVQLPCQAKN--------PVTGR----AIPVVVADYV 338
Query: 336 ANDCGTGFVHVAPSHGVEDFTAW 358
+ GTG V AP H D
Sbjct: 339 LDPYGTGAVMGAPGHDQRDKELA 361
>gnl|CDD|35657 KOG0436, KOG0436, KOG0436, Methionyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 578
Score = 68.9 bits (168), Expect = 6e-12
Identities = 67/296 (22%), Positives = 118/296 (39%), Gaps = 42/296 (14%)
Query: 538 WFSEGSRDFFLGDRASE-PW-----IQSKDILDVWFDSACTHTILLGKDPK--------- 582
W G D + ++ W + VWFD+ + ++G K
Sbjct: 236 WLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALS 295
Query: 583 LAWPADVYLEGSDQ---HRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKG 639
WPA +++ G D H ++ L+ + G + HG +NG KMSKS G
Sbjct: 296 FGWPATLHVIGKDILRFHAVYWPAFLMAA----GLPLPKMIFVHGHWT-KNGMKMSKSLG 350
Query: 640 NVVFPEEIISESGADVLRYWAV-------NSDYHDDQRLGKNIIQTNIDTYRKLRNTIRW 692
NVV P E++ + G D +RY+ + + DY ++ K I N L N +
Sbjct: 351 NVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEE----KLIKIVNAHLANTLGNLLNR 406
Query: 693 MLGMLAHDTGNEPSL----ADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS 748
LG + + E +L + A + ++ + +L +V YD F+ + + +
Sbjct: 407 CLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIG 466
Query: 749 NAELSSFYFDIRKD-SLYCDSPSSLKRLSSIAVIRILCRHLI-IWIAPILPFTAEE 802
NA + R L+ DS S + L+ + I + +I I + P+ P +
Sbjct: 467 NA--GNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLR 520
Score = 38.5 bits (89), Expect = 0.010
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 26/149 (17%)
Query: 64 YANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGKKKD 123
Y N H+GH + +L D I R +++ F G D HGL I+ + D
Sbjct: 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCD 108
Query: 124 DIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ---IASELLKI 180
I S+ F++L YT R ++ + I E
Sbjct: 109 RI--------------------SQSFRQLWKDAGIA--YTKFIRTTDPKHEAIVQEFWAR 146
Query: 181 AESD-QIYRGIKPIMWSIAEQTTLAEAEI 208
+ IYRG + ++++T E+++
Sbjct: 147 VFKNGDIYRGDYEGWYCVSDETFYPESKV 175
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 64.1 bits (157), Expect = 2e-10
Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 61/226 (26%)
Query: 441 IFRTTSQWFLHMDKKLGDGSTLRSRALSEVEK--IRFFPSSGKNRLRSMIENR-PDWLLS 497
+R +F + K + R L +EK +P + +N + S ++ D ++
Sbjct: 133 EWREEEHYFFRLSK-------FQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSIT 185
Query: 498 RQR-NWGVPICFFYNEKGEILLDKAIN--DRIIKTFKDQGSDAWFSEGSRD--FFLGDRA 552
R +WG+P+ + + D I ++ G+ W+ +G + F+G
Sbjct: 186 RDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVHFIG--- 242
Query: 553 SEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGWFQHSLLESCATR 612
KDI + F H I WPA
Sbjct: 243 -------KDI--IRF-----HAIY--------WPA-------------MLLGA------- 260
Query: 613 GSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRY 658
G T ++ HG+ E G+KMSKS+GNVV P++++ GAD LRY
Sbjct: 261 GLPLPTRIVAHGYLTVE-GKKMSKSRGNVVDPDDLLERYGADALRY 305
Score = 62.5 bits (153), Expect = 6e-10
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 63 PYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENE 114
PY NG H+GH +L DV R ++R ++ FV G D HG IE K E E
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
archaeal, bacterial, and eukaryotic cytoplasmic
isoleucyl tRNA synthetases. This domain is found in
isoleucyl tRNA synthetases (IleRS), which belong to the
class Ia aminoacyl tRNA synthetases. It lies C-terminal
to the catalytic core domain, and recognizes and
specifically binds to the tRNA anticodon. This family
includes bacterial, archaeal, and eukaryotic cytoplasmic
members. IleRS catalyzes the transfer of isoleucine to
the 3'-end of its tRNA.
Length = 183
Score = 58.7 bits (143), Expect = 8e-09
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 701 TGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIR 760
++ ++A + L++ +L RL L + V E +A++ VR L F + EL+++Y IR
Sbjct: 36 GKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFID-ELTNWY--IR 92
Query: 761 -------KDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLNPEAV- 812
+ D ++ L V+ L R L +AP PF EE + +L E
Sbjct: 93 RNRKRFWGEEGDDDKLAAYATLYE--VLLTLSR-L---MAPFTPFITEEIYQNLRRELGD 146
Query: 813 ---SVHLELFPIIPLEWQNACLSKKWGKILQLRKVVTSAL 849
SVHL +P + + L + + +R++V
Sbjct: 147 APESVHLLDWPEVDESLIDEELEE---AMELVREIVELGR 183
>gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 56.0 bits (135), Expect = 5e-08
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 608 SCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHD 667
S A G PF H ++ +GEKMSKS GN + +++ + +VLR + ++S Y
Sbjct: 243 SEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRS 302
Query: 668 DQRLGKNIIQTNIDTYRKLRNTIR 691
+ +++ +L N +R
Sbjct: 303 PLDFSEELLEEAKKALERLYNALR 326
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 53.7 bits (129), Expect = 3e-07
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 7/123 (5%)
Query: 674 NIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYD 733
++ +L + + L + + ++ +L RL E + A +
Sbjct: 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNEL-LEEADRELLARLQEFIKRTTNALE 60
Query: 734 AFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIA 793
A + V++L F+N ++Y D K +L + R + +AV+R L +A
Sbjct: 61 ALDPTTAVQELFKFTNEL--NWYLDELKPALQ----TEELREAVLAVLRAALVVLTKLLA 114
Query: 794 PIL 796
P
Sbjct: 115 PFT 117
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the
transfer of valine to the 3'-end of its tRNA.
Length = 135
Score = 53.3 bits (129), Expect = 3e-07
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 680 IDTYRKLRNTI----RWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAF 735
++ R N + R++L L D E + ++ +L RL + + V EA + +
Sbjct: 6 VEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENY 65
Query: 736 NFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPI 795
F E L F + +Y ++ K LY + + ++ A + + ++ + P
Sbjct: 66 RFSEAATALYEFFWNDFCDWYLELVKPRLYGEDEEE--KKAARATLYYVLETILRLLHPF 123
Query: 796 LPFTAEEAWLSL 807
+PF EE W L
Sbjct: 124 MPFITEELWQRL 135
>gnl|CDD|35658 KOG0437, KOG0437, KOG0437, Leucyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 1080
Score = 46.9 bits (111), Expect = 3e-05
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 28/192 (14%)
Query: 630 NGEKMSKSKGNVVFPEEIISESGADVLRY-WAVNSDYHDDQRLGKNIIQTNIDTY-RKLR 687
N EKMSKS GN + E+ I + GAD R A D +D N ++ N + +L
Sbjct: 707 NSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVED----ANFVEANANAAILRLY 762
Query: 688 NTIRWMLGMLAHDTGNEPSLADMPA---LEQLMLHRLTELDQVVREAYDAFNFKEVVRQL 744
+ W+ M N SL PA +++ + + L AY+ FK+ ++
Sbjct: 763 TYVEWIEEMCE----NRSSLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALK-- 816
Query: 745 TNFSNAELSSFY-FDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEA 803
FY +D + R ++ + +API P AE
Sbjct: 817 --------YGFYDLQAARDMYRELCGEGMHR----DLVFRFIETQTLLLAPICPHLAEYI 864
Query: 804 WLSLNPEAVSVH 815
W ++ + SV+
Sbjct: 865 WRTVLKKNFSVN 876
Score = 38.5 bits (89), Expect = 0.010
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 23 RAKLPQKESELITYWQKIRLF--DKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILK 80
R L + E + W ++F D E + F + PY NG +H+GHA +
Sbjct: 11 RDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKV 70
Query: 81 DVIVRSFQMRNFNACFVPGWDCHGLPI 107
+ +++ N F G+ C G+PI
Sbjct: 71 EFASGYERLQGKNVLFPFGFHCTGMPI 97
Score = 36.5 bits (84), Expect = 0.036
Identities = 30/145 (20%), Positives = 60/145 (41%), Gaps = 7/145 (4%)
Query: 218 ILVGFPVKSSADYLIKSQIVIWTTTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTG 277
+L FP S+ ++ +V T P T+ G + +YG ++ +C+ F
Sbjct: 271 VLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFE--ACNETEVFIAT 328
Query: 278 KKLIISKNLAQSIANQTNVKIALVCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVAN 337
++ ++N++ + ++ + + DL S PL +++P+ +
Sbjct: 329 ER--AARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPM---LTILA 383
Query: 338 DCGTGFVHVAPSHGVEDFTAWNEAK 362
GTG V PS +DF A + K
Sbjct: 384 TKGTGVVTSVPSDSPDDFAALQDLK 408
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 46.8 bits (112), Expect = 3e-05
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 630 NGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDY 665
+GEKMSKS GN + + + + +VLR ++S Y
Sbjct: 171 DGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 46.0 bits (110), Expect = 5e-05
Identities = 26/126 (20%), Positives = 44/126 (34%), Gaps = 27/126 (21%)
Query: 684 RKLRNTIRWMLGMLAHDTGNEP-SLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVR 742
+L ++ + E + D +L RL L + EAY+ F+E
Sbjct: 11 LRLERFYELAEELIETEGELEELTFIDR-----WLLSRLNRLIKETTEAYENMQFREA-- 63
Query: 743 QLTNFSNAELSSFYFDIRKD-SLYCDSPSSLKRLSSIAVIRILCRHLIIWI---APILPF 798
L ++++ D Y +R + +L R + +W AP P
Sbjct: 64 ---------LKEGLYELQNDLDWY------RERGGAGMNKDLLRRFIEVWTRLLAPFAPH 108
Query: 799 TAEEAW 804
AEE W
Sbjct: 109 LAEEIW 114
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 41.7 bits (99), Expect = 0.001
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 705 PSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFS---NAELSSFYFDIRK 761
P + ++ +L EL + V EA + F++ + ++ + N Y D
Sbjct: 29 PEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANK-----YIDETA 83
Query: 762 D-SLYCDSPSSLKRLSSIAVIRILC---RHLIIWIAPILPFTAEEAW 804
L + +RL+ V+ +L R L I ++P +P TAE+
Sbjct: 84 PWKLAKEE--DPERLA--TVLYVLLELLRILAILLSPFMPETAEKIL 126
>gnl|CDD|145212 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 355
Score = 40.7 bits (96), Expect = 0.002
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLR 687
+ G KMS SKGN + EE + + + LR+ +RL ++I +D Y +L
Sbjct: 273 LKGGGKMSSSKGNGITIEEWLEYAPPESLRFLMFRVKPKKAKRLDFDVIPKLVDEYDRLE 332
Query: 688 N 688
Sbjct: 333 R 333
>gnl|CDD|37218 KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 586
Score = 38.8 bits (90), Expect = 0.008
Identities = 27/148 (18%), Positives = 55/148 (37%)
Query: 605 LLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAVNSD 664
+ +S A + + + H + NGEKMSKS N + +E + + LR +
Sbjct: 277 IAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQ 336
Query: 665 YHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTEL 724
+ + ++ + + L N + +L E L + T +
Sbjct: 337 WRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAV 396
Query: 725 DQVVREAYDAFNFKEVVRQLTNFSNAEL 752
+ + +D E +R+L + NA +
Sbjct: 397 HAALCDNFDTPRVMEAIRELVSQGNAYI 424
>gnl|CDD|144375 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 36.7 bits (85), Expect = 0.034
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 589 VYLEGSDQHRGWFQHSLLESCATR--GSTP-FTSLITHGFSVD--ENGEKMSKSKGNVVF 643
+Y+ G+DQH H A G P ++ GF V ++G++MS GNVV
Sbjct: 234 IYVLGADQH----GHIQRLFAAAAALGYDPESVEVLHIGFGVVLGKDGKRMSTRAGNVVT 289
Query: 644 PEEIISESGADVLRYWAVNSDYHDDQ 669
++++ E+ + N D D+
Sbjct: 290 LDDLLDEALERAMDIKEKNRDLTADE 315
>gnl|CDD|31574 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 35.6 bits (82), Expect = 0.062
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRYW--AVNSDYHDDQRLGKNIIQTNIDTYRK 685
+ G KMS SKGNV+ + + + +VLRY + H D I++ +D Y +
Sbjct: 272 LKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILK-LVDEYDR 330
Query: 686 LRN 688
L
Sbjct: 331 LER 333
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. The class I LysRS is found only in archaea and
some bacteria and has evolved separately from class II
LysRS, as the two do not share structural or sequence
similarity.
Length = 353
Score = 33.8 bits (78), Expect = 0.25
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 628 DENGEKMSKSKGNVVFPEEIISESGADVLRY 658
+ G KMS SKGNV+ P + + + +VLRY
Sbjct: 270 LKGGGKMSSSKGNVITPSDWLEVAPPEVLRY 300
Score = 28.4 bits (64), Expect = 8.8
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 44 DKIRESAVGRKNFTLHDG--PPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWD 101
+KI E G++ + + G P +GHIHIG+ I D++ R+ + F + WD
Sbjct: 9 EKIIEERKGKEKYVVASGISP---SGHIHIGNFREVITADLVARALRDLGFEVRLIYSWD 65
Query: 102 CH--------GLPIEWKVENEYLAKGKKKDDIP 126
+ +P ++ +Y+ G +P
Sbjct: 66 DYDRLRKVPPNVPESYE---QYI--GMPLSSVP 93
>gnl|CDD|110410 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 33.5 bits (77), Expect = 0.32
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 607 ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRY 658
+S A H + GEKMSKS GN + +++ +LRY
Sbjct: 228 QSEA-AFDQQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRY 278
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 33.0 bits (76), Expect = 0.42
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 587 ADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVF--- 643
D+ L GSDQ +L + +T +G KMSKS+GN ++
Sbjct: 152 VDLQLGGSDQ---RGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIWDPV 208
Query: 644 ---PEE----IISESGADVLRY 658
P + I + DVL +
Sbjct: 209 LDSPYDVYQKIRNAFDPDVLEF 230
>gnl|CDD|30368 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 30.2 bits (68), Expect = 2.6
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 582 KLAWPAD--VYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITH---GFSVDENGEKMSK 636
K D +Y+ G+DQH G F+ L G P ++ H G G KMS
Sbjct: 329 KFERGFDKLIYVLGADQH-GHFKQ-LKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMST 386
Query: 637 SKGNVVFPEEIISESG 652
GNVV ++++ E+G
Sbjct: 387 RAGNVVTLDDLLDEAG 402
Score = 29.4 bits (66), Expect = 4.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 66 NGHIHIGHALNKILKDVIVRSFQMRNFN 93
G +HIGH N I+ D + R + ++
Sbjct: 129 TGPLHIGHLRNAIIGDSLARILEFLGYD 156
>gnl|CDD|36192 KOG0974, KOG0974, KOG0974, WD-repeat protein WDR6, WD repeat
superfamily [General function prediction only].
Length = 967
Score = 29.9 bits (67), Expect = 3.2
Identities = 49/294 (16%), Positives = 90/294 (30%), Gaps = 41/294 (13%)
Query: 641 VVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLG----- 695
P II+ R W VN T ++ Y + W +
Sbjct: 225 CFLPNRIITVGEDCTCRVWGVNG--------------TQLEVYDEHSGKGIWKIAVPIGV 270
Query: 696 MLAHDTGNEPSLADMPALEQLMLHRLTE----LDQVVREAYDAFNFKEVVRQLTNFSNAE 751
++ GN+ +L + L L E L +V+ D F + + N
Sbjct: 271 IIKVTGGNDSTLK-LWDLNGRGLEGHVEQSSLLSSIVKLKDDQFVKCDTLLNFANHGGKL 329
Query: 752 LSSFYFDIRKDS--LYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAEEAWLSLN- 808
+ + + +S S L+ + S + + I AW
Sbjct: 330 SIL---GNKGEKELITFESDSMLRIIFSCTNDDWV--AHMSNKGDIY-----VAWHQNTI 379
Query: 809 -PEAVSVHLEL--FPIIPLEWQNACLSKKWGKILQLRKVVTSALEIERKAKHIGSSLETA 865
S+H +L PI + + SK +Q+R ++ +LE +I S E
Sbjct: 380 VITTSSLHRKLSANPISQVCEASYVASKLIDGSIQVRN-LSGSLESFADVLNIRSLKEFR 438
Query: 866 PTLYITDSSLISNIEGENLAEICITSDITIVHSNGPTDAFRLSDVPNVSVQCLK 919
L S +E + ++ + + + P D LS + +
Sbjct: 439 LPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPNDDIVLSLSRSHELDTGS 492
>gnl|CDD|31633 COG1444, COG1444, Predicted P-loop ATPase fused to an
acetyltransferase [General function prediction only].
Length = 758
Score = 29.5 bits (66), Expect = 4.5
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 899 NGPTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSAR 947
N P D RL D P+ + L+A K W+V ++ GL D+
Sbjct: 456 NSPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLG 504
>gnl|CDD|146587 pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase. Thought
to catalyse 2-phosphosulpholactate = sulpholactate +
phosphate. Probable magnesium cofactor. Involved in the
second step of coenzyme M biosynthesis. Inhibited by
vanadate in Methanococcus jannaschii. Also known as the
ComB family.
Length = 231
Score = 29.5 bits (67), Expect = 4.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 393 GARVLDDAGEKGNANEVVIAALINACAILNR 423
G R L A NA V+I + +NA A+
Sbjct: 100 GTRALKRAR---NAKRVLIGSFVNASAVAEY 127
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS)
cataytic core domain. These enzymes attach Gln to the
appropriate tRNA. Like other class I tRNA synthetases,
they aminoacylate the 2'-OH of the nucleotide at the 3'
end of the tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate.
GlnRS contains the characteristic class I HIGH and
KMSKS motifs, which are involved in ATP binding. These
enzymes function as monomers. Archaea and most bacteria
lack GlnRS. In these organisms, the
"non-discriminating" form of GluRS aminoacylates both
tRNA(Glu) and tRNA(Gln) with Glu, which is converted to
Gln when appropriate by a transamidation enzyme.
Length = 238
Score = 29.1 bits (66), Expect = 5.1
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 62 PPYANGHIHIGHA 74
PP NG++HIGHA
Sbjct: 7 PPEPNGYLHIGHA 19
>gnl|CDD|30511 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 28.7 bits (64), Expect = 9.3
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 587 ADVYLEGSDQHRGWFQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVF 643
D+ L GSDQ W R +T +G+KM KS+G V+
Sbjct: 181 KDLQLGGSDQ---WGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVW 234
>gnl|CDD|36362 KOG1147, KOG1147, KOG1147, Glutamyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 712
Score = 28.4 bits (63), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 62 PPYANGHIHIGHALNKILKDVIVRSFQ 88
PP +G++HIGHA +L +++Q
Sbjct: 206 PPEPSGYLHIGHAKAALLNQYFAQAYQ 232
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.134 0.409
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 11,874,913
Number of extensions: 636280
Number of successful extensions: 1467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 71
Length of query: 963
Length of database: 6,263,737
Length adjustment: 103
Effective length of query: 860
Effective length of database: 4,038,010
Effective search space: 3472688600
Effective search space used: 3472688600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)