BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(963 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 1998 bits (5175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/963 (100%), Positives = 963/963 (100%)
Query: 1 MNSESKANYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHD 60
MNSESKANYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHD
Sbjct: 1 MNSESKANYSGTLYLPRTDFPMRAKLPQKESELITYWQKIRLFDKIRESAVGRKNFTLHD 60
Query: 61 GPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGK 120
GPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGK
Sbjct: 61 GPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVENEYLAKGK 120
Query: 121 KKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKI 180
KKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKI
Sbjct: 121 KKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQIASELLKI 180
Query: 181 AESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWT 240
AESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWT
Sbjct: 181 AESDQIYRGIKPIMWSIAEQTTLAEAEIEYHDVDSDSILVGFPVKSSADYLIKSQIVIWT 240
Query: 241 TTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIAL 300
TTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIAL
Sbjct: 241 TTPWTIPGNRAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIAL 300
Query: 301 VCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNE 360
VCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNE
Sbjct: 301 VCDVKAEDLSKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNE 360
Query: 361 AKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAI 420
AKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAI
Sbjct: 361 AKDILLNRSVDIKVPSPVDGRGFYTTEAPGFSGARVLDDAGEKGNANEVVIAALINACAI 420
Query: 421 LNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSG 480
LNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSG
Sbjct: 421 LNRSIVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSG 480
Query: 481 KNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFS 540
KNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFS
Sbjct: 481 KNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRIIKTFKDQGSDAWFS 540
Query: 541 EGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGW 600
EGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGW
Sbjct: 541 EGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLGKDPKLAWPADVYLEGSDQHRGW 600
Query: 601 FQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWA 660
FQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWA
Sbjct: 601 FQHSLLESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWA 660
Query: 661 VNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHR 720
VNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHR
Sbjct: 661 VNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHR 720
Query: 721 LTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAV 780
LTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAV
Sbjct: 721 LTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAV 780
Query: 781 IRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQ 840
IRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQ
Sbjct: 781 IRILCRHLIIWIAPILPFTAEEAWLSLNPEAVSVHLELFPIIPLEWQNACLSKKWGKILQ 840
Query: 841 LRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEGENLAEICITSDITIVHSNG 900
LRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEGENLAEICITSDITIVHSNG
Sbjct: 841 LRKVVTSALEIERKAKHIGSSLETAPTLYITDSSLISNIEGENLAEICITSDITIVHSNG 900
Query: 901 PTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAAVLHELGYPKN 960
PTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAAVLHELGYPKN
Sbjct: 901 PTDAFRLSDVPNVSVQCLKAEGKKCARSWRVTKDVGLDASYPDVSARDAAVLHELGYPKN 960
Query: 961 SNV 963
SNV
Sbjct: 961 SNV 963
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 155 bits (391), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 196/829 (23%), Positives = 326/829 (39%), Gaps = 121/829 (14%)
Query: 30 ESELITYWQKIRLFDKIRESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQM 89
E + + W + F +G F + PP G +H+GHA N ++D+++R +M
Sbjct: 13 EQKSVEKWNSVDAFRIDVAPKLGSGVFCIAMPPPNVTGSLHMGHAFNTTIQDIMIRFERM 72
Query: 90 RNFNACFVPGWDCHGLPIEWKVENEYLAKGK-KKDDIPVNEFRQACRDSASAWVKIQS-- 146
R N + PG D G+ + VE+ A+ ++DI R A + W K
Sbjct: 73 RGKNVLWQPGTDHAGIATQITVESRLFAQSSLTREDIG----RDAFIEKVWEWKKESGGS 128
Query: 147 --KEFQRLGIVGDFENPYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLA 204
+ +RLG D+ TM + + + + + IYR + + W + +T+++
Sbjct: 129 ILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVLYKDGLIYRDKRIVNWDPSLKTSVS 188
Query: 205 EAEIEYHDVDSDSILVGFPVKSSA---------------DYLIKSQIVIWTTTPWTIPGN 249
+ E+ +VD + V +P+ D+ ++ I++ TT P T+ G+
Sbjct: 189 DLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDDDAKPIDWEVRDYIIVSTTRPETMFGD 248
Query: 250 RAIAFSSNHQYGLYDVISCSGQHTFDTGKKLIISKNLAQSIANQTNVKIALVCDVKAEDL 309
AIA H D K +I K I +
Sbjct: 249 VAIAV-----------------HPDDYRYKELIGKYATLPIVGRL--------------- 276
Query: 310 SKTMCSHPLKKLGYTFSVPLIDAEYVANDCGTGFVHVAPSHGVEDFTAWNEAKDILLNRS 369
+P++ Y + G G V V P+H DF AK L
Sbjct: 277 -----------------IPIVSDVYPDPEFGDGAVKVTPAHDFNDFEI---AKRHGLG-F 315
Query: 370 VDIKVPSPVDGRGFYTTEAPGFSGARVLDDA---------GEKGNANEVVIAALINACAI 420
++I P + +E F VL D G A I +L+ +
Sbjct: 316 INILTPEA----KIFLSENESFLENIVLSDEARNIFSEFEGLDCFAARSKIVSLLEKSNL 371
Query: 421 LNRS-IVKHSYPHSWRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSS 479
L+++ +H PH RS I T QW+L D K+ S +RS ++ + F P S
Sbjct: 372 LDKTDSYRHIVPHCERSGVTIEPCITEQWYL--DAKVLAESAIRS---AKNGCLSFIPQS 426
Query: 480 GKNRLRSMIENRPDWLLSRQRNWGVPICFFYNEKGEILLDKAINDRI---IKTFKDQGSD 536
+EN W +SRQ WG I +Y+ G++ ++ + + I + Q +D
Sbjct: 427 WDKSYYEWLENIQPWCISRQIWWGHQIPVWYSPDGKLFVENTEDAALRSAIDYYLSQDND 486
Query: 537 AWFSEGSRDFFLGDRASEPWIQSKDILDVWFDSACTHTILLG-----KDPKLAWPADVYL 591
+ R S+ + +D+LD WF SA LG + K +P V +
Sbjct: 487 --MTVKVRKMIKDGNISDLLKRDEDVLDTWFSSALWPFASLGWPEQTAELKTYYPTSVLV 544
Query: 592 EGSDQHRGWFQHSLL------ESCATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPE 645
G D W ++ + +G PF + H D+NG+KMSKSKGNVV P
Sbjct: 545 TGFDILFFWVARMMMMGLYFMKDAEGKGIEPFHIVYMHALVRDKNGQKMSKSKGNVVDPI 604
Query: 646 EIISESGADVLR-YWAVNSDYHDDQRLGKNIIQTNIDTYRKLRNTIRW-MLGMLAHDTGN 703
++I + GAD LR Y+++ + D L I + K N IR+ + H
Sbjct: 605 DVIDQYGADALRFYFSIMAVQGRDINLDLERIAGYRNFITKFWNAIRFSKMKNARHSVSF 664
Query: 704 EPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVVRQLTNFSNAELSSFYFDIRKDS 763
P + + ++ RL + V + F +V L F EL +Y + K
Sbjct: 665 VPQDVKW-IVNKWIIKRLATVINDVTVGMENHRFNDVSAVLYRFVWDELCDWYVEFIKSI 723
Query: 764 L-YCDSPSSLKRLSSIA-VIRILCRHLIIWIAPILPFTAEEAWLSLNPE 810
L DS + LS + V+ +C+ L PI+PF E+ + ++P+
Sbjct: 724 LNQKDSELVSETLSCFSYVLYNVCKLL----HPIIPFVTEDLYSHVSPQ 768
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 157/423 (37%), Gaps = 98/423 (23%)
Query: 457 GDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRP-----------DWLLSRQRNWGVP 505
GDG + S L + + + + I+N P DW +SRQR+WG P
Sbjct: 384 GDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCP 443
Query: 506 ICFFYNEK-GEILLDKAINDRIIKTFKD-----QGSDAWFSEGSRDFFLGDRASEPWIQS 559
I + +K G + L K D ++ +D G+ + F SE ++
Sbjct: 444 IPVIHCQKCGIVELPK--EDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEA-LRE 500
Query: 560 KDILDVWFDSACTHTILL---GKDP------KLAWPADVYLEGSDQ------HRGWFQHS 604
D +D + DS+ + + KDP + +P D Y+ G + + +F H
Sbjct: 501 TDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHI 560
Query: 605 LLESCATRGSTPFTSLITHGFSVDENG--------------------------------- 631
L + PF L T G V E
Sbjct: 561 LKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDN 620
Query: 632 --------EKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTN--ID 681
EKMSKSK NV+ P ++I GAD R + ++ D ++II +N +D
Sbjct: 621 SKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPD-----RDIIWSNKGVD 675
Query: 682 TYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVV 741
+ + I W L A D S +L + + T+ + + E Y +F + V
Sbjct: 676 STYQFIQQI-WRLIYNAKDELQTSSTKKDISL----ISKSTKFLERIEENYQNLSFNKAV 730
Query: 742 RQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAE 801
+ N +S +I K D I+ IR + LII ++P++P AE
Sbjct: 731 ANIHELVNV-ISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAE 780
Query: 802 EAW 804
E W
Sbjct: 781 ECW 783
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 30/168 (17%)
Query: 48 ESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPI 107
E+ +K + + + PY +G+IH+GH N ++ DV+ R + ++ GWD G+P
Sbjct: 28 ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPA 87
Query: 108 EWKVENEYLAKGKKKDDIPVNEFRQACRD---SASAW----VKIQSKEFQRLGIVGDFEN 160
E A R+ W +K+ K+ Q +G+ D+
Sbjct: 88 E-----------------------NAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSK 124
Query: 161 PYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEI 208
+ T + L + + I R + W EQT LA ++
Sbjct: 125 DFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV 172
Score = 25.0 bits (53), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 434 WRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGK 481
WRS P+ R+ QWF + S L L +E + +P K
Sbjct: 178 WRSDAPVEQRSLPQWFFKI-------SDLSQELLDSIETLSEWPEKVK 218
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 115/269 (42%), Gaps = 47/269 (17%)
Query: 562 ILDVWFDSACTHTILLG--KDPKLA----WPADVYLEGSDQHRGWFQHSLLESCATRGST 615
I+ VW D+ + G +P + WPAD+++ G D R F + +
Sbjct: 227 IMYVWIDALTNYLTTTGYLDNPDGSKAKFWPADLHVIGKDILR--FHAIYWPAFLLSANL 284
Query: 616 PF-TSLITHGFSVDENGEKMSKSKGNVVFPEEIISESGADVLRYWAV------NSDYHDD 668
P + +HGF + GEK+SKS GNV+ P E+I E G D LRY+ V ++D
Sbjct: 285 PLPKKVFSHGFIL-HKGEKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDK 343
Query: 669 QRLGKNIIQTNIDTYRKLRNTIRWMLGMLAHD-TGNEPSLADMPALEQLMLHRLTELDQV 727
L K + N D + N + + M+ D G P+ ++ +L + + Q
Sbjct: 344 DGLKKRV---NADLANGIGNLVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQE 400
Query: 728 VREAYDAFNFKEVVRQLTNFSNAELSSF------YFDIRKDSLYCDSPSSLK-----RLS 776
+RE + QL + + A++ S YFD +K P LK R S
Sbjct: 401 IRE--------NMQNQLIHRALAQVISLVSEVDRYFDAQK-------PWELKKTNPDRAS 445
Query: 777 SIAVIRI-LCRHLIIWIAPILPFTAEEAW 804
++ + + + R L I + +P A + +
Sbjct: 446 TVLYVTVEVIRQLAILLQAFVPKLANKIF 474
Score = 40.8 bits (94), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 22/158 (13%)
Query: 53 RKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPIEWKVE 112
R+ + Y N HIGHA I+ DV+ R ++ + F G D HG I +
Sbjct: 4 REKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKAAQ 63
Query: 113 NEYLAKGKKKDDIPVNEFRQACRDSASAWVKIQSKEFQRLGIVGDFENPYTTMTRESEAQ 172
N + + +V S+ F+ + V D T E
Sbjct: 64 NAGV--------------------TTKVFVDQNSRNFRDMADVLDISYDDFIRTTEKRHH 103
Query: 173 IASELL--KIAESDQIYRGIKPIMWSIAEQTTLAEAEI 208
+L KI++ IY+G +S+ ++ + E+
Sbjct: 104 DTCRILWKKISDKGDIYKGCYSGWYSLRDEAYYNDDEV 141
>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 586
Score = 28.9 bits (63), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 589 VYLEGSDQHRGWFQHSLLESCATRGS---TPFTSLITHGFSVDENGE--KMSKSKGNVVF 643
+Y+ GSD H G+ + LE+ A S L+ + +G KMSK G+ +
Sbjct: 353 IYVMGSD-HSGYVKR--LEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFIT 409
Query: 644 PEEIISESGADVLRY---WAVNSDYHD 667
++ E G+D +R+ W NS+ D
Sbjct: 410 LRHVVDEVGSDSVRFMMLWRKNSELLD 436
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 25.8 bits (55), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 522 INDRIIKTFKDQGSDAWFSEGSRDFFLGD 550
I+D + K KD G+D+ FSE R +GD
Sbjct: 8 ISDILRKRIKDFGNDSEFSEIGRVLSIGD 36
>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 25.4 bits (54), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 609 CATRGSTPFTSLITHGFSVDENGEKMSKSKGNVVFPEEII 648
CA R I +GF ++ G KMSKS GN + E++
Sbjct: 254 CADRIEKTANIWIHNGF-LNLEGRKMSKSNGNFITINELL 292
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 634,526
Number of Sequences: 1233
Number of extensions: 26918
Number of successful extensions: 95
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 15
length of query: 963
length of database: 328,796
effective HSP length: 83
effective length of query: 880
effective length of database: 226,457
effective search space: 199282160
effective search space used: 199282160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)