RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780446|ref|YP_003064859.1| hypothetical protein
CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62]
         (171 letters)



>2vqp_A Matrix protein; viral protein, peripheral membrane protein,
           RSV, virion, envelope protein; HET: GOL; 1.60A {Human
           respiratory syncytial virus A2} (A:125-257)
          Length = 133

 Score = 28.0 bits (62), Expect = 0.65
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 140 AIPNAKIAPYQGIILL 155
           AI NAKI PY G++L+
Sbjct: 65  AITNAKIIPYSGLLLV 80


>2yqy_A TT2238, hypothetical protein TTHA0303; four-helix-bundle,
           NPPSFA, national project on protein structural and
           functional analyses; 2.00A {Thermus thermophilus HB8}
           (A:39-149)
          Length = 111

 Score = 25.6 bits (56), Expect = 4.3
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 17/75 (22%)

Query: 45  GLVVNKDGKFK-PIGYLPSDRLKVFEFKYPCLYKEDQEQVVLCSSSEECVMSRWNAAVHT 103
                KDGK + P G  P   L +           ++   +L  +    +       V  
Sbjct: 45  KPGEFKDGKPQAPEGVRPKGGLSL-----------EEVLALLDRARAFLL-----EEVAK 88

Query: 104 KEILNEKNMPYPFLG 118
            +  N    P+PF G
Sbjct: 89  ADPQNPATFPHPFFG 103


>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
           protein LOLD; structural genomics, NPPSFA; 1.70A
           {Aquifex aeolicus VF5} PDB: 2pcl_A (A:)
          Length = 224

 Score = 24.9 bits (54), Expect = 6.7
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 116 FLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIR 169
           F+ I   S S  STL+  +GL +        AP +G + L+ ++++      + 
Sbjct: 32  FVSIIGASGSGKSTLLYILGLLD--------APTEGKVFLEGKEVDYTNEKELS 77


>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES
           1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A*
           3kr5_A* (A:1-193)
          Length = 193

 Score = 24.9 bits (54), Expect = 6.8
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 47  VVNKDGKFKPIGY-LPSDRLK--VFEFKYPCLYKEDQEQVVLCSSSEECVMSRWNAAVHT 103
           VV+ D    PI Y  P   +K  V++ K  C  +E     ++ +  +E    + ++ V+ 
Sbjct: 8   VVSLDPTSIPIEYNTPIHDIKVQVYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVND 67

Query: 104 K---EILNEKNM---------PYPFLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQG 151
           K   E L ++NM            F     N NSVA   + C  + +L+  + K      
Sbjct: 68  KQVSEFLKDENMEKFNVKLGTSKHFYMFNDNKNSVAVGYVGCGSVADLSEADMKRVVLSL 127

Query: 152 IILLDDRK 159
           + +L D K
Sbjct: 128 VTMLHDNK 135


>1b0u_A Histidine permease; ABC transporter, transport protein; HET:
           ATP; 1.50A {Salmonella typhimurium} (A:)
          Length = 262

 Score = 24.3 bits (52), Expect = 9.5
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

Query: 116 FLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQN 165
            + I  +S S  ST +RC+   E         P +G I+++ + IN +++
Sbjct: 34  VISIIGSSGSGKSTFLRCINFLE--------KPSEGAIIVNGQNINLVRD 75


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,228,097
Number of extensions: 50270
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 8
Length of query: 171
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 89
Effective length of database: 2,184,039
Effective search space: 194379471
Effective search space used: 194379471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)