RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780446|ref|YP_003064859.1| hypothetical protein
CLIBASIA_01655 [Candidatus Liberibacter asiaticus str. psy62]
(171 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.4 bits (102), Expect = 2e-05
Identities = 27/191 (14%), Positives = 51/191 (26%), Gaps = 86/191 (45%)
Query: 2 ISAESDTSQNFTIVLSQLTIGL-------FFAHRLLVVFDSNKEFVAEL----DGLVVNK 50
+ A S T+ L L F A +L ++F L +G +
Sbjct: 1 MDAYSTRP--LTLSHGSLEHVLLVPTASFFIASQL------QEQFNKILPEPTEGFAADD 52
Query: 51 D--------GKFKPIGYLPSDRLKVFEFKYPCLYKEDQEQVVLCSSSEECVMSRWNAAVH 102
+ GKF +GY+ S + E + ++ +
Sbjct: 53 EPTTPAELVGKF--LGYV-SSLV------------EPSKV----GQFDQVL--------- 84
Query: 103 TKEILN--EKNMPYPFLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKI 160
L E +L G + +++A+ L L ++
Sbjct: 85 -NLCLTEFENC----YLE-GNDIHALAAKL-----------------------LQENDTT 115
Query: 161 NEIQNNWIRCY 171
I+ Y
Sbjct: 116 LVKTKELIKNY 126
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 29.8 bits (67), Expect = 0.29
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 16/53 (30%)
Query: 118 GIGKNSNSVASTLIRC-MGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIR 169
G GK STL + P G +L+D + NW+R
Sbjct: 45 GSGK------STLTKLIQRF---------YIPENGQVLIDGHDLALADPNWLR 82
>2vqp_A Matrix protein; viral protein, peripheral membrane protein, RSV,
virion, envelope protein; HET: GOL; 1.60A {Human
respiratory syncytial virus A2}
Length = 257
Score = 28.4 bits (63), Expect = 0.85
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 140 AIPNAKIAPYQGIILL 155
AI NAKI PY G++L+
Sbjct: 189 AITNAKIIPYSGLLLV 204
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc
7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Length = 289
Score = 27.8 bits (62), Expect = 1.3
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 22/58 (37%)
Query: 13 TIVLSQLTIGLF-----FAHRL----------LVVFDSNKEFVAEL-------DGLVV 48
IVLSQ+ I ++ L V +S + + D L++
Sbjct: 4 DIVLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLIL 61
>3o4x_E Protein diaphanous homolog 1; autoinhibition, actin nucleator,
actin binding, protein BIND; 3.20A {Mus musculus} PDB:
2bap_D
Length = 467
Score = 27.8 bits (61), Expect = 1.3
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 5 ESDTSQNFTIVLSQLTIGLFFAHRLLVVFDSNKEFVAELDGLVVNKDGKFKPIGYLPSDR 64
+S T+QN +I L + +++ + + + L+ K P P
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLI-----KQMPE---PEQL 154
Query: 65 LKVFEFKYPCLYKEDQEQVVLCSSSEECVMSRWNA 99
+ E K + EQ + + + R NA
Sbjct: 155 KMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNA 189
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 27.0 bits (60), Expect = 2.1
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 15/52 (28%)
Query: 118 GIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIR 169
G GK STL+ ++ +G I +D + I R
Sbjct: 57 GSGK------STLLSAF---------LRLLNTEGEIQIDGVSWDSITLEQWR 93
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC
transporters, ATPase, walker-A, NBD, transport protein;
HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP:
c.37.1.12 PDB: 1f3o_A*
Length = 235
Score = 25.9 bits (57), Expect = 4.2
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 116 FLGIGKNSNSVASTLIRCMGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIR 169
F+ I S S ST++ +G + P +G + +D+ K N++ ++ +
Sbjct: 33 FVSIMGPSGSGKSTMLNIIGCLD--------KPTEGEVYIDNIKTNDLDDDELT 78
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 26.1 bits (57), Expect = 4.4
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 16/53 (30%)
Query: 118 GIGKNSNSVASTLIRC-MGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIR 169
G GK ST+++ + P G + LD ++I ++ W+R
Sbjct: 1069 GCGK------STVVQLLERFYD---------PMAGSVFLDGKEIKQLNVQWLR 1106
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 25.8 bits (56), Expect = 4.7
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 10/55 (18%)
Query: 116 FLGIGKNSNSVASTLIRC-MGLKELAIPNAKIAPYQGIILLDDRKINEIQNNWIR 169
+ + S S ST+ +G IL+D + E +R
Sbjct: 371 TVALVGRSGSGKSTIASLITRF---------YDIDEGHILMDGHDLREYTLASLR 416
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer; HET: FYA; 2.50A {Thermus thermophilus} SCOP:
a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1
PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B*
2amc_B* 3hfz_B* 2iy5_B*
Length = 785
Score = 25.3 bits (54), Expect = 7.9
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 33 FDSNKEFVAELDGLVVNKDGKFKPIGYLPSDR 64
+ + EL + +K F+ P+
Sbjct: 663 LELPPVHLFELRLPLPDKPLAFQDPSRHPAAF 694
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.137 0.408
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,409,009
Number of extensions: 59651
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 13
Length of query: 171
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 85
Effective length of database: 3,608,246
Effective search space: 306700910
Effective search space used: 306700910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)