Query gi|254780447|ref|YP_003064860.1| hypothetical protein CLIBASIA_01660 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 47
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 12:52:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780447.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1i27_A Transcription factor I 8.1 1.4E+02 0.0041 13.8 0.9 12 22-33 25-36 (73)
2 >1mus_A TN5 transposase; hairp 7.4 1.4E+02 0.0041 13.8 0.7 13 9-21 61-73 (93)
3 >1nha_A TFIIF-alpha, transcrip 6.6 1.9E+02 0.0057 13.1 1.0 12 22-33 34-45 (82)
4 >1n93_X P40 nucleoprotein; RNA 4.9 1E+02 0.003 14.4 -1.2 29 16-44 51-92 (110)
5 >1e50_B Core-binding factor CB 4.7 89 0.0026 14.7 -1.7 12 9-20 104-115 (134)
6 >3clq_A Uncharacterized protei 4.4 2.2E+02 0.0067 12.8 0.2 22 10-33 29-50 (71)
7 >1u04_A Argonaute, hypothetica 3.8 2.7E+02 0.0079 12.5 0.2 14 8-21 142-155 (177)
8 >1wyy_A E2 glycoprotein; coile 3.0 4.5E+02 0.013 11.4 0.8 10 20-29 9-18 (149)
9 >2yue_A Protein neuralized; st 2.7 1.7E+02 0.0051 13.4 -1.7 19 7-25 55-73 (168)
10 >1g4y_B Calcium-activated pota 2.7 4.9E+02 0.014 11.3 0.7 8 11-18 33-40 (101)
No 1
>>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} (A:)
Probab=8.13 E-value=1.4e+02 Score=13.83 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=9.4
Q ss_pred HHHHHHHHHCCH
Q ss_conf 039999742023
Q gi|254780447|r 22 VTTDLLSKFAAG 33 (47)
Q Consensus 22 vttdllskfaag 33 (47)
-|+||++||-..
T Consensus 25 TT~eLl~KFk~k 36 (73)
T 1i27_A 25 TTKDLLKKFQTK 36 (73)
T ss_dssp CHHHHHHTSCHH
T ss_pred CHHHHHHHHHHC
T ss_conf 289999998532
No 2
>>1mus_A TN5 transposase; hairpin, DNA binding, transcription/DNA complex; HET: DNA; 1.90A {Escherichia coli} (A:385-477)
Probab=7.44 E-value=1.4e+02 Score=13.79 Aligned_cols=13 Identities=38% Similarity=1.035 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2464422254440
Q gi|254780447|r 9 HVNVLWEGWLSIG 21 (47)
Q Consensus 9 hvnvlwegwlsig 21 (47)
-+.++|+||.-+-
T Consensus 61 G~~tlW~Gl~rL~ 73 (93)
T 1mus_A 61 SWGALWEGWEALQ 73 (93)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 4759998999999
No 3
>>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} (A:)
Probab=6.60 E-value=1.9e+02 Score=13.13 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=9.3
Q ss_pred HHHHHHHHHCCH
Q ss_conf 039999742023
Q gi|254780447|r 22 VTTDLLSKFAAG 33 (47)
Q Consensus 22 vttdllskfaag 33 (47)
-|+||++||-..
T Consensus 34 Tt~eLl~KFk~k 45 (82)
T 1nha_A 34 TTKDLLKKFQTK 45 (82)
T ss_dssp CHHHHHHHTTSS
T ss_pred CHHHHHHHHHHC
T ss_conf 399999999862
No 4
>>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} (X:129-238)
Probab=4.93 E-value=1e+02 Score=14.43 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHH
Q ss_conf 25444003999974202-------------379999999875
Q gi|254780447|r 16 GWLSIGVTTDLLSKFAA-------------GSFLFILLLRAF 44 (47)
Q Consensus 16 gwlsigvttdllskfaa-------------gsflfilllraf 44 (47)
|-++-|-+.|||+-|.+ |+|.|-+|...|
T Consensus 51 ~R~~HgEsA~LL~~~n~~~AIdWIns~PWVG~l~~tlL~~dF 92 (110)
T 1n93_X 51 NRPSHGETATLLQMFNPHEAIDWINGQPWVGSFVLSLLTTDF 92 (110)
T ss_dssp TCTTHHHHCCTTTTCCTHHHHHHHHTSTTHHHHHHHHHHCCC
T ss_pred CCCCCCCHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHCCC
T ss_conf 898766304588743950000101168507789899883356
No 5
>>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} (B:)
Probab=4.70 E-value=89 Score=14.71 Aligned_cols=12 Identities=42% Similarity=1.351 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 246442225444
Q gi|254780447|r 9 HVNVLWEGWLSI 20 (47)
Q Consensus 9 hvnvlwegwlsi 20 (47)
-|-|.|.||+..
T Consensus 104 GVCV~~rGwidl 115 (134)
T 1e50_B 104 GVCVIWKGWIDL 115 (134)
T ss_dssp TEEEEEEEEEET
T ss_pred CEEEEEEEEEEH
T ss_conf 458999878614
No 6
>>3clq_A Uncharacterized protein; APC29596.3, conserved protein of unknown function, structural genomics, PSI-2, protein structure initiative; 2.50A {Enterococcus faecalis V583} (A:40-110)
Probab=4.36 E-value=2.2e+02 Score=12.83 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 464422254440039999742023
Q gi|254780447|r 10 VNVLWEGWLSIGVTTDLLSKFAAG 33 (47)
Q Consensus 10 vnvlwegwlsigvttdllskfaag 33 (47)
.-+|+|||-.-- .+-...++.|
T Consensus 29 ga~LfEGwA~d~--eeA~~ll~sG 50 (71)
T 3clq_A 29 GALVFEGLAKDL--ADADRVARSG 50 (71)
T ss_dssp HHHHHHTSCSSH--HHHHHHHTTT
T ss_pred HHHHHHHCCCCH--HHHHHHHHCC
T ss_conf 999875304899--9999999779
No 7
>>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H, hydrolase/gene regulation complex; 2.25A {Pyrococcus furiosus dsm 3638} (A:365-541)
Probab=3.81 E-value=2.7e+02 Score=12.49 Aligned_cols=14 Identities=7% Similarity=-0.061 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 12464422254440
Q gi|254780447|r 8 MHVNVLWEGWLSIG 21 (47)
Q Consensus 8 mhvnvlwegwlsig 21 (47)
..++.+|++|-.+.
T Consensus 142 ~~~~~l~~~~~K~d 155 (177)
T 1u04_A 142 VNEDTLKNKRDKYD 155 (177)
T ss_dssp EEHHHHHHCEETTE
T ss_pred ECCCCCCCCCCCCC
T ss_conf 63210357665422
No 8
>>1wyy_A E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 2.20A {Sars coronavirus} (A:)
Probab=3.01 E-value=4.5e+02 Score=11.44 Aligned_cols=10 Identities=50% Similarity=0.793 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q ss_conf 4003999974
Q gi|254780447|r 20 IGVTTDLLSK 29 (47)
Q Consensus 20 igvttdllsk 29 (47)
+|+|+|.|.+
T Consensus 9 ~g~t~~vL~~ 18 (149)
T 1wyy_A 9 IGVTQNVLYE 18 (149)
T ss_dssp CSCHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 7834999998
No 9
>>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster} (A:)
Probab=2.72 E-value=1.7e+02 Score=13.38 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 2124644222544400399
Q gi|254780447|r 7 LMHVNVLWEGWLSIGVTTD 25 (47)
Q Consensus 7 lmhvnvlwegwlsigvttd 25 (47)
+..++--|.|-|.||+|+-
T Consensus 55 I~~~~~~wsGsl~iGvTs~ 73 (168)
T 2yue_A 55 FAEISNNWNGGIRFGFTSN 73 (168)
T ss_dssp EEECCSSSSSCCEEEEESS
T ss_pred EEECCCCCCCEEEEEEEEC
T ss_conf 9981588541489999707
No 10
>>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signaling protein; 1.60A {Rattus norvegicus} (B:)
Probab=2.69 E-value=4.9e+02 Score=11.25 Aligned_cols=8 Identities=75% Similarity=1.261 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 64422254
Q gi|254780447|r 11 NVLWEGWL 18 (47)
Q Consensus 11 nvlwegwl 18 (47)
|||-|.|+
T Consensus 33 nVLrEtWl 40 (101)
T 1g4y_B 33 NVLRETWL 40 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99998898
Done!