RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780447|ref|YP_003064860.1| hypothetical protein
CLIBASIA_01660 [Candidatus Liberibacter asiaticus str. psy62]
         (47 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.1 bits (65), Expect = 0.22
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 28/72 (38%)

Query: 4  HASLMHVNVLWEGWL-SIGVTTD-------------LLSKF-----------AAGSFLFI 38
           AS    + L E +   +   T+             L+ KF             G F  +
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83

Query: 39 L--LLRAF-SDF 47
          L   L  F + +
Sbjct: 84 LNLCLTEFENCY 95


>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
           transduction, transducer, transcription factor; HET:
           PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
           b.2.5.5 d.93.1.1 PDB: 1uus_A*
          Length = 473

 Score = 24.5 bits (53), Expect = 6.0
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 10/44 (22%)

Query: 8   MHVNVLW-----EGWLSIGVTTDLLSKFAAGSFLFILLLRAFSD 46
            H++ LW      G++      D L     G+F    ++R FS+
Sbjct: 343 RHISTLWQEGIIYGYMGRQEVNDALQNQDPGTF----IIR-FSE 381


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.334    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 364,523
Number of extensions: 9257
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 47
Length of database: 5,693,230
Length adjustment: 20
Effective length of query: 27
Effective length of database: 5,208,350
Effective search space: 140625450
Effective search space used: 140625450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.4 bits)