Query gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 311
No_of_seqs 5 out of 7
Neff 2.1
Searched_HMMs 33803
Date Wed Jun 1 13:01:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780448.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1r71_A Transcriptional repres 33.5 31 0.00093 15.0 2.5 46 200-245 16-61 (102)
2 >2cr7_A Paired amphipathic hel 29.0 37 0.0011 14.5 3.9 54 194-247 6-67 (80)
3 >1f1s_A Hyaluronate lyase; the 23.7 46 0.0014 13.9 2.6 51 242-292 17-74 (78)
4 >2qjx_A Protein BIM1; calponin 23.3 47 0.0014 13.9 2.1 72 93-171 1-72 (127)
5 >2gag_A Heterotetrameric sarco 20.6 35 0.001 14.7 0.8 29 183-211 5-33 (100)
6 >1y56_A Hypothetical protein P 20.5 42 0.0012 14.2 1.2 25 187-211 16-40 (95)
7 >1z6m_A Conserved hypothetical 19.7 56 0.0017 13.4 2.7 27 184-210 148-174 (175)
8 >3dan_A Cytochrome P450 74A2; 19.5 42 0.0012 14.2 1.0 16 13-28 12-27 (154)
9 >1dgj_A Aldehyde oxidoreductas 18.5 42 0.0012 14.2 0.8 26 188-213 5-32 (77)
10 >1rm6_C 4-hydroxybenzoyl-COA r 18.1 53 0.0016 13.5 1.3 26 188-213 6-33 (77)
No 1
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:77-178)
Probab=33.50 E-value=31 Score=15.05 Aligned_cols=46 Identities=20% Similarity=0.062 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCH
Q ss_conf 8899999999751269746555665407466545899998837231
Q gi|254780448|r 200 SAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLLNLANK 245 (311)
Q Consensus 200 sa~~mL~dfkt~vPkd~e~~QLISSYAhQ~If~qs~~~L~s~hPe~ 245 (311)
+..++|++|++.|-|+++.++-.--.+-|+|-+-++-.|.-.+-+.
T Consensus 16 ~d~~~lneL~~l~kk~PeeV~aw~~d~~qEITR~sVk~lre~L~~k 61 (102)
T 1r71_A 16 RDVTVVNELVTAFKKRPEEVEAWLDDDTQEITRGTVKLLREFLDEK 61 (102)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHCTTCCCSHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6799999998613405999999999871046799999999883213
No 2
>>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A (A:)
Probab=29.04 E-value=37 Score=14.54 Aligned_cols=54 Identities=9% Similarity=0.225 Sum_probs=38.0
Q ss_pred CEECCCCHHHHHHHHHHHCCCCHH----HHHHHHHHCCHHH----HHHHHHHHHHHCCCHHC
Q ss_conf 132236889999999975126974----6555665407466----54589999883723100
Q gi|254780448|r 194 KKINIDSAQNMLAELNKIFPKDFE----KVQLISSYAHEHI----FCKPFTKDLLNLANKNI 247 (311)
Q Consensus 194 KKIs~Dsa~~mL~dfkt~vPkd~e----~~QLISSYAhQ~I----f~qs~~~L~s~hPe~~k 247 (311)
.+...+.+-.-++..|..|--+++ ++.+.+.|.++.+ +..-+..|+..||++..
T Consensus 6 ~~~t~~~A~~yl~kVK~~f~~~p~~Y~~FL~il~~~~~~~i~~~~v~~~v~~Ll~~hpdLl~ 67 (80)
T 2cr7_A 6 SGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIV 67 (80)
T ss_dssp CCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 88767999999999999981698999999999999987689899999999999766889999
No 3
>>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} (A:1-78)
Probab=23.74 E-value=46 Score=13.91 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=38.4
Q ss_pred CCCHHCCCCCCCCEEEEEE-----EECCCEEEEEEEECCEEEEC--CCCCHHHCCEEE
Q ss_conf 7231002116872379998-----53576599999602101222--660342135068
Q gi|254780448|r 242 LANKNIYQLSNPRYSYQFN-----TLKDKTISFVAKEEGLVTYL--NGSLHRNYGIKA 292 (311)
Q Consensus 242 hPe~~kyq~sns~ysY~in-----eL~dg~vkftAt~~t~vq~s--D~n~i~~yGika 292 (311)
+|-=-+|-...+-|.|++- .+++|++.=.+.-.|.|.++ ||+.+.+.-+.+
T Consensus 17 l~l~K~yv~~~~dY~Y~i~n~sia~venG~i~Plk~G~T~v~V~dk~Gk~i~~ipL~V 74 (78)
T 1f1s_A 17 TALNKNYVFNKADYQYTLTNPSLGKIVGGILYPNATGSTTVKISDKSGKIIKEVPLSV 74 (78)
T ss_dssp EETTSCEECSSTTSEEEESSGGGEEEETTEEEECSCEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCCCCEEEECCCCEEEEECCCCEEEEECCEEEECCCCEEEEEEECCCCCEEEEEEEEE
T ss_conf 3447656632674279973875067755378613688079999847996899997686
No 4
>>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} (A:)
Probab=23.34 E-value=47 Score=13.86 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=48.9
Q ss_pred CCEEEECCCCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHCCCHHHHHHHHH
Q ss_conf 7125410122326543102452011110540121111011000234456777654088667434301180023234442
Q gi|254780448|r 93 GSTAIKSESVGAKELISASQNSQTVTQTGNISDATKASSTIKDAQSIDRSQAIFQKMPLEEYPRLQKIGINYFRDFKLL 171 (311)
Q Consensus 93 ~s~~ikses~g~k~~is~~~~~~~~t~~g~~~~~tkas~tik~~~~i~~~~ai~~k~p~~e~~~~~~~~~~~frdf~Ll 171 (311)
+||..++..+|-+|++.=-|..-. + +.||-...-..+++.---.+|+..+|+...+.-+.....+.+.|+||
T Consensus 1 ~st~~~~~~~sR~eLL~WiN~~L~-~------~~~kiEel~tGaaYCQl~d~i~p~i~l~kVkf~a~~e~e~~~N~klL 72 (127)
T 2qjx_A 1 GSHXSAGIGESRTELLTWLNGLLN-L------NYKKIEECGTGAAYCQIXDSIYGDLPXNRVKFNATAEYEFQTNYKIL 72 (127)
T ss_dssp ----------CHHHHHHHHHHHHT-C------CCCSGGGGGGSHHHHHHHHHHHCCSCGGGSCTTCCSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC-C------CHHHHHHHCCCHHHHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHH
T ss_conf 986533444379999999999866-7------71549870562799999864555765343032578679999999999
No 5
>>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:15-114)
Probab=20.59 E-value=35 Score=14.71 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.9
Q ss_pred HHCCCEEEECCCEECCCCHHHHHHHHHHH
Q ss_conf 30576799838132236889999999975
Q gi|254780448|r 183 ASRATEFIIDGKKINIDSAQNMLAELNKI 211 (311)
Q Consensus 183 ~~ra~~FiiNGKKIs~Dsa~~mL~dfkt~ 211 (311)
...--+|.|||+++..+.-.++|+.+...
T Consensus 5 ~~~~i~i~idG~~~~~~~g~til~a~~~~ 33 (100)
T 2gag_A 5 REEALSLTVDGAKLSAFRGDTVASALLAN 33 (100)
T ss_dssp EEEEEEEEETTEEEEEEETCBHHHHHHHT
T ss_pred CCCEEEEEECCEEEEEECCCHHHHHHHHC
T ss_conf 89877999999995510888999999987
No 6
>>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3} (A:1-95)
Probab=20.51 E-value=42 Score=14.20 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=20.8
Q ss_pred CEEEECCCEECCCCHHHHHHHHHHH
Q ss_conf 6799838132236889999999975
Q gi|254780448|r 187 TEFIIDGKKINIDSAQNMLAELNKI 211 (311)
Q Consensus 187 ~~FiiNGKKIs~Dsa~~mL~dfkt~ 211 (311)
-+|+|||+.+....-.+.|+.+..+
T Consensus 16 v~i~idG~~~~~~~g~til~al~~~ 40 (95)
T 1y56_A 16 VTIYFEGKELEAYEGEKLPVALLAN 40 (95)
T ss_dssp EEEEETTEEEEEETTCBHHHHHHHT
T ss_pred EEEEECCEEEECCCCCHHHHHHHHC
T ss_conf 8999999990214899999999977
No 7
>>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis V583} (A:)
Probab=19.72 E-value=56 Score=13.38 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=20.5
Q ss_pred HCCCEEEECCCEECCCCHHHHHHHHHH
Q ss_conf 057679983813223688999999997
Q gi|254780448|r 184 SRATEFIIDGKKINIDSAQNMLAELNK 210 (311)
Q Consensus 184 ~ra~~FiiNGKKIs~Dsa~~mL~dfkt 210 (311)
.-.-+|+|||+.+.-..+.+.|.++.+
T Consensus 148 ~gtPt~iing~~i~g~~~~~~~~~~i~ 174 (175)
T 1z6m_A 148 QFVPTIIIGEYIFDESVTEEELRGYIE 174 (175)
T ss_dssp CSSCEEEETTEEECTTCCHHHHHHHHT
T ss_pred CCCCEEEECCEECCCCCCHHHHHHHHC
T ss_conf 648889899998469899999999974
No 8
>>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A* (A:1-95,A:344-402)
Probab=19.45 E-value=42 Score=14.22 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.0
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 6774420466640024
Q gi|254780448|r 13 KGNYGWGALGIVSDVA 28 (311)
Q Consensus 13 kgnygwg~~g~~sd~a 28 (311)
-|.|||-.+|.+.|--
T Consensus 12 pg~yg~p~~~~~~dr~ 27 (154)
T 3dan_A 12 PGSYGIPFFQPIKDRL 27 (154)
T ss_dssp CCCCCSTTHHHHHHHH
T ss_pred CCCCCCCEEECHHHHH
T ss_conf 9899999774244799
No 9
>>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} (A:1-77)
Probab=18.51 E-value=42 Score=14.19 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=17.4
Q ss_pred EEEECCCEEC--CCCHHHHHHHHHHHCC
Q ss_conf 7998381322--3688999999997512
Q gi|254780448|r 188 EFIIDGKKIN--IDSAQNMLAELNKIFP 213 (311)
Q Consensus 188 ~FiiNGKKIs--~Dsa~~mL~dfkt~vP 213 (311)
+|.+||+++. .+....+|+.++++-+
T Consensus 5 ~~~iNG~~~~v~v~~~~tll~~lr~~~~ 32 (77)
T 1dgj_A 5 TLIVNGMARRLLVSPNDLLVDVLRSQLQ 32 (77)
T ss_dssp ECEETTBCCEEEECTTCBHHHHHHHTTC
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
T ss_conf 9999798878805988819999986169
No 10
>>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} (C:1-77)
Probab=18.11 E-value=53 Score=13.52 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred EEEECCCE--ECCCCHHHHHHHHHHHCC
Q ss_conf 79983813--223688999999997512
Q gi|254780448|r 188 EFIIDGKK--INIDSAQNMLAELNKIFP 213 (311)
Q Consensus 188 ~FiiNGKK--Is~Dsa~~mL~dfkt~vP 213 (311)
+|.+||+. +..+.....|+.++++-+
T Consensus 6 ~~~inG~~~~v~~~~~~tll~~lr~~~~ 33 (77)
T 1rm6_C 6 RLTLNGRAREDLVPDNMLLLDYLRETVG 33 (77)
T ss_dssp EEEETTEEEEEEEETTCBHHHHHHHTTC
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
T ss_conf 9999999989767999999999962558
Done!