RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780448|ref|YP_003064861.1| hypothetical protein
CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62]
(311 letters)
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 31.0 bits (70), Expect = 0.45
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 38 GKVLFGLVRGSSIATKIATTGIATVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAI 97
G++L + +++ + IATV Q+A + ++ +E L +EG + E A
Sbjct: 390 GQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAA 449
Query: 98 KSE 100
+
Sbjct: 450 AHD 452
>gnl|CDD|102532 PRK06755, PRK06755, hypothetical protein; Validated.
Length = 209
Score = 30.0 bits (67), Expect = 0.88
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 246 NIYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNAP 301
+IY+ S+ Q T+ IS + EEG VT+ S+ R +G EGI P
Sbjct: 85 DIYKKSSAECILQVQTVDSHLISELYGEEGEVTFDKRSVERVFG--KEGITEMTIP 138
>gnl|CDD|180713 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1151
Score = 29.9 bits (68), Expect = 0.91
Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 150 PLEEYPR-LQKIGINYFRDFKLLGTNKVYKNLLDASRAT-EFIIDGKKINIDSAQNMLAE 207
PLEEY L+K D L D + II K M+A
Sbjct: 957 PLEEYEETLKKQTSATISDIISDEEEDGESKLKDGDKVIIGGIITEVKRKTTRNNEMMAF 1016
Query: 208 LNK----------IFPKDFEKVQ 220
L +FPK +EK +
Sbjct: 1017 LTLEDLYGTVEVIVFPKVYEKYR 1039
>gnl|CDD|180130 PRK05562, PRK05562, precorrin-2 dehydrogenase; Provisional.
Length = 223
Score = 28.1 bits (63), Expect = 2.8
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 229 HIFCKPFTKDLLNLANKNIYQLSNPRYSYQFNTLKDKTISFVAKEE 274
+I K F+K+ L+L +L Y +F +KDK + +A ++
Sbjct: 52 YILSKKFSKEFLDLKKYGNLKLIKGNYDKEF--IKDKHLIVIATDD 95
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 27.6 bits (62), Expect = 4.3
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 149 MPLEEYPRL-QKIGINYFRDFKLLGTNKVYKN 179
+ + P L ++IG+ F+DF+LL VY+N
Sbjct: 69 LRGRQLPLLRRRIGV-VFQDFRLLPDRTVYEN 99
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens.
Length = 455
Score = 27.3 bits (61), Expect = 5.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 161 GINYFRDFKLLGTNKVYKNLLDASRATEFIID 192
I+ +LLG + V +N LDA +FI++
Sbjct: 204 PIDREYLAELLGFDAVTENSLDAVSDRDFILE 235
>gnl|CDD|117618 pfam09052, SipA, Salmonella invasion protein A. Salmonella
invasion protein A is an actin-binding protein that
contributes to host cytoskeletal rearrangements by
stimulating actin polymerisation and counteracting
F-actin destabilising proteins. Members of this family
possess an all-helical fold consisting of eight
alpha-helices arranged so that six long, amphipathic
helices form a compact fold that surrounds a final,
predominantly hydrophobic helix in the middle of the
molecule.
Length = 674
Score = 27.3 bits (60), Expect = 5.6
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 47 GSSIATKIATTGIATVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKE 106
G+ I + G+ T QE + ++ G L + + + + GA+
Sbjct: 413 GAVRLAGIGSDGLTTSSQERSANNSLSRGGRPLNI----QNSSVTDPLHPVLTAADGAEG 468
Query: 107 LISASQNSQTVTQTGNISDATKASSTIKDAQSIDRS 142
+ S++ NS T++G A K + D
Sbjct: 469 VKSSTDNSSDTTKSGASLSHRVAGQINKFNSNTDSK 504
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 339
Score = 26.5 bits (59), Expect = 8.6
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 21/97 (21%)
Query: 210 KIFPKDFEKVQLISSYAHEHI-FCKPFTKDLLNLAN-------KNIYQLSNPRYSYQFNT 261
+ EK + +EHI F F ++ N + L++ ++S
Sbjct: 214 EFAGFKAEKYTFLDHLQNEHIAFK--F-GEIKLTPNVKFHKIGSDFELLTSDKFSELL-- 268
Query: 262 LKDKTISFVAKEEGLVTYLNG-----SLHRNYGIKAE 293
K I ++ K G++ +LN + ++YGI A+
Sbjct: 269 ---KAIEYLKKNGGVLIFLNTESKENNQVKDYGIGAQ 302
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase.
Length = 1050
Score = 26.3 bits (58), Expect = 9.4
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 53 KIATTGIATVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELIS 109
KI G TVV E M + GA L K EA I++ G + SE +E+ S
Sbjct: 664 KIHKNGSETVVGEEIGMYSSQGSGAYLFKPDGEAQPIVQAGGLVVVSEGPLVQEVHS 720
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,763,097
Number of extensions: 292680
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 29
Length of query: 311
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 218
Effective length of database: 3,984,929
Effective search space: 868714522
Effective search space used: 868714522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)