RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62] (311 letters) >1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} (A:311-791) Length = 481 Score = 30.7 bits (68), Expect = 0.25 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Query: 135 DAQSIDRSQAIF-QKMPLEEYPRLQKIGINY 164 D Q++++ F + E +L K G+ Y Sbjct: 450 DTQALEKDWLRFANILGQRELAKLDKGGVAY 480 >3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B* (A:) Length = 137 Score = 28.2 bits (62), Expect = 1.4 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 8/96 (8%) Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFP-KDF 216 K G+ F F L T +NL EF + + + + + Sbjct: 28 SKNGVAAFHAF--LKTEFSEENLEFWLACEEFKKIRSATKL---ASRAHHIFDEYIRSEA 82 Query: 217 EKVQLISSYAHEHI--FCKPFTKDLLNLANKNIYQL 250 K I E + T ++A L Sbjct: 83 PKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTL 118 >2acx_A G protein-coupled receptor kinase 6; GRK, GRK6, transferase; HET: ANP; 2.60A {Homo sapiens} (A:1-181) Length = 181 Score = 28.1 bits (62), Expect = 1.6 Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 10/98 (10%) Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIF--PKD 215 IG FR+F T + + D + L + F Sbjct: 60 NPIGRLLFREF--CATRPELSRCVAFLDGVAEY---EVTPDDKRKACGRNLTQNFLSHTG 114 Query: 216 FEKVQLISSYAHEHIFC---KPFTKDLLNLANKNIYQL 250 + + + + + KDL + ++ Sbjct: 115 PDLIPEVPRQLVTNCTQRLEQGPCKDLFQELTRLTHEY 152 >3hol_A TBPB; transferrin receptor, iron acquisition, vaccine, lipoprotein, transport protein; 1.98A {Actinobacillus pleuropneumoniae} PDB: 3hoe_A (A:1-18,A:269-509) Length = 259 Score = 27.7 bits (59), Expect = 2.2 Identities = 12/32 (37%), Positives = 16/32 (50%) Query: 169 KLLGTNKVYKNLLDASRATEFIIDGKKINIDS 200 K+ TN L + A+ IIDGKKI + Sbjct: 30 KIDLTNFSISELNNFGDASVLIIDGKKIKLAG 61 >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} (A:151-319) Length = 169 Score = 26.6 bits (59), Expect = 4.3 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 144 AIFQKMPLEEYPRLQKIGINY----FRDFKLLGTNKVYKNLLDASRATEFIIDGKKINID 199 AIFQ P +++I I FR L A + + G KI+ID Sbjct: 5 AIFQCFPHHNRDYVRRIIITASGGPFRTTSL--AEMATVTPERAVQHPNWS-MGAKISID 61 Query: 200 SAQNM-----LAELNKIFPKDFEKVQLI---SSYAH 227 SA M L E +F EK +++ S H Sbjct: 62 SATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIH 97 >3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA processing, nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} (A:301-651,A:856-899) Length = 395 Score = 26.4 bits (57), Expect = 4.8 Identities = 5/46 (10%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 175 KVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQ 220 ++++ L ++ +N+ A+ +L+ + F++++ Sbjct: 59 EIWRASL--PHXGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRLK 102 >2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis, metal-binding; 1.9A {Mycobacterium tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A* (A:152-320) Length = 169 Score = 25.9 bits (57), Expect = 6.9 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 15/96 (15%) Query: 144 AIFQKMPLEEYPRLQKIGINY----FRDFKLLGTNKVYKNLLDASRATEFIIDGKKINID 199 A+ Q + + K+ + FR + V A + G ++ Sbjct: 5 ALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADLEHV--TPEQAGAHPTWS-MGPMNTLN 61 Query: 200 SAQNM-----LAELNKIFPKDFEKVQLI---SSYAH 227 SA + + E + +F ++++ ++ S H Sbjct: 62 SASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIH 97 >2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens} (A:) Length = 127 Score = 25.8 bits (56), Expect = 8.0 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 6/95 (6%) Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFE 217 K G+ F+ F L T +NL +F + + S + + Sbjct: 17 HKYGLAVFQAF--LRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFA--EYIAIQAC 72 Query: 218 KVQLISSYAHEHI--FCKPFTKDLLNLANKNIYQL 250 K + SY EH + T+ +LA K I+ L Sbjct: 73 KEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGL 107 >2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:29-108) Length = 80 Score = 25.4 bits (55), Expect = 9.2 Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 4/51 (7%) Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATE----FIIDGKKINIDSAQNM 204 + + Y+ A A E ++ G+ I + N+ Sbjct: 30 IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 80 >2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin/immune system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:420-873) Length = 454 Score = 25.5 bits (56), Expect = 9.8 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 12/83 (14%) Query: 157 LQKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIF--PK 214 L I Y + LL ++I D + I + ++N Sbjct: 376 LMNSMIPYGVKRLEDFDASLKDALL------KYIYDNRGTLIGQVDRLKDKVNNTLSTDI 429 Query: 215 DFEKVQLISSYAHEHIFCKPFTK 237 F+ +S Y FT+ Sbjct: 430 PFQ----LSKYVDNQRLLSTFTE 448 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.315 0.131 0.362 Gapped Lambda K H 0.267 0.0327 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,087,702 Number of extensions: 85032 Number of successful extensions: 228 Number of sequences better than 10.0: 1 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 24 Length of query: 311 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 223 Effective length of database: 1,981,209 Effective search space: 441809607 Effective search space used: 441809607 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 54 (25.7 bits)