RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780448|ref|YP_003064861.1| hypothetical protein
CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62]
         (311 letters)



>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase,
           chitinolysis, A/B(TIM)-barrel, site directed
           mutagenesis; HET: CBS; 1.80A {Serratia marcescens}
           (A:311-791)
          Length = 481

 Score = 30.7 bits (68), Expect = 0.25
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 135 DAQSIDRSQAIF-QKMPLEEYPRLQKIGINY 164
           D Q++++    F   +   E  +L K G+ Y
Sbjct: 450 DTQALEKDWLRFANILGQRELAKLDKGGVAY 480


>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase
           activating protein, heterotrimeric G-protein,
           lipoprotein, palmitate, phosphoprotein; 1.89A {Mus
           musculus} PDB: 3c7k_B* 2ik8_B* (A:)
          Length = 137

 Score = 28.2 bits (62), Expect = 1.4
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 8/96 (8%)

Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFP-KDF 216
            K G+  F  F  L T    +NL       EF        +    +    +   +   + 
Sbjct: 28  SKNGVAAFHAF--LKTEFSEENLEFWLACEEFKKIRSATKL---ASRAHHIFDEYIRSEA 82

Query: 217 EKVQLISSYAHEHI--FCKPFTKDLLNLANKNIYQL 250
            K   I     E      +  T    ++A      L
Sbjct: 83  PKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTL 118


>2acx_A G protein-coupled receptor kinase 6; GRK, GRK6, transferase;
           HET: ANP; 2.60A {Homo sapiens} (A:1-181)
          Length = 181

 Score = 28.1 bits (62), Expect = 1.6
 Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 10/98 (10%)

Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIF--PKD 215
             IG   FR+F    T       +            +    D  +     L + F     
Sbjct: 60  NPIGRLLFREF--CATRPELSRCVAFLDGVAEY---EVTPDDKRKACGRNLTQNFLSHTG 114

Query: 216 FEKVQLISSYAHEHIFC---KPFTKDLLNLANKNIYQL 250
            + +  +      +      +   KDL     +  ++ 
Sbjct: 115 PDLIPEVPRQLVTNCTQRLEQGPCKDLFQELTRLTHEY 152


>3hol_A TBPB; transferrin receptor, iron acquisition, vaccine,
           lipoprotein, transport protein; 1.98A {Actinobacillus
           pleuropneumoniae} PDB: 3hoe_A (A:1-18,A:269-509)
          Length = 259

 Score = 27.7 bits (59), Expect = 2.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 169 KLLGTNKVYKNLLDASRATEFIIDGKKINIDS 200
           K+  TN     L +   A+  IIDGKKI +  
Sbjct: 30  KIDLTNFSISELNNFGDASVLIIDGKKIKLAG 61


>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH
           dependent, fosmidomycin, non- mevalonate pathway,
           oxidoreductase; 1.91A {Zymomonas mobilis} (A:151-319)
          Length = 169

 Score = 26.6 bits (59), Expect = 4.3
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 144 AIFQKMPLEEYPRLQKIGINY----FRDFKLLGTNKVYKNLLDASRATEFIIDGKKINID 199
           AIFQ  P      +++I I      FR   L            A +   +   G KI+ID
Sbjct: 5   AIFQCFPHHNRDYVRRIIITASGGPFRTTSL--AEMATVTPERAVQHPNWS-MGAKISID 61

Query: 200 SAQNM-----LAELNKIFPKDFEKVQLI---SSYAH 227
           SA  M     L E   +F    EK +++    S  H
Sbjct: 62  SATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIH 97


>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein
           complex, exonuclease, hydrolase, mRNA processing,
           nuclease, nucleus, rRNA processing, transcription; 2.20A
           {Schizosaccharomyces pombe} (A:301-651,A:856-899)
          Length = 395

 Score = 26.4 bits (57), Expect = 4.8
 Identities = 5/46 (10%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 175 KVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQ 220
           ++++  L       ++     +N+  A+ +L+ +       F++++
Sbjct: 59  EIWRASL--PHXGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRLK 102


>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C,
           DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis,
           metal-binding; 1.9A {Mycobacterium tuberculosis} PDB:
           2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A*
           (A:152-320)
          Length = 169

 Score = 25.9 bits (57), Expect = 6.9
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 144 AIFQKMPLEEYPRLQKIGINY----FRDFKLLGTNKVYKNLLDASRATEFIIDGKKINID 199
           A+ Q +       + K+ +      FR +       V      A     +   G    ++
Sbjct: 5   ALAQCLRGGTPDEVAKLVLTASGGPFRGWSAADLEHV--TPEQAGAHPTWS-MGPMNTLN 61

Query: 200 SAQNM-----LAELNKIFPKDFEKVQLI---SSYAH 227
           SA  +     + E + +F   ++++ ++    S  H
Sbjct: 62  SASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIH 97


>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain,
           signaling protein inhibitor; 2.30A {Homo sapiens} (A:)
          Length = 127

 Score = 25.8 bits (56), Expect = 8.0
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFE 217
            K G+  F+ F  L T    +NL       +F     +  + S    +    +       
Sbjct: 17  HKYGLAVFQAF--LRTEFSEENLEFWLACEDFKKVKSQSKMASKAKKIFA--EYIAIQAC 72

Query: 218 KVQLISSYAHEHI--FCKPFTKDLLNLANKNIYQL 250
           K   + SY  EH     +  T+   +LA K I+ L
Sbjct: 73  KEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGL 107


>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA;
           2.10A {Homo sapiens} (A:29-108)
          Length = 80

 Score = 25.4 bits (55), Expect = 9.2
 Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 4/51 (7%)

Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATE----FIIDGKKINIDSAQNM 204
             +  +             Y+    A  A E     ++ G+ I +    N+
Sbjct: 30  IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 80


>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein
           antibody complex, toxin/immune system complex; 2.61A
           {Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:420-873)
          Length = 454

 Score = 25.5 bits (56), Expect = 9.8
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 12/83 (14%)

Query: 157 LQKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIF--PK 214
           L    I Y           +   LL      ++I D +   I     +  ++N       
Sbjct: 376 LMNSMIPYGVKRLEDFDASLKDALL------KYIYDNRGTLIGQVDRLKDKVNNTLSTDI 429

Query: 215 DFEKVQLISSYAHEHIFCKPFTK 237
            F+    +S Y         FT+
Sbjct: 430 PFQ----LSKYVDNQRLLSTFTE 448


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0327    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,087,702
Number of extensions: 85032
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 24
Length of query: 311
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 223
Effective length of database: 1,981,209
Effective search space: 441809607
Effective search space used: 441809607
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.7 bits)