RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780448|ref|YP_003064861.1| hypothetical protein
CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62]
(311 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 37.6 bits (87), Expect = 0.004
Identities = 33/214 (15%), Positives = 65/214 (30%), Gaps = 83/214 (38%)
Query: 153 EYPRLQKIGINYF-RDFKLLGTNKVY---KNLLDASRATE----FII---------DGKK 195
++ ++ + + F + L N ++ LL + T +I +
Sbjct: 79 QFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 196 IN-------IDSAQNMLAELNKIF-----PKD-FEKVQ-LISSYAHEHIFCKPFTKDLLN 241
+ + A+L IF D FE+++ L +Y DL+
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-------HVLVGDLIK 189
Query: 242 LANKNIYQLS-NPR-----YSYQFNTLK-----DKT----------ISF--VAKEEGLVT 278
+ + + +L ++ N L+ T IS + G++
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI----GVI- 244
Query: 279 YLNGSL-HRNYGI--KAEGILSRNAPPEL--HFS 307
L H Y + K G P EL +
Sbjct: 245 ----QLAH--YVVTAKLLGF----TPGELRSYLK 268
Score = 33.4 bits (76), Expect = 0.061
Identities = 17/106 (16%), Positives = 27/106 (25%), Gaps = 60/106 (56%)
Query: 2 IPVYGT-----IQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIAT 56
IPVY T ++ G+ I +V I
Sbjct: 457 IPVYDTFDGSDLRVL-SGS-------ISER-----------------IVD--CIIRL--- 486
Query: 57 TGIATVVQ--EATVMTKTTQEGALLAKEGIEATHIME---GGSTAI 97
V+ T ATHI++ GG++ +
Sbjct: 487 -----PVKWETTTQFK---------------ATHILDFGPGGASGL 512
Score = 29.9 bits (67), Expect = 0.86
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 59/114 (51%)
Query: 202 QNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLLNLANKNIYQLSNPRYSYQFNT 261
Q+ + + N P + + ++L N +
Sbjct: 350 QDYVNKTNSHLPAG------------KQVE--------ISLVN-------GAK------- 375
Query: 262 LKDKTISFVAKEEGLVT------Y-LNGSLHRNYGIKAEGILSRNAPPELHFSS 308
+ V V+ Y LN +L + KA L ++ P FS
Sbjct: 376 ------NLV------VSGPPQSLYGLNLTLRK---AKAPSGLDQSRIP---FSE 411
Score = 28.4 bits (63), Expect = 2.1
Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 66/179 (36%)
Query: 1 MIPVYGTIQEFKKGNYGWGALGIVSDV----ALL------------AIPAAYLGKVLFGL 44
+IP T G Y AL ++DV +L+ A+P LG+ +G+
Sbjct: 1752 LIPADATFAGHSLGEYA--ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 45 VRGSSIATKIATTGIATVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGA 104
+ + V +QE AL +++ E VG
Sbjct: 1810 I----------------AINPGRVAASFSQE-AL--------QYVV---------ERVGK 1835
Query: 105 K-----ELISASQNSQTVTQTGNISDATKASSTIKDAQSIDRSQAI----FQK-MPLEE 153
+ E+++ + +Q G++ +A T+ + + + Q I QK + LEE
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDL----RALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled receptor kinase, GRK, GRK1, P-loop,
autophosphorylation, ADP, ATP-binding; HET: ADP; 1.84A
{Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A*
2i94_B
Length = 543
Score = 34.6 bits (79), Expect = 0.031
Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 27/179 (15%)
Query: 70 TKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQTGNISDATKA 129
T AL + IE + K++++ A L +Q + ++ A
Sbjct: 78 THEQHGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEPQAQLFCSFLDAETVARARAG 137
Query: 130 SSTIKDAQSIDRSQAIFQKMPLEEY--------------PRLQKIGINYFRDFKLLGT-- 173
+ + A + P +E+ Q +G ++F DF++LG
Sbjct: 138 AGDGLFQPLLRAVLAHLGQAPFQEFLDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGG 197
Query: 174 -NKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEK-VQLISSYAHEHI 230
+V+ + +AT + KK+N + + + ++++ I
Sbjct: 198 FGEVFACQM---KATGKLYACKKLNKKRLK------KRKGYQGAMVEKKILAKVHSRFI 247
>1o4w_A PIN (PILT N-terminus) domain; AF0591, structural genomics, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.90A {Archaeoglobus fulgidus}
SCOP: c.120.1.1
Length = 147
Score = 27.9 bits (62), Expect = 3.0
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 36/137 (26%)
Query: 171 LGTNKVYKNLLDASRATEFIIDG--KKINIDSA------------QNMLAELNKIFPKDF 216
NKV ++D T ++ K ++ ++ EL K+
Sbjct: 18 GRNNKVRCAVVD----TNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLR 73
Query: 217 EKVQLISSYA------HEHIFCKPFTKD-LLNLANKNIYQLSNPRYSYQFNTLKDKTISF 269
K ++ + +A E + + L+ A K L DK +
Sbjct: 74 GKEKVAARFALKLLEHFEVVETESEGDPSLIEAAEKYGCILITN----------DKELKR 123
Query: 270 VAKEEGL-VTYLNGSLH 285
AK+ G+ V YL
Sbjct: 124 KAKQRGIPVGYLKEDKR 140
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA processing, nuclease,
nucleus, rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 27.9 bits (61), Expect = 3.2
Identities = 8/95 (8%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 175 KVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKP 234
++++ L ++ +N+ A+ +L+ + F++++ +E+ +
Sbjct: 359 EIWRASL--PHMGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRLKQQEDRRNENYRRRQ 416
Query: 235 FTKDLLNLANKNIYQLSNPRYSYQFNTLKDKTISF 269
+ + + Q + + S
Sbjct: 417 QRESNQESESYVDNVVIQRSVETQSTEVVTSSKST 451
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 27.8 bits (61), Expect = 3.3
Identities = 13/142 (9%), Positives = 43/142 (30%), Gaps = 14/142 (9%)
Query: 92 GGSTAIKSESVGAKELISASQNSQTVTQTGNISDATKASSTIKDAQSIDRSQAIFQKMPL 151
+ S G + S + S ++ + + + + + Q +
Sbjct: 22 AAGILVPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALNPELVQAVQH 81
Query: 152 EEYPRLQKIGINYFRDFKLLGTN---KVYKNLLDASRATEFIIDGKKINIDSAQNMLAEL 208
I +++ ++G VY L + + K +N + +++
Sbjct: 82 VVIGPSSLI-VHFNE---VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQF 137
Query: 209 NKIFPKDFEKVQLISSYAHEHI 230
+ ++ ++H ++
Sbjct: 138 LT-------EGIIMKDFSHPNV 152
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent,
fosmidomycin, non- mevalonate pathway, oxidoreductase;
1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3
d.81.1.3 PDB: 1r0l_A*
Length = 388
Score = 27.6 bits (61), Expect = 3.5
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 10/105 (9%)
Query: 139 IDRSQ-AIFQKMPLEEYPRLQKIGINYFRD-FKLLGTNKVYKNLLDASRATEFIIDGKKI 196
+D AIFQ P +++I I F+ ++ + + G KI
Sbjct: 149 VDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKI 208
Query: 197 NIDSAQNM-----LAELNKIFPKDFEKVQLI---SSYAHEHIFCK 233
+IDSA M L E +F EK +++ S H +
Sbjct: 209 SIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYL 253
>2v62_A Serine/threonine-protein kinase VRK2; hypothetical protein,
alternative splicing, serine/threonine kinase,
transferase, ATP-binding, membrane; 1.7A {Homo sapiens}
Length = 345
Score = 27.4 bits (60), Expect = 3.8
Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 28/155 (18%)
Query: 146 FQKMPLEEYPRLQKIGINYFRDFKLLGT---NKVYKNLLDASRATEFIIDGKKINIDSAQ 202
FQ MP E L + N + K +G+ +Y ++ + + ++ +
Sbjct: 20 FQSMPFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYL-AFPTNKPEKDAR--HVVKVEYQE 76
Query: 203 NMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLLNLANKNIYQLSNPRYSYQFNTL 262
N F +++ A + + L I Y
Sbjct: 77 N---------GPLFSELKFYQRVAKKDCIK--KWIERKQLDYLGIPLF----YGSGLTEF 121
Query: 263 KDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILS 297
K ++ F+ E L L + G
Sbjct: 122 KGRSYRFMVME-----RLGIDLQKI--SGQNGTFK 149
>1e1h_A BONT/A LC, botulinum neurotoxin type A light chain;
Zn-endopeptidase, complex, substrate bound, inhibitor
bound, hydrolase; 1.80A {Clostridium botulinum} SCOP:
d.92.1.7
Length = 287
Score = 27.6 bits (61), Expect = 3.9
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 20/144 (13%)
Query: 168 FKLLGTNKVYKNLLDA-SRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKV---QLIS 223
F+ + + + + LL + R F G I+ + +N I P + L+
Sbjct: 132 FERIYSTDLGRMLLTSIVRGIPFW-GGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVI 190
Query: 224 SYAHEHIF---CKPFTKDLLNLANKNIYQLS----NPRYSYQFNTLKDKTISFVAKEEG- 275
I CK F D+LNL +P +++ F + + +
Sbjct: 191 IGPSADIIQFECKSFGHDVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKF 250
Query: 276 -------LVTYLNGSLHRNYGIKA 292
L L + HR YGI
Sbjct: 251 ATDPAVTLAHELIHAEHRLYGIAI 274
>2acx_A G protein-coupled receptor kinase 6; GRK, GRK6, transferase; HET:
ANP; 2.60A {Homo sapiens}
Length = 576
Score = 27.2 bits (60), Expect = 4.9
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 154 YPRLQKIGINYFRDFKLLGT---NKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNK 210
+ Q + N FR +++LG +V + RAT + KK+ + +
Sbjct: 175 WLERQPVTKNTFRQYRVLGKGGFGEVCACQV---RATGKMYACKKLEKKRIK------KR 225
Query: 211 IFPKDFEK-VQLISSYAHEHI 230
Q++ +
Sbjct: 226 KGEAMALNEKQILEKVNSRFV 246
>2kva_A Cation-independent mannose-6-phosphate receptor; transport,
lysosome, sugar binding, glyco membrane, phosphoprotein,
transmembrane, disulfide bond; NMR {Bos taurus} PDB:
2kvb_A
Length = 148
Score = 27.0 bits (59), Expect = 5.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 238 DLLNLANKNIYQLSNPRYSYQFN 260
DL L K+ Y++ +Y + N
Sbjct: 27 DLTPLTKKDAYKVETDKYEFHIN 49
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase;
HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1
c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 1k5h_A 1onn_A
1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3iie_A
Length = 406
Score = 26.8 bits (59), Expect = 6.4
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 193 GKKINIDSAQNM-----LAELNKIFPKDFEKVQLIS---SYAH 227
G+KI++DSA M E +F +++++ S H
Sbjct: 223 GRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIH 265
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody
complex, toxin/immune system complex; 2.61A {Clostridium
botulinum} PDB: 2nz9_A 3bta_A
Length = 1295
Score = 26.8 bits (59), Expect = 6.4
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 157 LQKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPK-- 214
L I Y + LL ++I D + I + ++N
Sbjct: 795 LMNSMIPYGVKRLEDFDASLKDALL------KYIYDNRGTLIGQVDRLKDKVNNTLSTDI 848
Query: 215 DFEKVQLISSYAHEHIFCKPFTKDLLNLANKNIYQLSN 252
F+ +S Y FT+ + N+ N +I L
Sbjct: 849 PFQ----LSKYVDNQRLLSTFTEYIKNIINTSILNLRY 882
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,408,757
Number of extensions: 103718
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 24
Length of query: 311
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 219
Effective length of database: 3,462,782
Effective search space: 758349258
Effective search space used: 758349258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)