RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62] (311 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 37.6 bits (87), Expect = 0.004 Identities = 33/214 (15%), Positives = 65/214 (30%), Gaps = 83/214 (38%) Query: 153 EYPRLQKIGINYF-RDFKLLGTNKVY---KNLLDASRATE----FII---------DGKK 195 ++ ++ + + F + L N ++ LL + T +I + Sbjct: 79 QFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136 Query: 196 IN-------IDSAQNMLAELNKIF-----PKD-FEKVQ-LISSYAHEHIFCKPFTKDLLN 241 + + A+L IF D FE+++ L +Y DL+ Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-------HVLVGDLIK 189 Query: 242 LANKNIYQLS-NPR-----YSYQFNTLK-----DKT----------ISF--VAKEEGLVT 278 + + + +L ++ N L+ T IS + G++ Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI----GVI- 244 Query: 279 YLNGSL-HRNYGI--KAEGILSRNAPPEL--HFS 307 L H Y + K G P EL + Sbjct: 245 ----QLAH--YVVTAKLLGF----TPGELRSYLK 268 Score = 33.4 bits (76), Expect = 0.061 Identities = 17/106 (16%), Positives = 27/106 (25%), Gaps = 60/106 (56%) Query: 2 IPVYGT-----IQEFKKGNYGWGALGIVSDVALLAIPAAYLGKVLFGLVRGSSIATKIAT 56 IPVY T ++ G+ I +V I Sbjct: 457 IPVYDTFDGSDLRVL-SGS-------ISER-----------------IVD--CIIRL--- 486 Query: 57 TGIATVVQ--EATVMTKTTQEGALLAKEGIEATHIME---GGSTAI 97 V+ T ATHI++ GG++ + Sbjct: 487 -----PVKWETTTQFK---------------ATHILDFGPGGASGL 512 Score = 29.9 bits (67), Expect = 0.86 Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 59/114 (51%) Query: 202 QNMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLLNLANKNIYQLSNPRYSYQFNT 261 Q+ + + N P + + ++L N + Sbjct: 350 QDYVNKTNSHLPAG------------KQVE--------ISLVN-------GAK------- 375 Query: 262 LKDKTISFVAKEEGLVT------Y-LNGSLHRNYGIKAEGILSRNAPPELHFSS 308 + V V+ Y LN +L + KA L ++ P FS Sbjct: 376 ------NLV------VSGPPQSLYGLNLTLRK---AKAPSGLDQSRIP---FSE 411 Score = 28.4 bits (63), Expect = 2.1 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 66/179 (36%) Query: 1 MIPVYGTIQEFKKGNYGWGALGIVSDV----ALL------------AIPAAYLGKVLFGL 44 +IP T G Y AL ++DV +L+ A+P LG+ +G+ Sbjct: 1752 LIPADATFAGHSLGEYA--ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809 Query: 45 VRGSSIATKIATTGIATVVQEATVMTKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGA 104 + + V +QE AL +++ E VG Sbjct: 1810 I----------------AINPGRVAASFSQE-AL--------QYVV---------ERVGK 1835 Query: 105 K-----ELISASQNSQTVTQTGNISDATKASSTIKDAQSIDRSQAI----FQK-MPLEE 153 + E+++ + +Q G++ +A T+ + + + Q I QK + LEE Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDL----RALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890 >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled receptor kinase, GRK, GRK1, P-loop, autophosphorylation, ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 2i94_B Length = 543 Score = 34.6 bits (79), Expect = 0.031 Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 27/179 (15%) Query: 70 TKTTQEGALLAKEGIEATHIMEGGSTAIKSESVGAKELISASQNSQTVTQTGNISDATKA 129 T AL + IE + K++++ A L +Q + ++ A Sbjct: 78 THEQHGPALQLWKDIEDYDTADDALRPQKAQALRAAYLEPQAQLFCSFLDAETVARARAG 137 Query: 130 SSTIKDAQSIDRSQAIFQKMPLEEY--------------PRLQKIGINYFRDFKLLGT-- 173 + + A + P +E+ Q +G ++F DF++LG Sbjct: 138 AGDGLFQPLLRAVLAHLGQAPFQEFLDSLYFLRFLQWKWLEAQPMGEDWFLDFRVLGRGG 197 Query: 174 -NKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEK-VQLISSYAHEHI 230 +V+ + +AT + KK+N + + + ++++ I Sbjct: 198 FGEVFACQM---KATGKLYACKKLNKKRLK------KRKGYQGAMVEKKILAKVHSRFI 247 >1o4w_A PIN (PILT N-terminus) domain; AF0591, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1 Length = 147 Score = 27.9 bits (62), Expect = 3.0 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 36/137 (26%) Query: 171 LGTNKVYKNLLDASRATEFIIDG--KKINIDSA------------QNMLAELNKIFPKDF 216 NKV ++D T ++ K ++ ++ EL K+ Sbjct: 18 GRNNKVRCAVVD----TNVLMYVYLNKADVVGQLREFGFSRFLITASVKRELEKLEMSLR 73 Query: 217 EKVQLISSYA------HEHIFCKPFTKD-LLNLANKNIYQLSNPRYSYQFNTLKDKTISF 269 K ++ + +A E + + L+ A K L DK + Sbjct: 74 GKEKVAARFALKLLEHFEVVETESEGDPSLIEAAEKYGCILITN----------DKELKR 123 Query: 270 VAKEEGL-VTYLNGSLH 285 AK+ G+ V YL Sbjct: 124 KAKQRGIPVGYLKEDKR 140 >3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA processing, nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Length = 899 Score = 27.9 bits (61), Expect = 3.2 Identities = 8/95 (8%), Positives = 32/95 (33%), Gaps = 2/95 (2%) Query: 175 KVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIFCKP 234 ++++ L ++ +N+ A+ +L+ + F++++ +E+ + Sbjct: 359 EIWRASL--PHMGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRLKQQEDRRNENYRRRQ 416 Query: 235 FTKDLLNLANKNIYQLSNPRYSYQFNTLKDKTISF 269 + + + Q + + S Sbjct: 417 QRESNQESESYVDNVVIQRSVETQSTEVVTSSKST 451 >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373 Score = 27.8 bits (61), Expect = 3.3 Identities = 13/142 (9%), Positives = 43/142 (30%), Gaps = 14/142 (9%) Query: 92 GGSTAIKSESVGAKELISASQNSQTVTQTGNISDATKASSTIKDAQSIDRSQAIFQKMPL 151 + S G + S + S ++ + + + + + Q + Sbjct: 22 AAGILVPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALNPELVQAVQH 81 Query: 152 EEYPRLQKIGINYFRDFKLLGTN---KVYKNLLDASRATEFIIDGKKINIDSAQNMLAEL 208 I +++ ++G VY L + + K +N + +++ Sbjct: 82 VVIGPSSLI-VHFNE---VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQF 137 Query: 209 NKIFPKDFEKVQLISSYAHEHI 230 + ++ ++H ++ Sbjct: 138 LT-------EGIIMKDFSHPNV 152 >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* Length = 388 Score = 27.6 bits (61), Expect = 3.5 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 10/105 (9%) Query: 139 IDRSQ-AIFQKMPLEEYPRLQKIGINYFRD-FKLLGTNKVYKNLLDASRATEFIIDGKKI 196 +D AIFQ P +++I I F+ ++ + + G KI Sbjct: 149 VDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKI 208 Query: 197 NIDSAQNM-----LAELNKIFPKDFEKVQLI---SSYAHEHIFCK 233 +IDSA M L E +F EK +++ S H + Sbjct: 209 SIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYL 253 >2v62_A Serine/threonine-protein kinase VRK2; hypothetical protein, alternative splicing, serine/threonine kinase, transferase, ATP-binding, membrane; 1.7A {Homo sapiens} Length = 345 Score = 27.4 bits (60), Expect = 3.8 Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 28/155 (18%) Query: 146 FQKMPLEEYPRLQKIGINYFRDFKLLGT---NKVYKNLLDASRATEFIIDGKKINIDSAQ 202 FQ MP E L + N + K +G+ +Y ++ + + ++ + Sbjct: 20 FQSMPFPEGKVLDDMEGNQWVLGKKIGSGGFGLIYL-AFPTNKPEKDAR--HVVKVEYQE 76 Query: 203 NMLAELNKIFPKDFEKVQLISSYAHEHIFCKPFTKDLLNLANKNIYQLSNPRYSYQFNTL 262 N F +++ A + + L I Y Sbjct: 77 N---------GPLFSELKFYQRVAKKDCIK--KWIERKQLDYLGIPLF----YGSGLTEF 121 Query: 263 KDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILS 297 K ++ F+ E L L + G Sbjct: 122 KGRSYRFMVME-----RLGIDLQKI--SGQNGTFK 149 >1e1h_A BONT/A LC, botulinum neurotoxin type A light chain; Zn-endopeptidase, complex, substrate bound, inhibitor bound, hydrolase; 1.80A {Clostridium botulinum} SCOP: d.92.1.7 Length = 287 Score = 27.6 bits (61), Expect = 3.9 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 20/144 (13%) Query: 168 FKLLGTNKVYKNLLDA-SRATEFIIDGKKINIDSAQNMLAELNKIFPKDFEKV---QLIS 223 F+ + + + + LL + R F G I+ + +N I P + L+ Sbjct: 132 FERIYSTDLGRMLLTSIVRGIPFW-GGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVI 190 Query: 224 SYAHEHIF---CKPFTKDLLNLANKNIYQLS----NPRYSYQFNTLKDKTISFVAKEEG- 275 I CK F D+LNL +P +++ F + + + Sbjct: 191 IGPSADIIQFECKSFGHDVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKF 250 Query: 276 -------LVTYLNGSLHRNYGIKA 292 L L + HR YGI Sbjct: 251 ATDPAVTLAHELIHAEHRLYGIAI 274 >2acx_A G protein-coupled receptor kinase 6; GRK, GRK6, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 576 Score = 27.2 bits (60), Expect = 4.9 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 13/81 (16%) Query: 154 YPRLQKIGINYFRDFKLLGT---NKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNK 210 + Q + N FR +++LG +V + RAT + KK+ + + Sbjct: 175 WLERQPVTKNTFRQYRVLGKGGFGEVCACQV---RATGKMYACKKLEKKRIK------KR 225 Query: 211 IFPKDFEK-VQLISSYAHEHI 230 Q++ + Sbjct: 226 KGEAMALNEKQILEKVNSRFV 246 >2kva_A Cation-independent mannose-6-phosphate receptor; transport, lysosome, sugar binding, glyco membrane, phosphoprotein, transmembrane, disulfide bond; NMR {Bos taurus} PDB: 2kvb_A Length = 148 Score = 27.0 bits (59), Expect = 5.4 Identities = 7/23 (30%), Positives = 12/23 (52%) Query: 238 DLLNLANKNIYQLSNPRYSYQFN 260 DL L K+ Y++ +Y + N Sbjct: 27 DLTPLTKKDAYKVETDKYEFHIN 49 >1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3iie_A Length = 406 Score = 26.8 bits (59), Expect = 6.4 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 8/43 (18%) Query: 193 GKKINIDSAQNM-----LAELNKIFPKDFEKVQLIS---SYAH 227 G+KI++DSA M E +F +++++ S H Sbjct: 223 GRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIH 265 >2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin/immune system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A Length = 1295 Score = 26.8 bits (59), Expect = 6.4 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 12/98 (12%) Query: 157 LQKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAELNKIFPK-- 214 L I Y + LL ++I D + I + ++N Sbjct: 795 LMNSMIPYGVKRLEDFDASLKDALL------KYIYDNRGTLIGQVDRLKDKVNNTLSTDI 848 Query: 215 DFEKVQLISSYAHEHIFCKPFTKDLLNLANKNIYQLSN 252 F+ +S Y FT+ + N+ N +I L Sbjct: 849 PFQ----LSKYVDNQRLLSTFTEYIKNIINTSILNLRY 882 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.131 0.362 Gapped Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,408,757 Number of extensions: 103718 Number of successful extensions: 316 Number of sequences better than 10.0: 1 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 24 Length of query: 311 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 219 Effective length of database: 3,462,782 Effective search space: 758349258 Effective search space used: 758349258 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (25.9 bits)