RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780448|ref|YP_003064861.1| hypothetical protein
CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62]
         (311 letters)



>d2ogqa2 d.223.1.2 (A:507-593) Serine/threonine-protein kinase plk
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 27.0 bits (60), Expect = 1.8
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 247 IYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNAPPELH 305
           I  LSN   S Q N  +D T   +      VTY++         +   +       EL 
Sbjct: 16  ILHLSNG--SVQINFFQDHTKLILCPLMAAVTYID-EKRDFRTYRLSLLEEYGCCKELA 71


>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 237

 Score = 27.0 bits (58), Expect = 2.0
 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 179 NLLD-ASRATEFIIDGKKINIDSAQNML 205
            LL  AS+  +++ DGK I     + + 
Sbjct: 208 TLLQSASKGAQYLGDGKNITSTQVEELA 235


>d1zd0a1 d.329.1.1 (A:9-144) Hypothetical protein PF0523 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 136

 Score = 27.1 bits (60), Expect = 2.1
 Identities = 6/37 (16%), Positives = 17/37 (45%)

Query: 195 KINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIF 231
           +I I        ++NK+F +     Q++++   + + 
Sbjct: 9   EICISKVWLTDEQINKLFDRFKGDYQVVNAECADKVI 45


>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2,
           N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 157

 Score = 26.4 bits (58), Expect = 3.3
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAEL---NKIFPK 214
           QK+G   FRDF  L   +  K L++     +     +K+  +  + + +       I  +
Sbjct: 33  QKLGYLLFRDF-CLKHLEEAKPLVEFYEEIKKY---EKLETEEERLVCSREIFDTYIMKE 88

Query: 215 DFEKVQLISSYAHEHIFC----KPFTKDLLNLANKNIYQL 250
                   S  A EH+      K    DL     + I Q 
Sbjct: 89  LLACSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQN 128


>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent
           DNA ligase {Thermus filiformis [TaxId: 276]}
          Length = 314

 Score = 26.0 bits (56), Expect = 4.0
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 237 KDLLNLANKNIYQLSNPRYS-YQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGI 295
           +DL+   N   Y L++P  S  +++ L  +      +     +  + +            
Sbjct: 14  RDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGARPLEPTF 73

Query: 296 LSRNAPPELHFSSYVN 311
                P  ++      
Sbjct: 74  RPVRHPTRMYSLDNAF 89


>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase
           {Streptomyces plicatus [TaxId: 1922]}
          Length = 356

 Score = 25.9 bits (56), Expect = 4.2
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 140 DRSQAIFQKMPLEEYPRLQKIGINYFR 166
                 ++     + P  +  GI+++R
Sbjct: 323 THDWDTYKVRLAAQAPYWEAAGIDFYR 349


>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium
           botulinum, serotype A [TaxId: 1491]}
          Length = 417

 Score = 25.6 bits (56), Expect = 5.7
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 18/117 (15%)

Query: 193 GKKINIDSAQNMLAELNKIFPKDFEKV---QLISSYAHEHIF---CKPFTKDLLNLANKN 246
           G  I+ +        +N I P    +     L+       I    CK F  ++LNL    
Sbjct: 118 GSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNG 177

Query: 247 IYQLS----NPRYSYQFNTLKDKTISFVAKEEG--------LVTYLNGSLHRNYGIK 291
                    +P +++ F    +   + +             L   L  + HR YGI 
Sbjct: 178 YGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIA 234


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,046,412
Number of extensions: 45198
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 12
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)