RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter asiaticus str. psy62] (311 letters) >d2ogqa2 d.223.1.2 (A:507-593) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Score = 27.0 bits (60), Expect = 1.8 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 3/59 (5%) Query: 247 IYQLSNPRYSYQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGILSRNAPPELH 305 I LSN S Q N +D T + VTY++ + + EL Sbjct: 16 ILHLSNG--SVQINFFQDHTKLILCPLMAAVTYID-EKRDFRTYRLSLLEEYGCCKELA 71 >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Score = 27.0 bits (58), Expect = 2.0 Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 179 NLLD-ASRATEFIIDGKKINIDSAQNML 205 LL AS+ +++ DGK I + + Sbjct: 208 TLLQSASKGAQYLGDGKNITSTQVEELA 235 >d1zd0a1 d.329.1.1 (A:9-144) Hypothetical protein PF0523 {Pyrococcus furiosus [TaxId: 2261]} Length = 136 Score = 27.1 bits (60), Expect = 2.1 Identities = 6/37 (16%), Positives = 17/37 (45%) Query: 195 KINIDSAQNMLAELNKIFPKDFEKVQLISSYAHEHIF 231 +I I ++NK+F + Q++++ + + Sbjct: 9 EICISKVWLTDEQINKLFDRFKGDYQVVNAECADKVI 45 >d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 157 Score = 26.4 bits (58), Expect = 3.3 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 11/100 (11%) Query: 158 QKIGINYFRDFKLLGTNKVYKNLLDASRATEFIIDGKKINIDSAQNMLAEL---NKIFPK 214 QK+G FRDF L + K L++ + +K+ + + + + I + Sbjct: 33 QKLGYLLFRDF-CLKHLEEAKPLVEFYEEIKKY---EKLETEEERLVCSREIFDTYIMKE 88 Query: 215 DFEKVQLISSYAHEHIFC----KPFTKDLLNLANKNIYQL 250 S A EH+ K DL + I Q Sbjct: 89 LLACSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQN 128 >d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Length = 314 Score = 26.0 bits (56), Expect = 4.0 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 1/76 (1%) Query: 237 KDLLNLANKNIYQLSNPRYS-YQFNTLKDKTISFVAKEEGLVTYLNGSLHRNYGIKAEGI 295 +DL+ N Y L++P S +++ L + + + + + Sbjct: 14 RDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGARPLEPTF 73 Query: 296 LSRNAPPELHFSSYVN 311 P ++ Sbjct: 74 RPVRHPTRMYSLDNAF 89 >d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase {Streptomyces plicatus [TaxId: 1922]} Length = 356 Score = 25.9 bits (56), Expect = 4.2 Identities = 4/27 (14%), Positives = 11/27 (40%) Query: 140 DRSQAIFQKMPLEEYPRLQKIGINYFR 166 ++ + P + GI+++R Sbjct: 323 THDWDTYKVRLAAQAPYWEAAGIDFYR 349 >d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Length = 417 Score = 25.6 bits (56), Expect = 5.7 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 18/117 (15%) Query: 193 GKKINIDSAQNMLAELNKIFPKDFEKV---QLISSYAHEHIF---CKPFTKDLLNLANKN 246 G I+ + +N I P + L+ I CK F ++LNL Sbjct: 118 GSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHEVLNLTRNG 177 Query: 247 IYQLS----NPRYSYQFNTLKDKTISFVAKEEG--------LVTYLNGSLHRNYGIK 291 +P +++ F + + + L L + HR YGI Sbjct: 178 YGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAGHRLYGIA 234 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.315 0.131 0.362 Gapped Lambda K H 0.267 0.0622 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,046,412 Number of extensions: 45198 Number of successful extensions: 135 Number of sequences better than 10.0: 1 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 12 Length of query: 311 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 226 Effective length of database: 1,240,546 Effective search space: 280363396 Effective search space used: 280363396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (24.4 bits)