Query gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 459
No_of_seqs 4 out of 6
Neff 1.6
Searched_HMMs 33803
Date Wed Jun 1 13:08:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780449.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1r71_A Transcriptional repres 30.1 33 0.00098 14.3 2.5 50 343-392 15-64 (102)
2 >2cr7_A Paired amphipathic hel 26.9 38 0.0011 13.9 4.3 54 338-391 6-67 (80)
3 >2czy_A Paired amphipathic hel 24.5 42 0.0012 13.7 4.1 50 342-391 4-61 (77)
4 >1nm3_A Protein HI0572; hybrid 21.1 47 0.0014 13.3 1.5 44 297-341 94-137 (166)
5 >1vk5_A Expressed protein; str 20.7 49 0.0015 13.2 1.7 41 319-362 18-58 (157)
6 >3dan_A Cytochrome P450 74A2; 19.6 42 0.0012 13.6 1.0 17 88-104 12-28 (154)
7 >2od6_A Hypothetical protein; 17.3 58 0.0017 12.7 1.9 25 344-368 72-96 (110)
8 >2v4u_A CTP synthase 2; pyrimi 17.2 59 0.0017 12.7 2.2 37 279-321 242-279 (289)
9 >3evy_A Putative type I restri 16.7 60 0.0018 12.6 2.8 92 334-425 117-216 (239)
10 >2w7t_A CTP synthetase, putati 16.6 61 0.0018 12.6 1.3 42 274-321 125-166 (180)
No 1
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:77-178)
Probab=30.12 E-value=33 Score=14.31 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHH
Q ss_conf 00899999998550688546445565420402222689998726003333
Q gi|254780449|r 343 DNSAEAIQKLMNQFAKNPKQLQLISSYANQSIFADSVVHLMQSIPEFAKY 392 (459)
Q Consensus 343 dN~~~mL~~l~k~f~kN~e~~QLISSYAnQ~IF~qsyi~L~sehPe~~kY 392 (459)
-+.-++|-+|.+.|-|+|+.++-.-..+-|.|-|-++-.|.-.+-+..+-
T Consensus 15 c~d~~~lneL~~l~kk~PeeV~aw~~d~~qEITR~sVk~lre~L~~k~~~ 64 (102)
T 1r71_A 15 VRDVTVVNELVTAFKKRPEEVEAWLDDDTQEITRGTVKLLREFLDEKGRD 64 (102)
T ss_dssp CCCHHHHHHHHHHHHHCHHHHHHHHHCTTCCCSHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 86799999998613405999999999871046799999999883213589
No 2
>>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A (A:)
Probab=26.88 E-value=38 Score=13.94 Aligned_cols=54 Identities=17% Similarity=0.384 Sum_probs=42.0
Q ss_pred CEECCCCHHHHHHHHHHHHCCCHH----HHHHHHHHHCCCH----HHHHHHHHHHHCHHHHH
Q ss_conf 454200089999999855068854----6445565420402----22268999872600333
Q gi|254780449|r 338 KKLARDNSAEAIQKLMNQFAKNPK----QLQLISSYANQSI----FADSVVHLMQSIPEFAK 391 (459)
Q Consensus 338 kkIsvdN~~~mL~~l~k~f~kN~e----~~QLISSYAnQ~I----F~qsyi~L~sehPe~~k 391 (459)
....++.+..-+++.-..|.-+|+ |+.+...|.++.| +..-+..||..|||+-.
T Consensus 6 ~~~t~~~A~~yl~kVK~~f~~~p~~Y~~FL~il~~~~~~~i~~~~v~~~v~~Ll~~hpdLl~ 67 (80)
T 2cr7_A 6 SGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIV 67 (80)
T ss_dssp CCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 88767999999999999981698999999999999987689899999999999766889999
No 3
>>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus} (A:)
Probab=24.51 E-value=42 Score=13.66 Aligned_cols=50 Identities=18% Similarity=0.414 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHCCCHH----HHHHHHHHHCCCH----HHHHHHHHHHHCHHHHH
Q ss_conf 00089999999855068854----6445565420402----22268999872600333
Q gi|254780449|r 342 RDNSAEAIQKLMNQFAKNPK----QLQLISSYANQSI----FADSVVHLMQSIPEFAK 391 (459)
Q Consensus 342 vdN~~~mL~~l~k~f~kN~e----~~QLISSYAnQ~I----F~qsyi~L~sehPe~~k 391 (459)
.+.+-+-+++.-..|.-+++ |+++...|.++.| +...+-.||..||++..
T Consensus 4 ~~dA~~fl~kVK~~f~~~p~~Y~~Fl~il~~~~~~~~~~~~v~~~v~~Ll~~~pdLl~ 61 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIV 61 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 4899999999999980697999999999999987589899999999999766889999
No 4
>>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} (A:1-166)
Probab=21.13 E-value=47 Score=13.33 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=28.5
Q ss_pred HCCCCHHCCHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCEEC
Q ss_conf 313311207167878887725651124441147247997094542
Q gi|254780449|r 297 EFKMVPLSDQTLFRDFQGLCGKNIDNQFILDLNRASFIFNGKKLA 341 (459)
Q Consensus 297 e~~~~~~~~~~~frdf~~l~g~n~dn~fllD~NrasFIvNgkkIs 341 (459)
.|+++.-.+....|.|.. ........+-...-|++||+|.|+|-
T Consensus 94 ~~~~l~D~~~~~~~~~g~-~~~~~~~~~~~~~~p~~~vId~G~I~ 137 (166)
T 1nm3_A 94 NISFIPDGNGEFTEGXGX-LVGKEDLGFGKRSWRYSXLVKNGVVE 137 (166)
T ss_dssp TSEEEECTTSHHHHHTTC-EEECTTTTCCEEECCEEEEEETTEEE
T ss_pred CEEECCCCCCHHHHHCCC-EECCCCCCCCCCCCEEEEEEECCEEE
T ss_conf 666604786078885687-45564576850661499999899899
No 5
>>1vk5_A Expressed protein; structural genomics, unknown function, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} (A:)
Probab=20.73 E-value=49 Score=13.17 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=18.3
Q ss_pred CCHHHHHHCCCCEEEEEECCEECCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 51124441147247997094542000899999998550688546
Q gi|254780449|r 319 NIDNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQFAKNPKQ 362 (459)
Q Consensus 319 n~dn~fllD~NrasFIvNgkkIsvdN~~~mL~~l~k~f~kN~e~ 362 (459)
-.|+.+-+|.+..---..+.+| -++||-|+.||++|--...
T Consensus 18 ~~d~~~~~~~s~~~~~~e~~li---RrAEmYQ~YMKqiPIP~~~ 58 (157)
T 1vk5_A 18 ISDGFSPLDTSHRDVADEGSLL---RRAEMYQDYMKQVPIPTNR 58 (157)
T ss_dssp ------------------CTTH---HHHHHHHHHHHTSCCCSSC
T ss_pred HHCCCCCCCCHHHHCCCHHHHH---HHHHHHHHHHHHCCCCCCC
T ss_conf 7427888884132035206899---9999999998738988567
No 6
>>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A* (A:1-95,A:344-402)
Probab=19.63 E-value=42 Score=13.65 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.4
Q ss_pred CCCCCCHHHHHHHHHHH
Q ss_conf 57744105766510257
Q gi|254780449|r 88 KGNYGWGIVGAISDAAL 104 (459)
Q Consensus 88 kgnygwg~~g~isd~al 104 (459)
-|.|||-.+|++.|---
T Consensus 12 pg~yg~p~~~~~~dr~d 28 (154)
T 3dan_A 12 PGSYGIPFFQPIKDRLE 28 (154)
T ss_dssp CCCCCSTTHHHHHHHHH
T ss_pred CCCCCCCEEECHHHHHH
T ss_conf 98999997742447999
No 7
>>2od6_A Hypothetical protein; JCVI_PEP_1096682647733, metagenomics, structural genomics, joint center for structural genomics, JCSG; HET: MSE OHA; 1.85A {Uncultured marine organism} (A:)
Probab=17.35 E-value=58 Score=12.68 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 0899999998550688546445565
Q gi|254780449|r 344 NSAEAIQKLMNQFAKNPKQLQLISS 368 (459)
Q Consensus 344 N~~~mL~~l~k~f~kN~e~~QLISS 368 (459)
+-..-++-|..+|-|||-|+||..+
T Consensus 72 sfeaniayledtfgknpvflqlvtt 96 (110)
T 2od6_A 72 SFEANIAYLEDTFGKNPVFLQLVTT 96 (110)
T ss_dssp HHHHHHHHHHHHTTSSTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999997565776522451
No 8
>>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A (A:)
Probab=17.22 E-value=59 Score=12.66 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=29.4
Q ss_pred HHCC-CCCCCCCCCCCCHHHCCCCHHCCHHHHHHHHHHHCCCCH
Q ss_conf 4086-544332223321343133112071678788877256511
Q gi|254780449|r 279 KKIP-FIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGLCGKNID 321 (459)
Q Consensus 279 ~k~p-~~~~~~~~~~~~~~e~~~~~~~~~~~frdf~~l~g~n~d 321 (459)
..-| ++|-|| |-|+..-|..+..+|+.|--.|-+...
T Consensus 242 ~~~~f~~GVQf------HPE~~~~~~~~~~Lf~~Fv~~~~~~~~ 279 (289)
T 2v4u_A 242 ANHPYFVGVQF------HPEFSSRPMKPSPPYLGLLLAATGNLN 279 (289)
T ss_dssp SSSSCEEEESS------BGGGGCBTTBCCHHHHHHHHHHHTCHH
T ss_pred CCCCEEEEECC------CCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89980899768------754568999988039999999987489
No 9
>>3evy_A Putative type I restriction enzyme R protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Bacteroides fragilis nctc 9343} (A:)
Probab=16.71 E-value=60 Score=12.58 Aligned_cols=92 Identities=10% Similarity=0.021 Sum_probs=40.2
Q ss_pred EEECCEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHH--------HHHCHHHHHHHCCCCCCEEEEEE
Q ss_conf 9709454200089999999855068854644556542040222268999--------87260033331136873069999
Q gi|254780449|r 334 IFNGKKLARDNSAEAIQKLMNQFAKNPKQLQLISSYANQSIFADSVVHL--------MQSIPEFAKYASKSGSASKFTAK 405 (459)
Q Consensus 334 IvNgkkIsvdN~~~mL~~l~k~f~kN~e~~QLISSYAnQ~IF~qsyi~L--------~sehPe~~kYq~Ks~Sr~sY~~n 405 (459)
.+....|++|-=.+.|+++++.-....+.++-|.-+-+...=-.+...+ +...|....+..-.+.-..|...
T Consensus 117 ~i~~~~In~dYI~~Li~~~~~~~~~~~~~~~~i~~~i~~~~~~r~k~~lI~~fi~~~~~~~~~~~~~~~v~~~~~~~~~~ 196 (239)
T 3evy_A 117 LVHRDIINVMYILALLQDLKPESSSYPKDRKAVLDTMDSNPELRSKIALIDNFIKLHIDGRQSNDLPADMESDLDKYIAT 196 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HEECCEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 10042686999999999987424338889999999985588776789999999998714543232022499999999999
Q ss_pred EEECCEEEEEEECCCEEEEE
Q ss_conf 86076699998323101330
Q gi|254780449|r 406 TLTNGEVAFTAKYTTKVQAV 425 (459)
Q Consensus 406 tL~DG~V~FtAk~~sdl~~~ 425 (459)
..+.-...|..+.--+.+.+
T Consensus 197 ~~~~~i~~~~~~~gl~~~~l 216 (239)
T 3evy_A 197 QKAIAIEQVATEEGIDSTLL 216 (239)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999999949599999
No 10
>>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} (A:1-129,A:223-273)
Probab=16.61 E-value=61 Score=12.57 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHHHHCCCCCCCCCCCCCCHHHCCCCHHCCHHHHHHHHHHHCCCCH
Q ss_conf 566754086544332223321343133112071678788877256511
Q gi|254780449|r 274 TKAIDKKIPFIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGLCGKNID 321 (459)
Q Consensus 274 t~ai~~k~p~~~~~~~~~~~~~~e~~~~~~~~~~~frdf~~l~g~n~d 321 (459)
|-.+|..-=|+|-|| |-||+--|..-..+|+.|-.-+-.+..
T Consensus 125 S~e~D~~~~~~~~q~------hpe~~s~~~~~~~~f~~~~~a~~~~~~ 166 (180)
T 2w7t_A 125 SEEFNSLRFFLAVQF------HPEFISTPMDPAPTYLSFMAAAAKKDY 166 (180)
T ss_dssp ETTTCTSSSEEEESS------CGGGSCBTTBCCHHHHHHHHHHHTCCC
T ss_pred HHHCCCCCEEEEECC------CCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 312389980899767------713568999988239999999861563
Done!