Query         gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 459
No_of_seqs    4 out of 6
Neff          1.6 
Searched_HMMs 23785
Date          Mon May 30 11:32:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780449.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2wfc_A Peroxiredoxin 5, PRDX5;  47.1     6.7 0.00028   17.9   1.6   26  327-352   122-159 (167)
  2 3ixr_A Bacterioferritin comigr  43.8     9.9 0.00041   16.8   2.0   56  297-352   109-173 (179)
  3 1tp9_A Peroxiredoxin, PRX D (t  40.0       4 0.00017   19.4  -0.5   15  327-341   126-140 (162)
  4 3gkn_A Bacterioferritin comigr  38.8      14 0.00059   15.8   2.2   60  297-357    93-161 (163)
  5 1xiy_A Peroxiredoxin, pfaop; a  30.2      15 0.00061   15.7   1.1   66  282-352    91-177 (182)
  6 2pwj_A Mitochondrial peroxired  29.0      10 0.00043   16.7   0.2   55  285-341    93-148 (171)
  7 1prx_A HORF6; peroxiredoxin, h  22.0      25   0.001   14.2   1.0   58  295-352    97-164 (224)
  8 2cr7_A Paired amphipathic heli  21.6      33  0.0014   13.3   4.5   58  338-395     6-75  (80)
  9 1g1e_B SIN3A; four-helix bundl  21.4      33  0.0014   13.3   3.2   54  337-390     5-79  (89)
 10 1vk5_A Expressed protein; stru  21.4      34  0.0014   13.3   1.7   18  345-362    41-58  (157)

No 1  
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=47.14  E-value=6.7  Score=17.90  Aligned_cols=26  Identities=12%  Similarity=0.258  Sum_probs=18.0

Q ss_pred             CCCCEEEEEECCEECC------------CCHHHHHHHH
Q ss_conf             1472479970945420------------0089999999
Q gi|254780449|r  327 DLNRASFIFNGKKLAR------------DNSAEAIQKL  352 (459)
Q Consensus       327 D~NrasFIvNgkkIsv------------dN~~~mL~~l  352 (459)
                      -..|++||+|+++|-.            ..+.++|+.|
T Consensus       122 ~~~R~tfIiddG~I~~~~ve~~~~~~~~s~a~~vL~~L  159 (167)
T 2wfc_A          122 RSKRYSLVIEDGVVTKVNVEPDGKGLTCSLAPNILSQL  159 (167)
T ss_dssp             EECCEEEEEETTEEEEEEECTTSSSSSTTSHHHHHHHH
T ss_pred             EEEEEEEEEECCEEEEEEEECCCCCCCCCCHHHHHHHC
T ss_conf             68899999979999999997899877777599999976


No 2  
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=43.84  E-value=9.9  Score=16.79  Aligned_cols=56  Identities=21%  Similarity=0.455  Sum_probs=32.2

Q ss_pred             HCCCCHHCCHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEE-CCEEC--------CCCHHHHHHHH
Q ss_conf             3133112071678788877256511244411472479970-94542--------00089999999
Q gi|254780449|r  297 EFKMVPLSDQTLFRDFQGLCGKNIDNQFILDLNRASFIFN-GKKLA--------RDNSAEAIQKL  352 (459)
Q Consensus       297 e~~~~~~~~~~~frdf~~l~g~n~dn~fllD~NrasFIvN-gkkIs--------vdN~~~mL~~l  352 (459)
                      .|+.+.-.+....|.|.-+--+..+...+....|++|||| +|+|-        .++..++|+.|
T Consensus       109 ~fpllsD~~~~v~k~ygv~~~~~~~g~~~~~~~R~tfvID~~G~I~~~~~~~~~~~~~eevL~~L  173 (179)
T 3ixr_A          109 TFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKL  173 (179)
T ss_dssp             CSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf             78764479853899849722444357545750567999899998999881899886899999999


No 3  
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=40.00  E-value=4  Score=19.41  Aligned_cols=15  Identities=13%  Similarity=0.248  Sum_probs=10.6

Q ss_pred             CCCCEEEEEECCEEC
Q ss_conf             147247997094542
Q gi|254780449|r  327 DLNRASFIFNGKKLA  341 (459)
Q Consensus       327 D~NrasFIvNgkkIs  341 (459)
                      -+.|++||+|+++|.
T Consensus       126 ~s~R~~fiIddg~I~  140 (162)
T 1tp9_A          126 RSRRFALLVDDLKVK  140 (162)
T ss_dssp             EECCEEEEEETTEEE
T ss_pred             EEEEEEEEEECCEEE
T ss_conf             479999999899999


No 4  
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreductase; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=38.82  E-value=14  Score=15.77  Aligned_cols=60  Identities=22%  Similarity=0.428  Sum_probs=33.1

Q ss_pred             HCCCCHHCCHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEE-CCEEC--------CCCHHHHHHHHHHHHC
Q ss_conf             3133112071678788877256511244411472479970-94542--------0008999999985506
Q gi|254780449|r  297 EFKMVPLSDQTLFRDFQGLCGKNIDNQFILDLNRASFIFN-GKKLA--------RDNSAEAIQKLMNQFA  357 (459)
Q Consensus       297 e~~~~~~~~~~~frdf~~l~g~n~dn~fllD~NrasFIvN-gkkIs--------vdN~~~mL~~l~k~f~  357 (459)
                      .|+.+...+..+.|.|.-+--+..+........|.+||+| .|+|-        .++..++|+.+ +..+
T Consensus        93 ~~~~l~d~~~~~~~~~gv~~~~~~~~~~~~~~~~~tflID~~G~I~~~~~~~~~~~~~~~iL~~l-ka~~  161 (163)
T 3gkn_A           93 AFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAAL-KAHA  161 (163)
T ss_dssp             SSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHH-HHHC
T ss_pred             CCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHH-HHHC
T ss_conf             86643483278999719400355467534555638999918998999981999786999999999-9753


No 5  
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=30.22  E-value=15  Score=15.68  Aligned_cols=66  Identities=15%  Similarity=0.192  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCCCCHHHCCCCHHCCHHHHHHHHHHHCCCCH--HHHH-HCCCCEEEEEECCEEC-----------------
Q ss_conf             6544332223321343133112071678788877256511--2444-1147247997094542-----------------
Q gi|254780449|r  282 PFIGNQWRDINTAHSEFKMVPLSDQTLFRDFQGLCGKNID--NQFI-LDLNRASFIFNGKKLA-----------------  341 (459)
Q Consensus       282 p~~~~~~~~~~~~~~e~~~~~~~~~~~frdf~~l~g~n~d--n~fl-lD~NrasFIvNgkkIs-----------------  341 (459)
                      ||.-+.|..-+.+ ...+|++-.+    .+|--.+|-..|  ..+| .-..|+.||+++++|-                 
T Consensus        91 pfVm~AW~~~~~~-~~i~~lsD~~----g~ftk~lGl~~d~~~~g~g~Rs~Rya~iiddg~I~~~~vE~~~~~~~~~dp~  165 (182)
T 1xiy_A           91 IYVLKSWFKSMDI-KKIKYISDGN----SSFTDSMNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPY  165 (182)
T ss_dssp             HHHHHHHHHHTTC-CSSEEEECTT----SHHHHHTTCEEECGGGTCCEEECCEEEEEETTEEEEEEECSSCCTTCSSCCC
T ss_pred             HHHHHHHHHHCCC-CCCEEEECCC----HHHHHHCCCEECCCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCC
T ss_conf             9999999974663-4366811787----8999864981435668880877779999989989999983798778889875


Q ss_pred             -CCCHHHHHHHH
Q ss_conf             -00089999999
Q gi|254780449|r  342 -RDNSAEAIQKL  352 (459)
Q Consensus       342 -vdN~~~mL~~l  352 (459)
                       +-++.+||+.|
T Consensus       166 ~vSsae~iL~~L  177 (182)
T 1xiy_A          166 DISTVNNVKEFL  177 (182)
T ss_dssp             STTSHHHHHHHH
T ss_pred             CCCCHHHHHHHH
T ss_conf             667999999988


No 6  
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=29.04  E-value=10  Score=16.65  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCHHHCCCCHHCCHHHHHHHHHHHCCCCHHHHHH-CCCCEEEEEECCEEC
Q ss_conf             433222332134313311207167878887725651124441-147247997094542
Q gi|254780449|r  285 GNQWRDINTAHSEFKMVPLSDQTLFRDFQGLCGKNIDNQFIL-DLNRASFIFNGKKLA  341 (459)
Q Consensus       285 ~~~~~~~~~~~~e~~~~~~~~~~~frdf~~l~g~n~dn~fll-D~NrasFIvNgkkIs  341 (459)
                      -..|+.-.-.+..++++.-.+..+-+.+. +. .+....+|- -..|++||+++++|-
T Consensus        93 ~~a~~~~~~~~~~~~~l~D~~~~~~~~~g-~~-~~~~~~g~g~rs~R~afIIddG~I~  148 (171)
T 2pwj_A           93 VNAWAEKIQAKDAIEFYGDFDGSFHKSLE-LT-TDLSAGLLGIRSERWSAYVVDGKVK  148 (171)
T ss_dssp             HHHHHHHTTCTTTSEEEECTTCHHHHHHT-CE-EECTTTTCCEEECCEEEEEETTEEE
T ss_pred             HHHHHHHCCCCCEEEECCCCCHHHHHHHC-CE-ECCCCCCCCCEEEEEEEEEECCEEE
T ss_conf             99887633555235533686318998607-30-6244267774368999999999999


No 7  
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=21.97  E-value=25  Score=14.15  Aligned_cols=58  Identities=19%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             HHHCCCCHHCCHHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCE-E---------CCCCHHHHHHHH
Q ss_conf             343133112071678788877256511244411472479970945-4---------200089999999
Q gi|254780449|r  295 HSEFKMVPLSDQTLFRDFQGLCGKNIDNQFILDLNRASFIFNGKK-L---------ARDNSAEAIQKL  352 (459)
Q Consensus       295 ~~e~~~~~~~~~~~frdf~~l~g~n~dn~fllD~NrasFIvNgkk-I---------svdN~~~mL~~l  352 (459)
                      +-+||++.-.+..+-+.|--+.....+.+-+.=+.|++||||-.. |         .--|..|.|.-+
T Consensus        97 ~l~fpLlsD~~~~ia~~yGv~~~~~~~~~~~~~~~RatFIIDpdg~Ir~~~~~~~~~gR~~~EiLR~l  164 (224)
T 1prx_A           97 KLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVV  164 (224)
T ss_dssp             CCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHH
T ss_pred             CCCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHH
T ss_conf             75436661686689998398334224566654023579998899979999980799897879999999


No 8  
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=21.63  E-value=33  Score=13.29  Aligned_cols=58  Identities=16%  Similarity=0.389  Sum_probs=40.1

Q ss_pred             CEECCCCHHHHHHHHHHHHCCCH----HHHHHHHHHHCCCH----HHHHHHHHHHHCHHH----HHHHCC
Q ss_conf             45420008999999985506885----46445565420402----222689998726003----333113
Q gi|254780449|r  338 KKLARDNSAEAIQKLMNQFAKNP----KQLQLISSYANQSI----FADSVVHLMQSIPEF----AKYASK  395 (459)
Q Consensus       338 kkIsvdN~~~mL~~l~k~f~kN~----e~~QLISSYAnQ~I----F~qsyi~L~sehPe~----~kYq~K  395 (459)
                      ....++.+..-+.+.-..|.-++    +|+.++..|.++.+    +++-+..||..||++    +.|-|+
T Consensus         6 ~~~~v~dA~~fl~kVK~~f~d~p~~Y~~FL~il~~~~~~~~~~~~v~~~v~~Lf~~~pdLl~~F~~FLP~   75 (80)
T 2cr7_A            6 SGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPS   75 (80)
T ss_dssp             CCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf             9987899999999999998238599999999999998679989999999999985388999999978899


No 9  
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B
Probab=21.44  E-value=33  Score=13.27  Aligned_cols=54  Identities=15%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             CCEECCCCHHHHHHHHHHHHCCCH----HHHHHHHHHHCCCH-----------------HHHHHHHHHHHCHHHH
Q ss_conf             945420008999999985506885----46445565420402-----------------2226899987260033
Q gi|254780449|r  337 GKKLARDNSAEAIQKLMNQFAKNP----KQLQLISSYANQSI-----------------FADSVVHLMQSIPEFA  390 (459)
Q Consensus       337 gkkIsvdN~~~mL~~l~k~f~kN~----e~~QLISSYAnQ~I-----------------F~qsyi~L~sehPe~~  390 (459)
                      ++.+..+.+-.-+.+....|.-+|    +|+.+...|-++.|                 ...-+..||..||++-
T Consensus         5 ~~p~~~~dA~~yl~kVK~rF~d~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLi   79 (89)
T 1g1e_B            5 NQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLL   79 (89)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf             799858999999999999982492999999999999986566742212223223339999999999984587999


No 10 
>1vk5_A Expressed protein; structural genomics, unknown function, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=21.43  E-value=34  Score=13.27  Aligned_cols=18  Identities=28%  Similarity=0.283  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHCCCHHH
Q ss_conf             899999998550688546
Q gi|254780449|r  345 SAEAIQKLMNQFAKNPKQ  362 (459)
Q Consensus       345 ~~~mL~~l~k~f~kN~e~  362 (459)
                      ++||-|+.||++|--...
T Consensus        41 rAEmYQ~yMkqiPIP~~~   58 (157)
T 1vk5_A           41 RAEMYQDYMKQVPIPTNR   58 (157)
T ss_dssp             HHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHHHCCCCCCC
T ss_conf             999999998738988566


Done!