RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780449|ref|YP_003064862.1| hypothetical protein
CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62]
         (459 letters)



>gnl|CDD|146355 pfam03677, UPF0137, Uncharacterized protein family (UPF0137).  This
           family includes GP6-D a virulence plasmid encoded
           protein.
          Length = 244

 Score = 28.3 bits (63), Expect = 4.5
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 3   ISEINKYFPPNNNIERKEIADK-LIKNISIVDKTMDVLPLYHQVREL-TQNKASTEQVID 60
           I  + K  P + N + + I      +N  + +K +++L L      L   N    EQ+  
Sbjct: 178 IDILRKELPLSRNKDVETIDKSDDRRNKQLSEKLLEILRLLCSCVSLSEYNLNLLEQLFK 237


>gnl|CDD|114259 pfam05527, DUF758, Domain of unknown function (DUF758).  Family
          of eukaryotic proteins with unknown function, which are
          induced by tumour necrosis factor.
          Length = 186

 Score = 27.7 bits (62), Expect = 6.5
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 21 IADKLIKNISIVDKTMDVL-PLYHQVRELTQNKASTEQVIDISTKVKDVAVDVAV 74
          +A K + N+ I D + ++L  LY   +E T NK   ++VI    K   +AV + V
Sbjct: 21 MASKSVANMFIDDTSSEILDELYRVTKEYTGNKKEAQKVIKNLIK---IAVKIGV 72


>gnl|CDD|36169 KOG0951, KOG0951, KOG0951, RNA helicase BRR2, DEAD-box superfamily
           [RNA processing and modification].
          Length = 1674

 Score = 27.6 bits (61), Expect = 8.0
 Identities = 15/62 (24%), Positives = 25/62 (40%)

Query: 245 PALESIYQRGKIFSNTIKNNAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKMVPLS 304
           P LESI  R    S + +  + +  L+ T    +    F+      +    S ++ VPL 
Sbjct: 455 PVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLK 514

Query: 305 DQ 306
            Q
Sbjct: 515 QQ 516


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.313    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0712    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,757,500
Number of extensions: 235935
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 10
Length of query: 459
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 362
Effective length of database: 4,167,664
Effective search space: 1508694368
Effective search space used: 1508694368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.5 bits)