RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780449|ref|YP_003064862.1| hypothetical protein
CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62]
(459 letters)
>gnl|CDD|162353 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production.
Length = 392
Score = 32.3 bits (74), Expect = 0.28
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 10 FPPNNNIERKEIADKLIKNI-SIVDKTMDVLPLYHQVRELTQNKASTEQVIDISTKVKDV 68
PP +N + ++ I I ++D+ DVLP Q+ E + V DI++ +
Sbjct: 52 LPPPDNP-PENTEEEPIDIIEKLLDEAEDVLP---QLEEAYKGDRPDLIVYDIASWTGRL 107
Query: 69 AVDV----AVSMIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVGYGARAAINLVRGG 123
+S P + EF++ G A A + Y AR + L G
Sbjct: 108 LARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEEGAIAERGLAEYVARLSALLEEHG 166
>gnl|CDD|178919 PRK00182, tatB, sec-independent translocase; Provisional.
Length = 160
Score = 29.8 bits (67), Expect = 1.4
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 192 AEKSAISQKITTNSTTEIGKTTEVVEESISKINSQLSKSTPQGIWTKALTKADPALESIY 251
A ++AI+ + G+ + + +++I + P+ TKAL D + +
Sbjct: 39 AARTAINNA-KQQLDGDFGEEFDEFRKPLNQIA-SYRRMGPKTAITKALFDGDDSFLDDF 96
Query: 252 QRGKIFSNTIKNNAFIEKLAHTTKAIDKKIP 282
KI ++ + A ++ A +A +
Sbjct: 97 DPKKIMADGTEGEAQRQQQASAGRADNNANV 127
>gnl|CDD|178117 PLN02501, PLN02501, digalactosyldiacylglycerol synthase.
Length = 794
Score = 29.6 bits (66), Expect = 2.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 233 QGIW--TKALTKADPALESIYQRGKIFSNTIKNNAFIEKLAHTTKAIDKK 280
G W +AL LE + +IF KN+ F+EKL + KAI K+
Sbjct: 168 FGEWEPIRALKTRFRELEKRSESLEIFGG-FKNSEFVEKLKSSLKAIYKE 216
>gnl|CDD|185451 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.9 bits (65), Expect = 2.5
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 212 TTEVVEESISKINS------QLSKSTPQGIWTKALTKADPALESIYQ 252
T E VE+ +++ +L +TP+ +W + L K + ALE +
Sbjct: 1100 TKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEE 1146
>gnl|CDD|182003 PRK09628, oorB, 2-oxoglutarate-acceptor oxidoreductase subunit
OorB; Reviewed.
Length = 277
Score = 28.9 bits (65), Expect = 2.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 224 NSQLSKSTPQGIWT 237
NSQ S +TP+G+WT
Sbjct: 130 NSQTSPTTPKGMWT 143
>gnl|CDD|179745 PRK04135, PRK04135, cofactor-independent phosphoglycerate mutase;
Provisional.
Length = 395
Score = 28.7 bits (65), Expect = 3.4
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 147 ATEKTAKLTALTKEGITSIRTIEGSSVTIKSES 179
+TE+ AKL A E I+ IEG V
Sbjct: 122 STEENAKLVAKLSEA---IKEIEGVEVFFYPGK 151
>gnl|CDD|131854 TIGR02807, cas6_var, CRISPR-associated protein, Cas6-related.
Members of this protein family resemble the Cas6
proteins described by TIGR01877 in having a C-terminal
motif GXGXXXXXGXG, where the single X of each GXG is
hydrophobic and the spacer XXXXX has at least one Lys or
Arg. Examples are found in cas gene operons of CRISPR
regions in Anabaena variabilis ATCC 29413, Leptospira
interrogans, Gemmata obscuriglobus UQM 2246, and twice
in Myxococcus xanthus DK 1622. Oddly, an orphan member
is found in Thiobacillus denitrificans ATCC 25259, whose
genome does not seem to contain other evidence of CRISPR
repeats or cas genes.
Length = 190
Score = 28.5 bits (64), Expect = 3.8
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 427 KIAGKPLKEYGLKISGILSPDKATELQ 453
+IAG + + L++ G LS + + LQ
Sbjct: 148 RIAGFTVVGFALELHG-LSAEDSLRLQ 173
>gnl|CDD|171835 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional.
Length = 577
Score = 28.2 bits (63), Expect = 4.7
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 282 PFIG--NQWRDINTAHSEFK 299
P I N W D N H F+
Sbjct: 43 PVIAILNTWSDANPCHGHFR 62
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 28.0 bits (62), Expect = 5.1
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 4 SEINKYFPPNNNIERKEIADKLIKNISIVDKTMDVLPLYHQVRELTQNKA 53
+E+ + N R+ + D++I N+S D + LPL ++R+L ++A
Sbjct: 390 TEVTEQVTKALN--RRALIDEIINNVSTDDNLLSKLPL--EIRDLIVSQA 435
>gnl|CDD|182801 PRK10876, recB, exonuclease V subunit beta; Provisional.
Length = 1181
Score = 28.0 bits (63), Expect = 5.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 423 QAVDKIAGKPLKEYGLKISGILSPDKATELQRSFYL 458
Q + + PL E G+ +S + + DK E+Q FYL
Sbjct: 992 QWITAVLQTPLNETGVSLSQLSARDKQVEMQ--FYL 1025
>gnl|CDD|180540 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 27.6 bits (62), Expect = 6.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 139 KEACTIAQATEKTAKLTALTKEGITSIR 166
K TI A+E KL L + G T+ R
Sbjct: 11 KIVATIGPASESPEKLRQLIEAGATTAR 38
>gnl|CDD|152692 pfam12257, DUF3608, Protein of unknown function (DUF3608). This
domain family is found in eukaryotes, and is
approximately 280 amino acids in length. The family is
found in association with pfam00610.
Length = 281
Score = 27.8 bits (62), Expect = 6.9
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 29/75 (38%)
Query: 249 SIYQRG-KIFSNTIKNNAFI--------------------------EKLAHTTKAIDKKI 281
IY+ G K+FS I N I E + H K ++
Sbjct: 45 GIYKNGKKVFSGYIGENTKIVFRSESARLIFLIQISREMWHFEENGEIMFH--KLVNSLF 102
Query: 282 PFIGNQWRDINTAHS 296
P I +W+DINT HS
Sbjct: 103 PKIFKKWKDINTHHS 117
>gnl|CDD|185605 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 27.3 bits (61), Expect = 7.8
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 316 CGKNI-DNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQFAKNPKQLQ 364
CG ++ DN+ I+ LN FI K + KL + AK K L+
Sbjct: 906 CGFDVVDNKVIIYLNLDEFIDLKK---------ELAKLEKKLAKLQKSLE 946
>gnl|CDD|161657 TIGR00375, TIGR00375, conserved hypothetical protein TIGR00375.
The member of this family from Methanococcus jannaschii,
MJ0043, is considerably longer and appears to contain an
intein N-terminal to the region of homology.
Length = 374
Score = 27.2 bits (60), Expect = 8.3
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 68 VAVDVAVSMIPIYGTYREFKKGNYGWGIV----GAISDAALLIPVVGYGARAAINLVRGG 123
V + + + + KK +G I A D A ++P V A I R G
Sbjct: 305 VGPKKGIFTKAVQSLWEKLKK-AFGTEIAVLHEAAEEDLARVVPKVA----ALIVKFRSG 359
Query: 124 SIALKAGTAGT 134
+ LK G GT
Sbjct: 360 KLELKPGGGGT 370
>gnl|CDD|177374 PHA02539, 18, tail sheath protein; Provisional.
Length = 648
Score = 27.3 bits (61), Expect = 8.7
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 122 GGSIALKAGTAGTMIAAKEACTI---AQATEKTAKLTALTKEGITSIRTIEGSSVTIKSE 178
SI TAG+ A + T+ E+ K+T + +G I + + K++
Sbjct: 96 YNSIEYTITTAGSNYAVGDKITVKYNTAVVEEAGKVTKVDTDGKIVAVFIPSAKIIAKAK 155
Query: 179 SIGTKASISSTNTAEKSAISQKITTNSTTEIGKT 212
S+G ++ S T E S+ S + +T +G
Sbjct: 156 SVGVYPTLGSNWTTEISSASGGVA--ATLTLGGI 187
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.313 0.128 0.345
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,852,165
Number of extensions: 425310
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 31
Length of query: 459
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,898,497
Effective search space: 1411255914
Effective search space used: 1411255914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.8 bits)