RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62] (459 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 62.7 bits (152), Expect = 2e-10 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 87/228 (38%) Query: 3 ISEINKYFPPNNNIERKEIADKLI---KNISIVDKTMDVLPLYHQVRELTQNKASTEQ-- 57 +++ N + P + EI+ L+ KN+ +V + LY L + KA + Sbjct: 353 VNKTNSHLPAGKQV---EIS--LVNGAKNL-VV--SGPPQSLYGLNLTLRKAKAPSGLDQ 404 Query: 58 ----------VID-----IST------------KVK-DVAV-DVAVS----MIPIYGTY- 83 +++ + D+ +V+ + IP+Y T+ Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464 Query: 84 ----REFKKGNYGWGIVGAISDAALLIPV-----VGYGARAAINLVRGGSIALKAGTAGT 134 R G+ I I D + +PV + A ++ GG+ L G Sbjct: 465 GSDLRVL-SGS----ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL--GV--- 514 Query: 135 MIAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSES-IG 181 LT K+G T +R I ++ I + G Sbjct: 515 -------------------LTHRNKDG-TGVRVIVAGTLDINPDDDYG 542 Score = 58.8 bits (142), Expect = 3e-09 Identities = 64/432 (14%), Positives = 125/432 (28%), Gaps = 187/432 (43%) Query: 6 INKYFPPNNNIERKEIAD---KLIKNISIVDKTMDVLPLYHQVRELTQNKASTEQV---- 58 + YF E +++ L+ ++ + + L EL + E+V Sbjct: 166 TDDYFE-----ELRDLYQTYHVLVG--DLIKFSAETL------SELIRTTLDAEKVFTQG 212 Query: 59 IDI------STKVKDVA--VDVAVSMIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVG 110 ++I + D + + +S P+ G +I + Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISC-PLIG-----------------------VIQLAH 248 Query: 111 YGARAAINL------VRGGSIALKAGTAG---TMIAAKEACTIAQAT-----EKTAK--L 154 Y A L +R LK G G ++ A IA+ + + + Sbjct: 249 Y-VVTAKLLGFTPGELRS---YLK-GATGHSQGLVTA---VAIAETDSWESFFVSVRKAI 300 Query: 155 TALTKEGITSIRTIEGSSVTIKSESIGTKASISSTNTAEKSAISQKITTNSTTEIGKTT- 213 T L IG + +++ I +S E + Sbjct: 301 TVLF--------------------FIGVR----CYEAYPNTSLPPSILEDSL-ENNEGVP 335 Query: 214 -----------EVVEESISKINSQLSKS---------TPQGIWTKALTKADPALESIYQR 253 E V++ ++K NS L + L + P +S+Y Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-----NLVVSGPP-QSLY-- 387 Query: 254 GKIFSNTIKNNAFIEKLAHTTKA---IDK-KIPF------IGNQWRDINTA--HSEFKMV 301 G + T++ KA +D+ +IPF N++ + + HS Sbjct: 388 G--LNLTLRKA----------KAPSGLDQSRIPFSERKLKFSNRFLPV-ASPFHSHL--- 431 Query: 302 PLSDQTLFRDFQGLCGKNIDNQFIL-DLNRASFIFNGKKLA------------RDNSAEA 348 L + I DL + + FN K + R S Sbjct: 432 -LVPAS---------------DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475 Query: 349 IQKLMNQFAKNP 360 +++++ + P Sbjct: 476 SERIVDCIIRLP 487 Score = 51.9 bits (124), Expect = 3e-07 Identities = 87/512 (16%), Positives = 149/512 (29%), Gaps = 165/512 (32%) Query: 36 MDVLPLYHQVRELTQNKASTEQVIDISTKVKDVAVDVAVSMIPIYGTYR-EFKK--GNYG 92 MD R LT + S E V+ + T + I + +F K Sbjct: 1 MDAYST----RPLTLSHGSLEHVLLVPT-----------ASFFIASQLQEQFNKILPEPT 45 Query: 93 WGIVG---AISDAALLIPVVGYGARAAINLVRGGSIA-LKAGTAG---TMIAAKEACTIA 145 G + A L+ +GY + G L + + +A Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105 Query: 146 QATEKTAKLTALTKEGITSIRT------IEGSSVTIKSESIGTKASISSTNTAEKSAI-- 197 + T + + + I+ + KS S +A A+ AI Sbjct: 106 AKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFG 161 Query: 198 SQKITTNSTT------EIGKT-TEVVEESISKINSQLSKSTPQGIWTKALTKADPALESI 250 Q N+ ++ +T +V + I LS+ L + E + Sbjct: 162 GQ---GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE----------LIRTTLDAEKV 208 Query: 251 YQRG-KIFS-----NTIKNNAFIE------------KLAH---TTKAIDKKIPFIGNQWR 289 + +G I + + ++ +LAH T K + P G + R Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-P--G-ELR 264 Query: 290 DI---NTAHS----------------EF-----KMVPLSDQTLFRDFQGL-CGKNIDNQF 324 T HS F K + LF F G+ C + N Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI----TVLF--FIGVRCYEAYPNTS 318 Query: 325 ILDLNRASFIFNGKK-----LA-RDNSAEAIQKLMNQFAKN---P--KQLQ--LISSYAN 371 + + N + L+ + + E +Q +N+ N P KQ++ L++ N Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKN 376 Query: 372 QSIF-----ADSVVHLM-------------QS-IPEFAKYASKSGSASKFTAKTL--TNG 410 S+ L QS IP F S KF+ + L Sbjct: 377 ---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-F------SERKLKFSNRFLPVA-- 424 Query: 411 EVAFTAKYTTKVQAVDKIAGKPLKEYGLKISG 442 F + A D I K L + + + Sbjct: 425 -SPFHSHLLVP--ASDLIN-KDLVKNNVSFNA 452 Score = 31.8 bits (72), Expect = 0.29 Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 74/232 (31%) Query: 192 AEKSAISQKITTNSTTEIGKT-------TEVVEESISKINSQLSKSTPQGIWTKALTKAD 244 EK ++I N + I +T TE + + I++ ++ + + +G+ + A Sbjct: 1678 GEKG---KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQ 1733 Query: 245 PALESIYQRGKIFSNTIKNNAFIEKLAHTTKAIDKKIP----FIGNQWRDINTAHS--EF 298 PAL T+ A E L +K + IP F G HS E+ Sbjct: 1734 PAL------------TLMEKAAFEDL--KSKGL---IPADATFAG---------HSLGEY 1767 Query: 299 K-MVPLSD--------QTLFRDFQGLCGKNIDNQFIL---DLNRASF---IFNGKKLARD 343 + L+D + +F ++G+ Q + +L R+++ N ++A Sbjct: 1768 AALASLADVMSIESLVEVVF--YRGMT-----MQVAVPRDELGRSNYGMIAINPGRVAAS 1820 Query: 344 NSAEAIQKLMNQFAKNPKQLQLISSY--ANQSIFA-------DSVVHLMQSI 386 S EA+Q ++ + K L I +Y NQ A D+V +++ I Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 59.4 bits (143), Expect = 2e-09 Identities = 101/436 (23%), Positives = 169/436 (38%), Gaps = 106/436 (24%) Query: 62 STKVKDVAVDVAVS---MIPIYGTYREFKK-GNYGWGIVGAISD-----------AALLI 106 S + D+ V+ +S I I G Y +F++ G++ +G + A S+ A + Sbjct: 1109 SVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSR 1168 Query: 107 PVV----GY--GARAAINLVRGGSIALKAGTAGTMIAAKEACTIAQATEKTAKLTALTKE 160 P G+ A I ++ +ALK G I A A AT+K + + Sbjct: 1169 PATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVA----MAATATDKIGRSVPAPGK 1224 Query: 161 GITSIRTIEGSSVTIKSESIGTK----------ASISSTNTAEKSAI---SQKITTNSTT 207 GI + SSV S ++ K A I E A+ +++I + Sbjct: 1225 GILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQN 1284 Query: 208 E--IGKTTEVVEESISKINSQLSKSTPQGIWTKALTKADPALESIYQRGKI--FSNTIKN 263 E + +T E+ E+ SQL + Q W K DP + + RG + + TI + Sbjct: 1285 EFLLERTREIHNEA----ESQLRAAQQQ--WGNDFYKRDPRIAPL--RGALATYGLTIDD 1336 Query: 264 NAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKMVPLSDQT----LFRDF-----QG 314 +TKA DK N+ IN K + S+ +F+ F +G Sbjct: 1337 LGVASFHGTSTKANDK------NESATINEM---MKHLGRSEGNPVIGVFQKFLTGHPKG 1387 Query: 315 LCGKNIDNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQF--AKNP-KQLQL------ 365 G + +N A I N + + +A+ + K++ QF P K L+ Sbjct: 1388 AAGAWM-------MNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAV 1440 Query: 366 -ISSY-----ANQSIFADSVVH---LMQSIPE--FAKYASKSGSASKFTAKTLTNGEV-- 412 I+S+ Q+I VVH L +I E + +Y +K + K K NG + Sbjct: 1441 SITSFGFGQKGGQAI----VVHPDYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYN 1496 Query: 413 -AFTAK----YTTKVQ 423 F +K YT +++ Sbjct: 1497 KLFVSKEHAPYTDELE 1512 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.1 bits (69), Expect = 0.46 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 8/35 (22%) Query: 321 DNQFILDLNRASFIFNGKKLARDNSAE--AIQKLM 353 + Q + L +AS KL D+SA AI+ M Sbjct: 18 EKQALKKL-QASL-----KLYADDSAPALAIKATM 46 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} Length = 508 Score = 28.5 bits (63), Expect = 3.2 Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 22/170 (12%) Query: 205 STTEIGKTTEVVEESISKINSQLSKSTPQGI-WTKALTKADPALESIYQRGKIFSNTIKN 263 S + GKT +S++++ + K PQ I + A ++ + + GK +K Sbjct: 165 SQSGTGKTAAFALTMLSRVDASVPK--PQAICLAPSRELARQIMDVVTEMGKY--TEVKT 220 Query: 264 NAFIEKLAHTTKAIDKKIPFIGN--------QWRDINTAHSEFKMVPLSDQTLFRDFQGL 315 I+ ID +I IG + R ++ + K+ L + D QGL Sbjct: 221 AFGIKDSVPKGAKIDAQI-VIGTPGTVMDLMKRRQLDA--RDIKVFVLDEADNMLDQQGL 277 Query: 316 CGKNIDNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQFAKNPKQLQL 365 +++ + +L N +F+ +E ++K +FA N +++L Sbjct: 278 GDQSMRIKHLLPRNTQIVLFSA------TFSERVEKYAERFAPNANEIRL 321 >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Length = 326 Score = 27.5 bits (60), Expect = 6.8 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 7 NKYFPPNNNIERKEIADKLIKNISIVDKTMDVLPLYHQVRELTQNKASTEQVIDISTKVK 66 Y P + A +L+++ D + Y +++ + + T+ +S K+ Sbjct: 223 TDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEYYDEIKRIFKEPKVTDN-YSLSLKLP 281 Query: 67 DV 68 D Sbjct: 282 DK 283 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.313 0.128 0.345 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,454,936 Number of extensions: 151915 Number of successful extensions: 387 Number of sequences better than 10.0: 1 Number of HSP's gapped: 381 Number of HSP's successfully gapped: 15 Length of query: 459 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 363 Effective length of database: 3,365,806 Effective search space: 1221787578 Effective search space used: 1221787578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 58 (26.3 bits)