RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780449|ref|YP_003064862.1| hypothetical protein
CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62]
(459 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 62.7 bits (152), Expect = 2e-10
Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 87/228 (38%)
Query: 3 ISEINKYFPPNNNIERKEIADKLI---KNISIVDKTMDVLPLYHQVRELTQNKASTEQ-- 57
+++ N + P + EI+ L+ KN+ +V + LY L + KA +
Sbjct: 353 VNKTNSHLPAGKQV---EIS--LVNGAKNL-VV--SGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 58 ----------VID-----IST------------KVK-DVAV-DVAVS----MIPIYGTY- 83
+++ + D+ +V+ + IP+Y T+
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 84 ----REFKKGNYGWGIVGAISDAALLIPV-----VGYGARAAINLVRGGSIALKAGTAGT 134
R G+ I I D + +PV + A ++ GG+ L G
Sbjct: 465 GSDLRVL-SGS----ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL--GV--- 514
Query: 135 MIAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSES-IG 181
LT K+G T +R I ++ I + G
Sbjct: 515 -------------------LTHRNKDG-TGVRVIVAGTLDINPDDDYG 542
Score = 58.8 bits (142), Expect = 3e-09
Identities = 64/432 (14%), Positives = 125/432 (28%), Gaps = 187/432 (43%)
Query: 6 INKYFPPNNNIERKEIAD---KLIKNISIVDKTMDVLPLYHQVRELTQNKASTEQV---- 58
+ YF E +++ L+ ++ + + L EL + E+V
Sbjct: 166 TDDYFE-----ELRDLYQTYHVLVG--DLIKFSAETL------SELIRTTLDAEKVFTQG 212
Query: 59 IDI------STKVKDVA--VDVAVSMIPIYGTYREFKKGNYGWGIVGAISDAALLIPVVG 110
++I + D + + +S P+ G +I +
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISC-PLIG-----------------------VIQLAH 248
Query: 111 YGARAAINL------VRGGSIALKAGTAG---TMIAAKEACTIAQAT-----EKTAK--L 154
Y A L +R LK G G ++ A IA+ + + +
Sbjct: 249 Y-VVTAKLLGFTPGELRS---YLK-GATGHSQGLVTA---VAIAETDSWESFFVSVRKAI 300
Query: 155 TALTKEGITSIRTIEGSSVTIKSESIGTKASISSTNTAEKSAISQKITTNSTTEIGKTT- 213
T L IG + +++ I +S E +
Sbjct: 301 TVLF--------------------FIGVR----CYEAYPNTSLPPSILEDSL-ENNEGVP 335
Query: 214 -----------EVVEESISKINSQLSKS---------TPQGIWTKALTKADPALESIYQR 253
E V++ ++K NS L + L + P +S+Y
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-----NLVVSGPP-QSLY-- 387
Query: 254 GKIFSNTIKNNAFIEKLAHTTKA---IDK-KIPF------IGNQWRDINTA--HSEFKMV 301
G + T++ KA +D+ +IPF N++ + + HS
Sbjct: 388 G--LNLTLRKA----------KAPSGLDQSRIPFSERKLKFSNRFLPV-ASPFHSHL--- 431
Query: 302 PLSDQTLFRDFQGLCGKNIDNQFIL-DLNRASFIFNGKKLA------------RDNSAEA 348
L + I DL + + FN K + R S
Sbjct: 432 -LVPAS---------------DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 349 IQKLMNQFAKNP 360
+++++ + P
Sbjct: 476 SERIVDCIIRLP 487
Score = 51.9 bits (124), Expect = 3e-07
Identities = 87/512 (16%), Positives = 149/512 (29%), Gaps = 165/512 (32%)
Query: 36 MDVLPLYHQVRELTQNKASTEQVIDISTKVKDVAVDVAVSMIPIYGTYR-EFKK--GNYG 92
MD R LT + S E V+ + T + I + +F K
Sbjct: 1 MDAYST----RPLTLSHGSLEHVLLVPT-----------ASFFIASQLQEQFNKILPEPT 45
Query: 93 WGIVG---AISDAALLIPVVGYGARAAINLVRGGSIA-LKAGTAG---TMIAAKEACTIA 145
G + A L+ +GY + G L + + +A
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 146 QATEKTAKLTALTKEGITSIRT------IEGSSVTIKSESIGTKASISSTNTAEKSAI-- 197
+ T + + + I+ + KS S +A A+ AI
Sbjct: 106 AKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFG 161
Query: 198 SQKITTNSTT------EIGKT-TEVVEESISKINSQLSKSTPQGIWTKALTKADPALESI 250
Q N+ ++ +T +V + I LS+ L + E +
Sbjct: 162 GQ---GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE----------LIRTTLDAEKV 208
Query: 251 YQRG-KIFS-----NTIKNNAFIE------------KLAH---TTKAIDKKIPFIGNQWR 289
+ +G I + + ++ +LAH T K + P G + R
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-P--G-ELR 264
Query: 290 DI---NTAHS----------------EF-----KMVPLSDQTLFRDFQGL-CGKNIDNQF 324
T HS F K + LF F G+ C + N
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI----TVLF--FIGVRCYEAYPNTS 318
Query: 325 ILDLNRASFIFNGKK-----LA-RDNSAEAIQKLMNQFAKN---P--KQLQ--LISSYAN 371
+ + N + L+ + + E +Q +N+ N P KQ++ L++ N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKN 376
Query: 372 QSIF-----ADSVVHLM-------------QS-IPEFAKYASKSGSASKFTAKTL--TNG 410
S+ L QS IP F S KF+ + L
Sbjct: 377 ---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-F------SERKLKFSNRFLPVA-- 424
Query: 411 EVAFTAKYTTKVQAVDKIAGKPLKEYGLKISG 442
F + A D I K L + + +
Sbjct: 425 -SPFHSHLLVP--ASDLIN-KDLVKNNVSFNA 452
Score = 31.8 bits (72), Expect = 0.29
Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 74/232 (31%)
Query: 192 AEKSAISQKITTNSTTEIGKT-------TEVVEESISKINSQLSKSTPQGIWTKALTKAD 244
EK ++I N + I +T TE + + I++ ++ + + +G+ + A
Sbjct: 1678 GEKG---KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQ 1733
Query: 245 PALESIYQRGKIFSNTIKNNAFIEKLAHTTKAIDKKIP----FIGNQWRDINTAHS--EF 298
PAL T+ A E L +K + IP F G HS E+
Sbjct: 1734 PAL------------TLMEKAAFEDL--KSKGL---IPADATFAG---------HSLGEY 1767
Query: 299 K-MVPLSD--------QTLFRDFQGLCGKNIDNQFIL---DLNRASF---IFNGKKLARD 343
+ L+D + +F ++G+ Q + +L R+++ N ++A
Sbjct: 1768 AALASLADVMSIESLVEVVF--YRGMT-----MQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 344 NSAEAIQKLMNQFAKNPKQLQLISSY--ANQSIFA-------DSVVHLMQSI 386
S EA+Q ++ + K L I +Y NQ A D+V +++ I
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 59.4 bits (143), Expect = 2e-09
Identities = 101/436 (23%), Positives = 169/436 (38%), Gaps = 106/436 (24%)
Query: 62 STKVKDVAVDVAVS---MIPIYGTYREFKK-GNYGWGIVGAISD-----------AALLI 106
S + D+ V+ +S I I G Y +F++ G++ +G + A S+ A +
Sbjct: 1109 SVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSR 1168
Query: 107 PVV----GY--GARAAINLVRGGSIALKAGTAGTMIAAKEACTIAQATEKTAKLTALTKE 160
P G+ A I ++ +ALK G I A A AT+K + +
Sbjct: 1169 PATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVA----MAATATDKIGRSVPAPGK 1224
Query: 161 GITSIRTIEGSSVTIKSESIGTK----------ASISSTNTAEKSAI---SQKITTNSTT 207
GI + SSV S ++ K A I E A+ +++I +
Sbjct: 1225 GILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQN 1284
Query: 208 E--IGKTTEVVEESISKINSQLSKSTPQGIWTKALTKADPALESIYQRGKI--FSNTIKN 263
E + +T E+ E+ SQL + Q W K DP + + RG + + TI +
Sbjct: 1285 EFLLERTREIHNEA----ESQLRAAQQQ--WGNDFYKRDPRIAPL--RGALATYGLTIDD 1336
Query: 264 NAFIEKLAHTTKAIDKKIPFIGNQWRDINTAHSEFKMVPLSDQT----LFRDF-----QG 314
+TKA DK N+ IN K + S+ +F+ F +G
Sbjct: 1337 LGVASFHGTSTKANDK------NESATINEM---MKHLGRSEGNPVIGVFQKFLTGHPKG 1387
Query: 315 LCGKNIDNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQF--AKNP-KQLQL------ 365
G + +N A I N + + +A+ + K++ QF P K L+
Sbjct: 1388 AAGAWM-------MNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAV 1440
Query: 366 -ISSY-----ANQSIFADSVVH---LMQSIPE--FAKYASKSGSASKFTAKTLTNGEV-- 412
I+S+ Q+I VVH L +I E + +Y +K + K K NG +
Sbjct: 1441 SITSFGFGQKGGQAI----VVHPDYLYGAITEDRYNEYVAKVSAREKSAYKFFHNGMIYN 1496
Query: 413 -AFTAK----YTTKVQ 423
F +K YT +++
Sbjct: 1497 KLFVSKEHAPYTDELE 1512
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.46
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 321 DNQFILDLNRASFIFNGKKLARDNSAE--AIQKLM 353
+ Q + L +AS KL D+SA AI+ M
Sbjct: 18 EKQALKKL-QASL-----KLYADDSAPALAIKATM 46
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, ATP-binding, cytoplasm, hydrolase,
membrane; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 28.5 bits (63), Expect = 3.2
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 22/170 (12%)
Query: 205 STTEIGKTTEVVEESISKINSQLSKSTPQGI-WTKALTKADPALESIYQRGKIFSNTIKN 263
S + GKT +S++++ + K PQ I + A ++ + + GK +K
Sbjct: 165 SQSGTGKTAAFALTMLSRVDASVPK--PQAICLAPSRELARQIMDVVTEMGKY--TEVKT 220
Query: 264 NAFIEKLAHTTKAIDKKIPFIGN--------QWRDINTAHSEFKMVPLSDQTLFRDFQGL 315
I+ ID +I IG + R ++ + K+ L + D QGL
Sbjct: 221 AFGIKDSVPKGAKIDAQI-VIGTPGTVMDLMKRRQLDA--RDIKVFVLDEADNMLDQQGL 277
Query: 316 CGKNIDNQFILDLNRASFIFNGKKLARDNSAEAIQKLMNQFAKNPKQLQL 365
+++ + +L N +F+ +E ++K +FA N +++L
Sbjct: 278 GDQSMRIKHLLPRNTQIVLFSA------TFSERVEKYAERFAPNANEIRL 321
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA
replication, RTH, RAD27, DNA repair; 2.00A
{Methanococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB:
1a77_A
Length = 326
Score = 27.5 bits (60), Expect = 6.8
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 7 NKYFPPNNNIERKEIADKLIKNISIVDKTMDVLPLYHQVRELTQNKASTEQVIDISTKVK 66
Y P + A +L+++ D + Y +++ + + T+ +S K+
Sbjct: 223 TDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEYYDEIKRIFKEPKVTDN-YSLSLKLP 281
Query: 67 DV 68
D
Sbjct: 282 DK 283
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.313 0.128 0.345
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,454,936
Number of extensions: 151915
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 15
Length of query: 459
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 363
Effective length of database: 3,365,806
Effective search space: 1221787578
Effective search space used: 1221787578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.3 bits)