HHsearch alignment for GI: 254780450 and conserved domain: COG0642
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=100.00 E-value=1.6e-30 Score=233.11 Aligned_cols=214 Identities=37% Similarity=0.474 Sum_probs=166.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CEEEEEHH
Q ss_conf 4687630342566415899999999998507998478888999999988887643004542120058-----43585346
Q gi|254780450|r 419 AVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM-----RLTVLNLT 493 (803)
Q Consensus 419 a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~-----~~~~~~l~ 493 (803)
T Consensus 114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG--LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLA 191 (336)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 999999999888589799999999997414--652599999999999999999999999999764457442234645599
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 78999999998750356816999814897226998716999999998742276520678857999998504210122455
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
T Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~---~~~i~i~~~~~---------- 256 (336)
T COG0642 192 ELLEEVVRLLAPLAQ-EKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP---GGEITISVRQD---------- 256 (336)
T ss_pred HHHHHHHHHHHHHHH-HCCEEEEEECC-CCEEEEECHHHHHHHHHHHHHHHHHHCC---CCEEEEEEEEC----------
T ss_conf 999999999998766-34848998237-6607860788999999999998998668---98599999963----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 66788978999999788668844542023222210135776530388999998516754999961889429999943757
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
T Consensus 257 -----~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 257 -----DEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred -----CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCC
T ss_conf -----877999998078997988999881886347999898863299999999987998999507999779999984776
Q ss_pred C
Q ss_conf 6
Q gi|254780450|r 654 Q 654 (803)
Q Consensus 654 ~ 654 (803)
T Consensus 332 ~ 332 (336)
T COG0642 332 A 332 (336)
T ss_pred C
T ss_conf 5