HHsearch alignment for GI: 254780450 and conserved domain: COG2202
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.50 E-value=0.00015 Score=49.98 Aligned_cols=227 Identities=12% Similarity=0.118 Sum_probs=122.9
Q ss_pred EEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEE
Q ss_conf 99929996897646798642999678045632188808820489999998620026714888999980489799999955
Q gi|254780450|r 174 MSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVH 253 (803)
Q Consensus 174 ~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~ 253 (803)
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (232)
T COG2202 3 LVLDRDGRIIYANEAAEELLGYSAEELLG----LLLALHPEDRDRLRELLRRLLAGEELLSEELRLVRKDGEERWVELSA 78 (232)
T ss_pred EEECCCCCEEEECHHHHHHHCCCHHHHHC----CHHCCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCEEEEEEEE
T ss_conf 47716664244415568875334465531----02101045677888999997630000001023541367447887410
Q ss_pred EEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCC
Q ss_conf 67653888554799999860789999999999999999998346750999850206998315544444548846617986
Q gi|254780450|r 254 HILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSND 333 (803)
Q Consensus 254 ~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~ 333 (803)
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~-g~~~~~~~~~~ 156 (232)
T COG2202 79 APLRDGEGRVLGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELL-GYSPEEELGRG 156 (232)
T ss_pred EEEECCCCHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHH-CCCHHHHHCCC
T ss_conf 0111233035555301-115778889999875799999999568967999909998999758999986-97989982776
Q ss_pred HHHHCCCCCCCC-HHHHHHHHHHHCCCCCCCCEEEECCCCEE-EEEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 666101111220-24666655541123345404887388506-899998730456677613899999850232112
Q gi|254780450|r 334 IFSIVHKNEKRK-IIAALYDANDQKSDISPIDSPHPQDENRY-FRFYISATLDRSTEAPEEQAILYTVEITEQKAL 407 (803)
Q Consensus 334 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~ 407 (803)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~ 231 (232)
T COG2202 157 LSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKDGERVRWILSRISP-VRDDGEIVGVVGIARDITERKQA 231 (232)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEEEECC-CCCCCCEEEEEEEEECHHHHHHH
T ss_conf 0654034630466789999975245764058999994389799999987313-24688577899998734689974