HHsearch alignment for GI: 254780450 and conserved domain: COG3275
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=99.07 E-value=3.6e-08 Score=75.53 Aligned_cols=157 Identities=25% Similarity=0.321 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--CCCCEEEEEHHHHHHHHHHHH--HHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHH
Q ss_conf 99988887643004542120--058435853467899999999--87503568169998148972269987169999999
Q gi|254780450|r 463 KHNANRAAILVRQLLAFSRK--QTMRLTVLNLTEVIGNLRMMI--QKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLV 538 (803)
Q Consensus 463 ~~~~~r~~~li~~lLd~sr~--~~~~~~~~~l~~~i~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~ 538 (803)
T Consensus 388 R~npdkAreLil~LS~yfR~NL~~~~~~~v~L~kEl~~v~AYl~IEkARF-~~rL~v~i~id~~l~~~~i-P~f---ilQ 462 (557)
T COG3275 388 RRNPDKARELILYLSTYFRYNLENNTQEIVTLSKELEHVNAYLSIEKARF-GDRLDVVIDIDEELRQVQI-PSF---ILQ 462 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHCCC-CHH---HHH
T ss_conf 17827999999999999998734787158655999999999998998644-8844799946877753368-616---677
Q ss_pred HHHHHHH-HHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9874227-652067-88579999985042101224556678897899999978866884454202322221013577653
Q gi|254780450|r 539 NLCVNAH-HAIMLK-ESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTG 616 (803)
Q Consensus 539 NLl~NA~-~A~~~~-~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtG 616 (803)
T Consensus 463 PLVENAIKHG~~~~~~~g~V~I~V~~~d~---------------~l~i~VeDng~li~p~~------------~--~g~g 513 (557)
T COG3275 463 PLVENAIKHGISQLKDTGRVTISVEKEDA---------------DLRIEVEDNGGLIQPDE------------E--DGTG 513 (557)
T ss_pred HHHHHHHHHCCCCHHCCCCEEEEEEEECC---------------EEEEEEECCCCCCCCCC------------C--CCCC
T ss_conf 88888887536444208817999998088---------------38999941887769977------------8--8987
Q ss_pred CHHHHHHHHHHCCCC---EEEEEECCCCCEEEEEEECCCC
Q ss_conf 038899999851675---4999961889429999943757
Q gi|254780450|r 617 LGLSVVYGIIRQSGG---YILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 617 LGL~i~~~iv~~~gG---~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
T Consensus 514 iGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 514 IGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCC
T ss_conf 1788999999986482103137861677868999944765