HHsearch alignment for GI: 254780450 and conserved domain: COG3275

>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=99.07  E-value=3.6e-08  Score=75.53  Aligned_cols=157  Identities=25%  Similarity=0.321  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--CCCCEEEEEHHHHHHHHHHHH--HHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHH
Q ss_conf             99988887643004542120--058435853467899999999--87503568169998148972269987169999999
Q gi|254780450|r  463 KHNANRAAILVRQLLAFSRK--QTMRLTVLNLTEVIGNLRMMI--QKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLV  538 (803)
Q Consensus       463 ~~~~~r~~~li~~lLd~sr~--~~~~~~~~~l~~~i~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~  538 (803)
T Consensus       388 R~npdkAreLil~LS~yfR~NL~~~~~~~v~L~kEl~~v~AYl~IEkARF-~~rL~v~i~id~~l~~~~i-P~f---ilQ  462 (557)
T COG3275         388 RRNPDKARELILYLSTYFRYNLENNTQEIVTLSKELEHVNAYLSIEKARF-GDRLDVVIDIDEELRQVQI-PSF---ILQ  462 (557)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHCCC-CHH---HHH
T ss_conf             17827999999999999998734787158655999999999998998644-8844799946877753368-616---677


Q ss_pred             HHHHHHH-HHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             9874227-652067-88579999985042101224556678897899999978866884454202322221013577653
Q gi|254780450|r  539 NLCVNAH-HAIMLK-ESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTG  616 (803)
Q Consensus       539 NLl~NA~-~A~~~~-~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtG  616 (803)
T Consensus       463 PLVENAIKHG~~~~~~~g~V~I~V~~~d~---------------~l~i~VeDng~li~p~~------------~--~g~g  513 (557)
T COG3275         463 PLVENAIKHGISQLKDTGRVTISVEKEDA---------------DLRIEVEDNGGLIQPDE------------E--DGTG  513 (557)
T ss_pred             HHHHHHHHHCCCCHHCCCCEEEEEEEECC---------------EEEEEEECCCCCCCCCC------------C--CCCC
T ss_conf             88888887536444208817999998088---------------38999941887769977------------8--8987


Q ss_pred             CHHHHHHHHHHCCCC---EEEEEECCCCCEEEEEEECCCC
Q ss_conf             038899999851675---4999961889429999943757
Q gi|254780450|r  617 LGLSVVYGIIRQSGG---YILPESEVGKGTIFRIFLPRYV  653 (803)
Q Consensus       617 LGL~i~~~iv~~~gG---~i~v~S~~g~Gt~F~i~lP~~~  653 (803)
T Consensus       514 iGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~  553 (557)
T COG3275         514 IGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR  553 (557)
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCC
T ss_conf             1788999999986482103137861677868999944765