HHsearch alignment for GI: 254780450 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.71 E-value=7.5e-16 Score=129.67 Aligned_cols=118 Identities=27% Similarity=0.452 Sum_probs=103.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 569997698899999999999889899998998999899986599954899858788988899999999868--998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTY--PSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~--~~~~ii 759 (803)
T Consensus 133 ~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii 210 (435)
T COG3706 133 KKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIPII 210 (435)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 5089974807799999999875363366515989999997468--98589995578766789999997244444566389
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 990678589987676057980750797999999999998513
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
T Consensus 211 ~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~ 252 (435)
T COG3706 211 LLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR 252 (435)
T ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 995266347899999768851673477879999999999985