HHsearch alignment for GI: 254780450 and conserved domain: COG3852
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].
Probab=97.03 E-value=0.016 Score=35.70 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=59.6
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCH-HHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 89999998524980999959993898106688670999567315611-00027876167899999998324323203898
Q gi|254780450|r 26 IPLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLE-SLLSRNQEASEALYRLINSLRLKSEGSEEFRL 104 (803)
Q Consensus 26 ~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~ 104 (803)
T Consensus 6 ~~~~~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~gs~ll~---ll~q~~~~~~-~~~~~~v 81 (363)
T COG3852 6 EPLAGAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPFGSLLLS---LLDQVLERGQ-PVTEYEV 81 (363)
T ss_pred CCCCHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHH---HHHHHHHHCC-CCCCCEE
T ss_conf 66417687455785699827782896088899999977888824877887177728899---9989998358-8510102
Q ss_pred EECCEEECCCCCEEEEEEEEEEEEE
Q ss_conf 6010000489867999999999982
Q gi|254780450|r 105 MQSLNNYSQNSEPHWYRLKARVLPI 129 (803)
Q Consensus 105 ~~~~~~~~~~g~~~w~~i~~~~~~~ 129 (803)
T Consensus 82 ~l~-----~~g~~~~v~~~v~~v~~ 101 (363)
T COG3852 82 TLV-----ILGRSHIVDLTVAPVPE 101 (363)
T ss_pred EEE-----ECCCCCEEEEEEEECCC
T ss_conf 442-----07865237899862268