HHsearch alignment for GI: 254780450 and conserved domain: COG3947

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].

Probab=99.68  E-value=4.5e-16  Score=131.24  Aligned_cols=112  Identities=25%  Similarity=0.423  Sum_probs=99.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r  683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS  762 (803)
Q Consensus       683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t  762 (803)
T Consensus         2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIs   79 (361)
T COG3947           2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFIS   79 (361)
T ss_pred             CEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             279984638999999999986110210068878899999843--887799985237860878999998753148689996


Q ss_pred             CCCHHHHHH-HHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             678589987-6760579807507979999999999985
Q gi|254780450|r  763 GYAEDAFSK-NLPKDAKFSFLSKPFSLKQLATSVHELL  799 (803)
Q Consensus       763 ~~~~~~~~~-~~~~~~~~~~l~KP~~~~~L~~~i~~~L  799 (803)
T Consensus        80 sh~eya~dsf~~n~---~dYl~KPvt~ekLnraIdr~~  114 (361)
T COG3947          80 SHAEYADDSFGMNL---DDYLPKPVTPEKLNRAIDRRL  114 (361)
T ss_pred             CCHHHHHHHCCCCH---HHHCCCCCCHHHHHHHHHHHH
T ss_conf             30565232035566---754168888889999999874