HHsearch alignment for GI: 254780450 and conserved domain: COG4564
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=99.33 E-value=1.7e-09 Score=84.83 Aligned_cols=189 Identities=18% Similarity=0.244 Sum_probs=117.7
Q ss_pred HH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 56-64158999999999985079984788889999999888876430045421200584358534678999999998750
Q gi|254780450|r 429 HD-FNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLI 507 (803)
Q Consensus 429 He-lr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~ 507 (803)
T Consensus 259 HDGIsQ~LVs~k~~lela~~ql~~-p~~-~a~~aieKaa~aL~~Ai~EVRRiS--H~LRP~~LDDLGL~aALe~L~~~f- 333 (459)
T COG4564 259 HDGISQNLVSVKCALELAARQLNP-PKG-GAHPAIEKAADALNGAIKEVRRIS--HDLRPRALDDLGLTAALEALLEDF- 333 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC-CCC-CCCHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_conf 500777779999999999626779-988-875015667899998999999850--235745554430799999999986-
Q ss_pred CCCCCEEEEEECCCCCEE-EEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 356816999814897226-9987169999999987422765206788579999985042101224556678897899999
Q gi|254780450|r 508 SEPPQVKLTVDYERDLWG-VKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEV 586 (803)
Q Consensus 508 ~~~~~i~~~~~~~~~~~~-v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V 586 (803)
T Consensus 334 ~~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltN---IErHa~Atrv~ill~~---------------~~d~vql~v 395 (459)
T COG4564 334 KERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTN---IERHAGATRVTILLQQ---------------MGDMVQLMV 395 (459)
T ss_pred HHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH---HHHHCCCEEEEEEECC---------------CCCCEEEEE
T ss_conf 4366837999705786447827888999999999877---8860687179998615---------------776069998
Q ss_pred EECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 9788668844542023222210135776530388999998516754999961889429999943757
Q gi|254780450|r 587 EDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 587 ~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
T Consensus 396 rDnG~GF~~~~~~----------~--~~~GiGLRNMrERma~~GG~~~v~s~p-~GTel~v~Lp~~~ 449 (459)
T COG4564 396 RDNGVGFSVKEAL----------Q--KRHGIGLRNMRERMAHFGGELEVESSP-QGTELTVLLPLDA 449 (459)
T ss_pred ECCCCCCCCHHHC----------C--CCCCCCCCCHHHHHHHHCCEEEEEECC-CCCEEEEEECCHH
T ss_conf 2389985616531----------6--755645100999999748658997569-8727999814046