HHsearch alignment for GI: 254780450 and conserved domain: COG4999
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms].
Probab=94.06 E-value=0.3 Score=26.75 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=72.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-----CCHHHHHHHHHHHCC
Q ss_conf 875699976988999999999998898999989989998999865999548998587889-----888999999998689
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-----MDGPTLLRELRKTYP 754 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-----m~G~~~~~~ir~~~~ 754 (803)
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~l--p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mt-- 81 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSAL--PPAHYDMMLLGVAVTFRENLTMQHERLAKALSMT-- 81 (140)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCC----CCCC--CHHHHCEEEECCCCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 5664577668608999999998468826884233----1002--7445203465366655688038899999998653--
Q ss_pred CCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf 9829999067858998767605798075079799999999
Q gi|254780450|r 755 SLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATS 794 (803)
Q Consensus 755 ~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~ 794 (803)
T Consensus 82 d~vilalPs~~-qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 82 DFVILALPSHA-QVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred CCEEEECCCHH-HHHHHHHHHCCHHHHHHCCCHHHHHHHH
T ss_conf 13677367288-8759999631428674076506566789