HHsearch alignment for GI: 254780450 and conserved domain: COG5002
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=100.00 E-value=0 Score=356.31 Aligned_cols=345 Identities=22% Similarity=0.338 Sum_probs=263.0
Q ss_pred EEHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHH
Q ss_conf 8607899999-999999999999983467509998502069983155444445488466179866661011112202466
Q gi|254780450|r 271 VSRKNCDSGD-PSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAA 349 (803)
Q Consensus 271 ~Dit~~k~~e-~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 349 (803)
T Consensus 93 n~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L-~~~~E~~~~~~i~elL~i~d~y~~~dL 171 (459)
T COG5002 93 NDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKML-GVSKEDALGRSILELLKIEDTYTFEDL 171 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHH-CCCHHHHHCCCHHHHHCCCCCEEHHHH
T ss_conf 7899999999876788888899899987076576457786899350799984-867787716537888577543028888
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 66555411233454048873885068999987304566776138999998502321122101234444446876303425
Q gi|254780450|r 350 LYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAH 429 (803)
Q Consensus 350 ~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isH 429 (803)
T Consensus 172 ~e~----~-~s~lld~--~~-~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~Er---------RefvanvSH 234 (459)
T COG5002 172 VEK----N-DSLLLDS--SD-EEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERER---------REFVANVSH 234 (459)
T ss_pred HHC----C-CCEEEEE--CC-CCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHH---------HHHHHHCCH
T ss_conf 725----9-8289860--47-88637999988888511466440699873143878889999---------999886140
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHHHHHHHHHHHH
Q ss_conf 6641589999999999850799847--88889999999888876430045421200584----35853467899999999
Q gi|254780450|r 430 DFNNVLTAILLSSDHLLLQSRSSDA--SFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLTEVIGNLRMMI 503 (803)
Q Consensus 430 elr~pL~~I~g~~~ll~~~~~~~~~--~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~~~i~~~~~~~ 503 (803)
T Consensus 235 ElRTPltsmksyLEALe~ga~-~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft~fl~~ii~R~ 313 (459)
T COG5002 235 ELRTPLTSMKSYLEALEEGAW-EDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRF 313 (459)
T ss_pred HHCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 314736789999999746874-4712326899874788999999999998772576325666578887488999999999
Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf 87503568169998148972269987169999999987422765206788579999985042101224556678897899
Q gi|254780450|r 504 QKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVL 583 (803)
Q Consensus 504 ~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~ 583 (803)
T Consensus 314 e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA--~KYsP~Gg~Itv~~~~---------------~~~~v~ 376 (459)
T COG5002 314 EMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNA--LKYSPDGGRITVSVKQ---------------RETWVE 376 (459)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH--HHCCCCCCEEEEEEEE---------------ECCEEE
T ss_conf 99875677889996088886489967068999999998777--5248999739999963---------------075899
Q ss_pred EEEEECCCCCCHHHHHHCCCCCCC-----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 999978866884454202322221-----013577653038899999851675499996188942999994375
Q gi|254780450|r 584 VEVEDTGIGMSPDIMEKIFEPFFT-----TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRY 652 (803)
Q Consensus 584 i~V~D~G~GI~~~~~~~iFepF~t-----tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~ 652 (803)
T Consensus 377 iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~g-GTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~ 449 (459)
T COG5002 377 ISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMG-GTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYS 449 (459)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCC
T ss_conf 9974688899840689999988522366540378-776129999999997098577760458861799995466