HHsearch alignment for GI: 254780450 and conserved domain: PRK03660

>PRK03660 anti-sigma F factor; Provisional.
Probab=99.52  E-value=2.2e-13  Score=112.22  Aligned_cols=102  Identities=25%  Similarity=0.392  Sum_probs=83.0

Q ss_pred             CHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC
Q ss_conf             71699999999874227-65206788579999985042101224556678897899999978866884454202322221
Q gi|254780450|r  529 DLSQFEQVLVNLCVNAH-HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT  607 (803)
Q Consensus       529 D~~~l~qvl~NLl~NA~-~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t  607 (803)
T Consensus        36 ~~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~---------------~~~~l~I~V~D~G~Gid~--~~~~~~P~~t   98 (146)
T PRK03660         36 ELTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEI---------------EDEELEITVRDEGKGIED--VEEARQPLFT   98 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE---------------ECCEEEEEEEECCCCCCC--HHHCCCCCCC
T ss_conf             99999999999999999860367999279999998---------------099999999973789473--7664388776


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf             01357765303889999985167549999618894299999437
Q gi|254780450|r  608 TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR  651 (803)
Q Consensus       608 tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~  651 (803)
T Consensus        99 ~~~~~~~~GlGl~li~~Lm----DeVei~s~~g~GTtV~m~k~l  138 (146)
T PRK03660         99 TKPELERSGMGFTFMESFM----DEVEVESEPGKGTTIRMKKKL  138 (146)
T ss_pred             CCCCCCCCCHHHHHHHHHC----CEEEEEECCCCCEEEEEEEEE
T ss_conf             6876675640589999838----869999559997899999997