HHsearch alignment for GI: 254780450 and conserved domain: PRK03660
>PRK03660 anti-sigma F factor; Provisional.
Probab=99.52 E-value=2.2e-13 Score=112.22 Aligned_cols=102 Identities=25% Similarity=0.392 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC
Q ss_conf 71699999999874227-65206788579999985042101224556678897899999978866884454202322221
Q gi|254780450|r 529 DLSQFEQVLVNLCVNAH-HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT 607 (803)
Q Consensus 529 D~~~l~qvl~NLl~NA~-~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t 607 (803)
T Consensus 36 ~~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~---------------~~~~l~I~V~D~G~Gid~--~~~~~~P~~t 98 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEI---------------EDEELEITVRDEGKGIED--VEEARQPLFT 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE---------------ECCEEEEEEEECCCCCCC--HHHCCCCCCC
T ss_conf 99999999999999999860367999279999998---------------099999999973789473--7664388776
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 01357765303889999985167549999618894299999437
Q gi|254780450|r 608 TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 608 tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
T Consensus 99 ~~~~~~~~GlGl~li~~Lm----DeVei~s~~g~GTtV~m~k~l 138 (146)
T PRK03660 99 TKPELERSGMGFTFMESFM----DEVEVESEPGKGTTIRMKKKL 138 (146)
T ss_pred CCCCCCCCCHHHHHHHHHC----CEEEEEECCCCCEEEEEEEEE
T ss_conf 6876675640589999838----869999559997899999997