HHsearch alignment for GI: 254780450 and conserved domain: PRK09470
>PRK09470 cpxA two-component sensor protein; Provisional.
Probab=100.00 E-value=2.7e-42 Score=316.02 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=166.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEEEHHHH
Q ss_conf 4687630342566415899999999998507998478888999999988887643004542120058---4358534678
Q gi|254780450|r 419 AVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM---RLTVLNLTEV 495 (803)
Q Consensus 419 a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~---~~~~~~l~~~ 495 (803)
T Consensus 242 ~q~~f~advSHELRTPLt~i~~~~~ll~~~~~--~--~~~l~~i~~e~~rl~~li~~lL~lsr~~~~~~~~~e~~~l~~l 317 (461)
T PRK09470 242 SQQRLLSDISHELRTPLTRLQLATALLRRRQG--E--SKELERIETEAQRLDSMINDLLVLSRNQVKNHLVRETIKANSL 317 (461)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--C--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHH
T ss_conf 99999986455532789999999998640447--8--5999999999999999999999997620546555651539999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 99999999875035681699981489722699871699999999874227652067885799999850421012245566
Q gi|254780450|r 496 IGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSD 575 (803)
Q Consensus 496 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~ 575 (803)
T Consensus 318 ~~~v~~~~~~~a-~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~N---Aikys~-~~i~v~~~~------------- 379 (461)
T PRK09470 318 WSEVLEDAAFEA-EQMGKSLTVNQPPGPWPINGNPNALESALENIVRN---ALRYSH-TKIEVGFSV------------- 379 (461)
T ss_pred HHHHHHHHHHHH-HHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHH---HHHHCC-CCEEEEEEE-------------
T ss_conf 999999999999-97597699972787548997899999999999999---997489-958999999-------------
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC----CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 78897899999978866884454202322221013----57765303889999985167549999618894299999437
Q gi|254780450|r 576 LPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKK----VGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 576 ~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~----~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
T Consensus 380 --~~~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~~~~i~LPl 457 (461)
T PRK09470 380 --DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPL 457 (461)
T ss_pred --ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf --999999999977999899999876279722898888999971388999999999829989999779985699999658
Q ss_pred CCC
Q ss_conf 576
Q gi|254780450|r 652 YVQ 654 (803)
Q Consensus 652 ~~~ 654 (803)
T Consensus 458 ~~~ 460 (461)
T PRK09470 458 YKR 460 (461)
T ss_pred CCC
T ss_conf 899