HHsearch alignment for GI: 254780450 and conserved domain: PRK10060
>PRK10060 RNase II stability modulator; Provisional.
Probab=99.53 E-value=3.2e-12 Score=104.03 Aligned_cols=571 Identities=15% Similarity=0.133 Sum_probs=251.1
Q ss_pred CCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEE
Q ss_conf 59619999299968976467986429996780456321888088204899999986200267148889999804897999
Q gi|254780450|r 169 SPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGHGIP 248 (803)
Q Consensus 169 a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 248 (803)
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-----~---~~~~--~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~ 76 (663)
T PRK10060 16 THSPYWRLAEDSNVLELSAT-----E---ETET--NVTV--ALSPEQAARIREL-----TGITSSLMMTLTL--FGSPLS 76 (663)
T ss_pred CCCCCEEECCCCCEEEEECC-----C---CCCC--CCEE--ECCHHHHHHHHHH-----HHEEEEEEEEEEE--CCCEEE
T ss_conf 99970552167771686335-----7---8788--8311--0688899988866-----4100068998775--384026
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHH
Q ss_conf 9995567653888554799999860-789999999999999999998346750999850206998315544444548846
Q gi|254780450|r 249 VKIVHHILASCDGKPGESRTVVVSR-KNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEG 327 (803)
Q Consensus 249 v~~~~~~~~~~~G~~~~~~~~~~Di-t~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~ 327 (803)
T Consensus 77 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~l----Aa~Vfe~a~egI~ItD~~~~I~~vN~af~~iT-Gy~~~ 149 (663)
T PRK10060 77 VHLVGRKINKREWA--GTASAWHDTPSVARDLSHGLSF----AEQVVSEANSVIVILDSRGNIQRFNRLCEEYT-GLKEH 149 (663)
T ss_pred EEEECCEECCCCCC--CCHHHHCCCHHHHHHHHHHHHH----HHHHHHCCCCEEEEECCCCCEEEEHHHHHHHH-CCCHH
T ss_conf 89840130345335--3023203837789999988799----99998545864999979999887867977886-89999
Q ss_pred HHCCCCHHHH-CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCC-CCEEEEEEEEECCCCC
Q ss_conf 6179866661-0111122024666655541123345404887388506899998730456677-6138999998502321
Q gi|254780450|r 328 DGTSNDIFSI-VHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEA-PEEQAILYTVEITEQK 405 (803)
Q Consensus 328 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~i~~~~DITerk 405 (803)
T Consensus 150 eviG~n~~~l~~s~~~~~~~~~~~~~~l~~~~-~w~gE~w~r~k~G~~~~~~~~~~-v~~~~~~~~~~~i~~f~DITe~k 227 (663)
T PRK10060 150 DVIGQSVFKLFMSRREAAASRRNIRGFFRSGN-AYEVERWIKTRKGQRLFLFRNKF-VHSGSGKNEIFLICSGTDITEER 227 (663)
T ss_pred HHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCC-CEEEEEEEEECCCCEEEEEEEEE-EECCCCCEEEEEEEEEEECCHHH
T ss_conf 91899879983575544889999999997498-18988887405896457988787-76078970699999888804899
Q ss_pred CCCCCHHHHH----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCH-HHHHHH-HHHHHHHHHHHH
Q ss_conf 1221012344----------44446876303425664158999999999985079-9847-888899-999998888764
Q gi|254780450|r 406 ALEARMAQTQ----------KLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSR-SSDA-SFADLM-EIKHNANRAAIL 472 (803)
Q Consensus 406 ~~E~~L~qa~----------~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~-~~~~-~~~~l~-~i~~~~~r~~~l 472 (803)
T Consensus 228 ~~ee~l~~lA~~D~LTgLPNR~~~~~rL~~ai~~~~~~~~Av--lfiD--LD~FK~INDt~GH~~GD~lL~~vA~RL~~~ 303 (663)
T PRK10060 228 RAQERLRILANTDSITGLPNRNAIQELIDHAIAQADNNQVGI--VYLD--LDNFKKVNDAYGHMFGDQLLQDVSLAILSC 303 (663)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE--EEEE--CCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999987367742386628999999999997176993899--9997--867683446627088999999999999976
Q ss_pred HHHHHHHHHHCCCCEEEE----EHHHHHHHH-HHHHHHHH----CCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 300454212005843585----346789999-99998750----356816999814897226998716999999998742
Q gi|254780450|r 473 VRQLLAFSRKQTMRLTVL----NLTEVIGNL-RMMIQKLI----SEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVN 543 (803)
Q Consensus 473 i~~lLd~sr~~~~~~~~~----~l~~~i~~~-~~~~~~~~----~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~N 543 (803)
T Consensus 304 lr~~d~vARlGGDEFvvLl~~~~~~~-~~~~a~ril~~l~~P~~i~~~~v~vsaSIGIa~~p--~~~~~----~~~Ll~~ 376 (663)
T PRK10060 304 LEEDQTLARLGGDEFLVLASHTSQAA-LEAMASRILTRLRLPFRIGLIEVYTGCSIGIALSP--EHGDD----SESLIRS 376 (663)
T ss_pred CCCCCEEEECCCCEEEEEECCCCHHH-HHHHHHHHHHHHCCCEEECCEEEEEEEEEEEEECC--CCCCC----HHHHHHH
T ss_conf 89988998548978999977899899-99999999998506879999999998899999807--99999----9999999
Q ss_pred HHHH---HCCCCCCEEEEEEEECCCCCCCCCC-----CCCCCC--------------CCE----EEEEEE--ECCCCCCH
Q ss_conf 2765---2067885799999850421012245-----566788--------------978----999999--78866884
Q gi|254780450|r 544 AHHA---IMLKESGSLTVRTRNIPSTEIHTFN-----YSDLPT--------------KDM----VLVEVE--DTGIGMSP 595 (803)
Q Consensus 544 A~~A---~~~~~~G~v~i~~~~~~~~~~~~~~-----~~~~~~--------------~~~----v~i~V~--D~G~GI~~ 595 (803)
T Consensus 377 AD~Amy~AK~~Grn~~~~f~~~m~~~~~~~~~le~~Lr~Al~~~ef~l~YQPivdl~g~i~G~EALlRW~hp~~G~-I~P 455 (663)
T PRK10060 377 ADTAMYTAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGL-IPP 455 (663)
T ss_pred HHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCC-CCH
T ss_conf 9999999997089981662889999999999999999999976987999864772899889999999887799992-898
Q ss_pred HHHHHCCCCCCCCCCCCCCCCC----HHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4542023222210135776530----388999998516754999961889429999943757664433333322223544
Q gi|254780450|r 596 DIMEKIFEPFFTTKKVGEGTGL----GLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESHYSHDIAIIPQ 671 (803)
Q Consensus 596 ~~~~~iFepF~ttk~~g~GtGL----GL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~ 671 (803)
T Consensus 456 ~~----FIp~------AE~~GLi~~Lg~wVl~~A~~q~~~--w--~~~g~~~~vsVNlS~~ql~~~~f~~~l~~~L~~~~ 521 (663)
T PRK10060 456 LE----FISY------AEESGLIVPLGRWVILDVVRQAAK--W--RDKGINLRVAVNVSARQLADQTIFTALKQVLQELN 521 (663)
T ss_pred HH----HHHH------HHHCCCHHHHHHHHHHHHHHHHHH--H--HHCCCCCEEEEEECHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99----9999------987797899999999999999999--9--86699864899917899488359999999999829
Q ss_pred CCCCCCCC-CCCEEEEECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCCCEEEEECCC-CCC----CHH
Q ss_conf 44533347-875699976988999999999998898999--9899899989998659995489985878-898----889
Q gi|254780450|r 672 EEPADLTG-NSAIVLLVEDEDSVRRGSKRMLETRGYTVH--EAFSGTDALKVMEKLQGRVDIVISDVVM-PEM----DGP 743 (803)
Q Consensus 672 ~~~~~~~~-~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~--~a~~g~eal~~~~~~~~~~dlil~D~~m-p~m----~G~ 743 (803)
T Consensus 522 l~p~~L~lEITEs~l-~~d~~~~~~~l-~~Lr~lGv~iALDDFGTGySSLsyL~~l--Pvd~lKIDrsFV~~i~~d~~~~ 597 (663)
T PRK10060 522 FEYCPIDVELTESCL-IENEELALSVI-QQFSQLGAQVHLDDFGTGYSSLSQLARF--PIDAIKLDQSFVRDIHKQPVSQ 597 (663)
T ss_pred CCCCEEEEEEECCCH-HCCHHHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHC--CCCEEEECHHHHHCCCCCCCHH
T ss_conf 982469999818612-23999999999-9999789989998999973369998428--9998999989971604892279
Q ss_pred HHHHHHHHHCC--CCCEEEEECCCHHHHHHHHHHCCCC---E-EEECCCCHHHHHHHHHHH
Q ss_conf 99999998689--9829999067858998767605798---0-750797999999999998
Q gi|254780450|r 744 TLLRELRKTYP--SLKFIFISGYAEDAFSKNLPKDAKF---S-FLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 744 ~~~~~ir~~~~--~~~ii~~t~~~~~~~~~~~~~~~~~---~-~l~KP~~~~~L~~~i~~~ 798 (803)
T Consensus 598 aIV~aIi~LA~~Lgl~vVA-EGVEt~eQ~~~L~~lGcd~~QGy~fsrPmPa~ef~~wL~~~ 657 (663)
T PRK10060 598 SLVRAIVAVAQALNLQVIA-EGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRY 657 (663)
T ss_pred HHHHHHHHHHHHCCCEEEE-ECCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999986998999-13864999999997599998267536089999999999974