HHsearch alignment for GI: 254780450 and conserved domain: PRK10549
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional.
Probab=100.00 E-value=1.7e-44 Score=331.63 Aligned_cols=215 Identities=18% Similarity=0.257 Sum_probs=175.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHHH
Q ss_conf 4687630342566415899999999998507998478888999999988887643004542120058----435853467
Q gi|254780450|r 419 AVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLTE 494 (803)
Q Consensus 419 a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~~ 494 (803)
T Consensus 240 ~rr~f~a~iSHELRTPLt~i~g~le~l~d~~--~~~~~e~l~~i~~e~~rl~~Lv~dLl~ls~~~~~~~~~~~~~vdl~~ 317 (467)
T PRK10549 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV--RKFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYQKTPVDLVP 317 (467)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 9999999888875158999999999987165--54579999999999999999999999998754567544673333899
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCC
Q ss_conf 899999999875035681699981489722699871699999999874227652067-8857999998504210122455
Q gi|254780450|r 495 VIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 495 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
T Consensus 318 ll~~~~~~~~~~~~-~~~i~l~~~~~~~~-~v~~D~~~L~qvl~NLl~NA---ikyt~~~g~I~I~~~~----------- 381 (467)
T PRK10549 318 LLEVAGGAFRERFA-SRGLTLQFSLPDSA-TVFGDPDRLMQLFNNLLENS---LRYTDSGGSLHISAEQ----------- 381 (467)
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEECCCCC-EEEECHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE-----------
T ss_conf 99999999999998-45958999759884-69977999999999999999---9848999879999999-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC----CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 66788978999999788668844542023222210135----77653038899999851675499996188942999994
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKV----GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~----g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
T Consensus 382 ----~~~~v~i~V~D~G~GI~~e~l~~IFe~Fyr~d~sr~r~~gGsGLGLaIvk~Iv~~HgG~I~v~s~~~~G~~f~i~L 457 (467)
T PRK10549 382 ----HDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVEL 457 (467)
T ss_pred ----ECCEEEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEE
T ss_conf ----7999999999818887989999866898738888889999612899999999998399899996799857999995
Q ss_pred CCCCCC
Q ss_conf 375766
Q gi|254780450|r 650 PRYVQE 655 (803)
Q Consensus 650 P~~~~~ 655 (803)
T Consensus 458 Pl~~~~ 463 (467)
T PRK10549 458 PLERDL 463 (467)
T ss_pred ECCCCC
T ss_conf 279998