HHsearch alignment for GI: 254780450 and conserved domain: PRK10604
>PRK10604 sensor protein RstB; Provisional.
Probab=100.00 E-value=3.8e-42 Score=315.00 Aligned_cols=209 Identities=24% Similarity=0.314 Sum_probs=165.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHH
Q ss_conf 44687630342566415899999999998507998478888999999988887643004542120058----43585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~ 493 (803)
T Consensus 210 ~~~r~f~a~vSHELRTPLt~i~~~lell-~~--~~~~e~---~~l~~~i~~l~~lv~~lL~larl~~~~~~l~~~~~dl~ 283 (433)
T PRK10604 210 ASKKQLIDGIAHELRTPLVRLRYRLEMS-DN--LSAAES---QALNRDIGQLEALIEELLTYARLDRPQNELHLSEPDLP 283 (433)
T ss_pred HHHHHHHHHCCHHHCCHHHHHHHHHHHH-CC--CCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 9999998740244316899999999970-49--985789---99999999999999999999763689787877023699
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 78999999998750356816999814897226998716999999998742276520678857999998504210122455
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
T Consensus 284 ~~i~~~~~~~~~~~-~~~~i~l~~~~--~~~~~~~D~~~l~~~l~NLl~N---A~kys-~~~v~v~~~~----------- 345 (433)
T PRK10604 284 AWLSTHLADIQAVT-PEKTVRLKTPH--QGDYGALDMRLMERVLDNLLNN---ALRYS-HSTVETSLLL----------- 345 (433)
T ss_pred HHHHHHHHHHHHHC-CCCCEEEECCC--CCCEEEECHHHHHHHHHHHHHH---HHHCC-CCCEEEEEEE-----------
T ss_conf 99999999999765-59967997179--8866987899999999999999---98718-9978999999-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC---C--CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 6678897899999978866884454202322221---0--1357765303889999985167549999618894299999
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT---T--KKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t---t--k~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
T Consensus 346 ----~~~~~~i~V~D~G~GI~~e~~~~IFepFyR~d~sr~~~~-gG~GLGLaIvk~Iv~~hgG~i~v~s~~~gGa~f~i~ 420 (433)
T PRK10604 346 ----DGDQATLIVEDDGPGIAPEERERIFEPFVRLDPSRDRAT-GGCGLGLAIVHSIALAMGGSVNCDTSELGGARFSFS 420 (433)
T ss_pred ----ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEE
T ss_conf ----999999999977878898999986579452888889999-961388999999999819989999669984799999
Q ss_pred ECCCCCC
Q ss_conf 4375766
Q gi|254780450|r 649 LPRYVQE 655 (803)
Q Consensus 649 lP~~~~~ 655 (803)
T Consensus 421 LP~~~~~ 427 (433)
T PRK10604 421 WPVWHNI 427 (433)
T ss_pred ECCCCCC
T ss_conf 7799999