HHsearch alignment for GI: 254780450 and conserved domain: PRK10815
>PRK10815 sensor protein PhoQ; Provisional.
Probab=100.00 E-value=1.5e-38 Score=289.67 Aligned_cols=213 Identities=18% Similarity=0.227 Sum_probs=162.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHH
Q ss_conf 446876303425664158999999999985079984788889999999888876430045421200584----3585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~ 493 (803)
T Consensus 264 ~rqr~F~adaSHELRTPLa~l~~~le~L~~~-~~~~~~~~--~~~le~i~Rl~~li~~lL~~a~~~~~~~~~~~e~~~l~ 340 (484)
T PRK10815 264 DKYRTTLTDLTHSLKTPLAVLQSTLRSLRTE-KMSVSDAE--PVMLEQISRISQQIGYYLHRASMRGEGTLLSRELHPVA 340 (484)
T ss_pred HHHHHHHHCCCHHHCCHHHHHHHHHHHHHCC-CCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 9999998544364345699999999997469-98878999--99999999999999999999870389863025556699
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 78999999998750356816999814897226998716999999998742276520678857999998504210122455
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
T Consensus 341 ~ll~~l~~~l~~~~~-~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldN---Aikys~~-~v~I~~~~----------- 403 (484)
T PRK10815 341 PLLDNLTSALNKVYQ-RKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDN---ACKYCLE-FVEISARQ----------- 403 (484)
T ss_pred HHHHHHHHHHHHHHH-HCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHH---HHHHCCC-CEEEEEEE-----------
T ss_conf 999999999999999-64977999648760-7955789999999999999---9972888-67999999-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 66788978999999788668844542023222210135776530388999998516754999961889429999943757
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
T Consensus 404 ----~~~~~~I~V~D~GpGIp~e~~~~IFeRF~R~d~~r~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG~~f~I~F~~~~ 479 (484)
T PRK10815 404 ----TDEHLHIVVEDDGPGIPESKRELIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVASESPLGGARMEVIFGRQH 479 (484)
T ss_pred ----ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCC
T ss_conf ----6999999999739999989998624688779999998576799999999988998999956999248999973877
Q ss_pred C
Q ss_conf 6
Q gi|254780450|r 654 Q 654 (803)
Q Consensus 654 ~ 654 (803)
T Consensus 480 ~ 480 (484)
T PRK10815 480 S 480 (484)
T ss_pred C
T ss_conf 8