HHsearch alignment for GI: 254780450 and conserved domain: PRK10816
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=99.88 E-value=2.8e-21 Score=167.96 Aligned_cols=117 Identities=24% Similarity=0.345 Sum_probs=106.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~--~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lt 79 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLT 79 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEE
T ss_conf 899995989999999999997899999989999999999757--998999979998988640012011048987689994
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
T Consensus 80 a~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr 118 (223)
T PRK10816 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 445677899999869988641897778999999999665