HHsearch alignment for GI: 254780450 and conserved domain: PRK10935
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional.
Probab=99.76 E-value=8.3e-16 Score=129.36 Aligned_cols=188 Identities=18% Similarity=0.229 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHHHHH----HHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
Q ss_conf 034256641589999999----99985079---98478888999999988887643004542120058435853467899
Q gi|254780450|r 425 GGIAHDFNNVLTAILLSS----DHLLLQSR---SSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIG 497 (803)
Q Consensus 425 a~isHelr~pL~~I~g~~----~ll~~~~~---~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~ 497 (803)
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fRl~---l~~~~L~~AL~ 442 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFRLT---IQEANLGSALE 442 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHH
T ss_conf 899998441266578999999999998742256538899999999999999999999999983226---77568799999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 99999987503568169998148972269987169---999999987422765206788579999985042101224556
Q gi|254780450|r 498 NLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQ---FEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYS 574 (803)
Q Consensus 498 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~---l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~ 574 (803)
T Consensus 443 ~~~~~~~~q--~~~~i~l~~~l~----~~~l~~~~~i~llrIvqEALtN---~~KHA~A~~V~V~~~~~----------- 502 (568)
T PRK10935 443 EMLDQLRNQ--TSAKITLDCRLP----SQALDAQQQVHLLQIIREATLN---AIKHANASEIAVSCVTN----------- 502 (568)
T ss_pred HHHHHHHHH--CCCEEEEECCCC----CCCCCHHHHHHHHHHHHHHHHH---HHHHCCCCEEEEEEEEC-----------
T ss_conf 999999751--194699970688----7778888999999999999999---99808998799999974-----------
Q ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 678897899999978866884454202322221013577653038899999851675499996188942999994375
Q gi|254780450|r 575 DLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRY 652 (803)
Q Consensus 575 ~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~ 652 (803)
T Consensus 503 ---~~~~v~l~V~DnG~Gf~~~~------------~--~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~~ 563 (568)
T PRK10935 503 ---PDGEVTVSIRDDGVGIGELK------------E--PEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPSQ 563 (568)
T ss_pred ---CCCEEEEEEEECCCCCCCCC------------C--CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCC
T ss_conf ---89879999977994789878------------8--8998575999999996699899997799966999985898