HHsearch alignment for GI: 254780450 and conserved domain: PRK10955

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=99.87  E-value=2.1e-21  Score=168.79  Aligned_cols=114  Identities=26%  Similarity=0.445  Sum_probs=101.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r  683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS  762 (803)
Q Consensus       683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t  762 (803)
T Consensus         3 kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~--~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PII~lt   78 (232)
T PRK10955          3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-D--SIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIMLT   78 (232)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-C--CCCEEEEECCCCCCCCCCCCCEEECC-CCCCEEEEE
T ss_conf             8999969899999999999888999999899999999964-8--98999991899988867230124407-888789980


Q ss_pred             CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf             67858998767605798075079799999999999851
Q gi|254780450|r  763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ  800 (803)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~  800 (803)
T Consensus        79 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allr  116 (232)
T PRK10955         79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR  116 (232)
T ss_pred             CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf             55676889999976975763389998999999999976