HHsearch alignment for GI: 254780450 and conserved domain: PRK10955
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=99.87 E-value=2.1e-21 Score=168.79 Aligned_cols=114 Identities=26% Similarity=0.445 Sum_probs=101.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
T Consensus 3 kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~--~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PII~lt 78 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-D--SIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIMLT 78 (232)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-C--CCCEEEEECCCCCCCCCCCCCEEECC-CCCCEEEEE
T ss_conf 8999969899999999999888999999899999999964-8--98999991899988867230124407-888789980
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 67858998767605798075079799999999999851
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allr 116 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 55676889999976975763389998999999999976