HHsearch alignment for GI: 254780450 and conserved domain: PRK11083
>PRK11083 DNA-binding response regulator CreB; Provisional.
Probab=99.90 E-value=2.3e-22 Score=175.56 Aligned_cols=117 Identities=30% Similarity=0.442 Sum_probs=105.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 56999769889999999999988989999899899989998659995489985878898889999999986899829999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
T Consensus 4 ~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII~l 81 (229)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLRAFHPALPVIFL 81 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999996999999999999998899999989999999999718--99899973889998768899999970899729998
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 067858998767605798075079799999999999851
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
T Consensus 82 ta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lr 120 (229)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (229)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 367898999999975998773087428999999999997