HHsearch alignment for GI: 254780450 and conserved domain: PRK11086
>PRK11086 sensory histidine kinase DcuS; Provisional.
Probab=100.00 E-value=8.4e-45 Score=333.45 Aligned_cols=310 Identities=22% Similarity=0.250 Sum_probs=213.1
Q ss_pred HHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCC-CHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998346750999850206998315544444548-84661798666610111122024666655541123345404887
Q gi|254780450|r 290 FNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNC-TEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHP 368 (803)
Q Consensus 290 l~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 368 (803)
T Consensus 223 r~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~~~~~~~~~~-------l~~vl~~~~~~~d~e~~-- 293 (541)
T PRK11086 223 RQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTDVHSWSPVSR-------LKEVLRTGTPRRDEEIN-- 293 (541)
T ss_pred HHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHHHCCCHH-------HHHHHHCCCCCCEEEEE--
T ss_conf 999985300169997589879998499998743358874312551777275455-------99998448853107999--
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 38850689999873045667761389999985023211221012344444468763034256641589999999999850
Q gi|254780450|r 369 QDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQ 448 (803)
Q Consensus 369 ~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~ 448 (803)
T Consensus 294 -~~~~~l--~~~~~pi~-~~g~~~G~V~~~rD~TE~~~L~~~L~~v---~~~~e~Lra~sHE~~n~L~~I~Gll~l~~-- 364 (541)
T PRK11086 294 -INGRLL--LTNTVPVR-VNGEIIGAISTFRDKTEVRQLAQRLDGV---VNYADALRAQSHEFMNKLHVILGLLHLKS-- 364 (541)
T ss_pred -ECCEEE--EEEEEEEE-ECCEEEEEEEEEECHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCH--
T ss_conf -899899--99977765-4890689999984427899999999999---99999987611666405799988886430--
Q ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE
Q ss_conf 799847888899999998-8887643004542120058435853467899999999875035681699981489722699
Q gi|254780450|r 449 SRSSDASFADLMEIKHNA-NRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVK 527 (803)
Q Consensus 449 ~~~~~~~~~~l~~i~~~~-~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~ 527 (803)
T Consensus 365 ---~d~~~~~i~~~~~~~~~~~~~l~~~i~~----------p-~la~~L---lgk~~~a~--E~gi~L~i~~~~~l~~~- 424 (541)
T PRK11086 365 ---YDQLEDYILKTANNYQEEIGSLLGKIKS----------P-VIAGFL---LGKISRAR--ELGITLIISEDSQLPDS- 424 (541)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHCCC----------H-HHHHHH---HHHHHHHH--HCCCEEEEECCCCCCCC-
T ss_conf ---8999999999999999999999986116----------8-889999---98899999--66985997067767788-
Q ss_pred ECH---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCC
Q ss_conf 871---69999999987422765206788579999985042101224556678897899999978866884454202322
Q gi|254780450|r 528 TDL---SQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEP 604 (803)
Q Consensus 528 ~D~---~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFep 604 (803)
T Consensus 425 ~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~---------------~~~~l~i~V~D~G~GI~~e~~~~IFer 489 (541)
T PRK11086 425 DDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHY---------------RHGWLHIEVSDDGPGIAPEEIEAIFDK 489 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE---------------CCCEEEEEEEECCCCCCHHHHHHHCCC
T ss_conf 86466657999999999999997316899679999998---------------899899999977988597799887179
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 22101357765303889999985167549999618894299999437576
Q gi|254780450|r 605 FFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQ 654 (803)
Q Consensus 605 F~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~ 654 (803)
T Consensus 490 g~StK~--~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~~~ 537 (541)
T PRK11086 490 GYSTKG--SNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWDGK 537 (541)
T ss_pred CCCCCC--CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 874189--991103999999999859989999669993799999606876