HHsearch alignment for GI: 254780450 and conserved domain: PRK11100
>PRK11100 sensory histidine kinase CreC; Provisional.
Probab=100.00 E-value=1.4e-45 Score=341.12 Aligned_cols=213 Identities=24% Similarity=0.326 Sum_probs=177.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHH
Q ss_conf 44687630342566415899999999998507998478888999999988887643004542120058----43585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~ 493 (803)
T Consensus 254 ~~~e~fva~vSHELRTPLt~I~g~~ElL~~~-~~~e~~~~~l~~I~~e~~RL~~LV~~LL~larle~~~~~~~~~~vdl~ 332 (475)
T PRK11100 254 AYVEQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRQRFTGNILAQSARLQQLIDRLLELARLEQRQELEVLEPVALA 332 (475)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHH
T ss_conf 9999999854086511799999999997389-998999999999999999999999999999875158876755487599
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCCC
Q ss_conf 789999999987503568169998148972269987169999999987422765206-7885799999850421012245
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIML-KESGSLTVRTRNIPSTEIHTFN 572 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~-~~~G~v~i~~~~~~~~~~~~~~ 572 (803)
T Consensus 333 ~ll~~~~~~~~~~~~-~~~i~l~~~~~-~-~~v~~D~~~L~qvl~NLl~NA---ikys~~~g~I~I~~~~---------- 396 (475)
T PRK11100 333 ALLEELVEAREAQAA-AKGITLRLRPD-D-AAVLGDPFLLRQALGNLLDNA---IDFTPEGGTITLSAER---------- 396 (475)
T ss_pred HHHHHHHHHHHHHHH-HCCEEEEEECC-C-CEEEECHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE----------
T ss_conf 999999999999998-68929999578-7-669708999999999999999---9738999779999999----------
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC---CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 56678897899999978866884454202322221013---577653038899999851675499996188942999994
Q gi|254780450|r 573 YSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKK---VGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 573 ~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~---~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
T Consensus 397 -----~~~~~~i~V~D~G~GIp~e~l~~IFerFys~~r~~~~~~GsGLGLsIvk~Iv~~HgG~I~v~s~~~~Gt~f~i~L 471 (475)
T PRK11100 397 -----DGEQVALSVEDSGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTL 471 (475)
T ss_pred -----ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEC
T ss_conf -----699999999984888788999886167803777999988630799999999998599899996699807999993
Q ss_pred CCC
Q ss_conf 375
Q gi|254780450|r 650 PRY 652 (803)
Q Consensus 650 P~~ 652 (803)
T Consensus 472 P~~ 474 (475)
T PRK11100 472 PRH 474 (475)
T ss_pred CCC
T ss_conf 899