HHsearch alignment for GI: 254780450 and conserved domain: PRK11644
>PRK11644 sensory histidine kinase UhpB; Provisional.
Probab=99.62 E-value=1.7e-13 Score=113.07 Aligned_cols=206 Identities=18% Similarity=0.245 Sum_probs=130.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0232112210123444444687630342566415899999999998507998478-888999999988887643004542
Q gi|254780450|r 401 ITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDAS-FADLMEIKHNANRAAILVRQLLAF 479 (803)
Q Consensus 401 ITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~-~~~l~~i~~~~~r~~~li~~lLd~ 479 (803)
T Consensus 286 L~~nr~LsrqLI~aQE~E-Rr~IARELHDEiGQ~LTAIr~~a~~i~-r~~~~~~~~~~~a~~I~~l~~~i~~~vR~ll-- 361 (497)
T PRK11644 286 LARNRHLAERLLETEESV-RRDVARELHDEIGQTITAIRTQASIVK-RLAADNASVKQSGQLIEQLSLGVYDAVRRLL-- 361 (497)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999999999999976999-999999700034059999999999986-3269976689999999999999999999999--
Q ss_pred HHHCCCCEEEEE---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE-ECHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 120058435853---467899999999875035681699981489722699-8716999999998742276520678857
Q gi|254780450|r 480 SRKQTMRLTVLN---LTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVK-TDLSQFEQVLVNLCVNAHHAIMLKESGS 555 (803)
Q Consensus 480 sr~~~~~~~~~~---l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~-~D~~~l~qvl~NLl~NA~~A~~~~~~G~ 555 (803)
T Consensus 362 ---~~LRP~~LDdLGL~~AL~~Lv~e~~~-~~~gi~~~l~~~~~~~--~L~~~~~itlYRIvQEaLTN---i~KHA~A~~ 432 (497)
T PRK11644 362 ---GRLRPRQLDDLTLEQAIRSLMRELEL-EDRGIVSHLDWQIDES--ALSETQRVTLFRVCQEGLNN---IVKHADASA 432 (497)
T ss_pred ---HHCCCCCHHHCCHHHHHHHHHHHHHH-HCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHHHHH---HHHCCCCCE
T ss_conf ---86090311124899999999998765-2579559998268766--79824688999999999999---997378876
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 99999850421012245566788978999999788668844542023222210135776530388999998516754999
Q gi|254780450|r 556 LTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILP 635 (803)
Q Consensus 556 v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v 635 (803)
T Consensus 433 V~I~L~~---------------~~~~l~L~I~DDG~Gf~~~~---------------~~~G~GL~GMrERV~aLGG~l~I 482 (497)
T PRK11644 433 VTIQGWQ---------------QDERLMLVIEDNGSGLPPGS---------------GQQGFGLRGMQERVSALGGTLTI 482 (497)
T ss_pred EEEEEEE---------------CCCEEEEEEEECCCCCCCCC---------------CCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 9999997---------------69989999988998989898---------------99998926799999974997999
Q ss_pred EECCCCCEEEEEEECC
Q ss_conf 9618894299999437
Q gi|254780450|r 636 ESEVGKGTIFRIFLPR 651 (803)
Q Consensus 636 ~S~~g~Gt~F~i~lP~ 651 (803)
T Consensus 483 ~S~--~GT~I~V~LP~ 496 (497)
T PRK11644 483 SCT--HGTRLSVTLPQ 496 (497)
T ss_pred EEC--CCCEEEEECCC
T ss_conf 828--99779995899