HHsearch alignment for GI: 254780450 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.36 E-value=2.9e-12 Score=104.36 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=108.6
Q ss_pred HHHHHHHHHHCCCEEEEEC---CCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999852596199992---9996897646798642999678045632188808820489999998620026714888
Q gi|254780450|r 159 LQNAIDYLDHSPVGFMSAD---HQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLD 235 (803)
Q Consensus 159 ~~~~~~~le~a~~gi~~~D---~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 235 (803)
T Consensus 157 ~~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~lq~-~~~~~e~~~~~~~ai~~~~~~~ve 235 (674)
T PRK13558 157 RRLKEQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQG-PKTNEDRVAEFWTAITEDHDTQVV 235 (674)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCC-CCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 9988756640572599846888887438860123653189817864974012106-888805799999997558863345
Q ss_pred EEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999804897999999556765388855479999986078999999999999999999834
Q gi|254780450|r 236 LDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNN 296 (803)
Q Consensus 236 ~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~ 296 (803)
T Consensus 236 ~r~~r~-dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~~L~R 295 (674)
T PRK13558 236 LRNYRR-DGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDRLLDR 295 (674)
T ss_pred EEEECC-CCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 333146-883787412455210578858999862144778899999999868899999999