HHsearch alignment for GI: 254780450 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.36  E-value=2.9e-12  Score=104.36  Aligned_cols=136  Identities=13%  Similarity=0.110  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHCCCEEEEEC---CCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             9999999852596199992---9996897646798642999678045632188808820489999998620026714888
Q gi|254780450|r  159 LQNAIDYLDHSPVGFMSAD---HQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLD  235 (803)
Q Consensus       159 ~~~~~~~le~a~~gi~~~D---~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  235 (803)
T Consensus       157 ~~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~lq~-~~~~~e~~~~~~~ai~~~~~~~ve  235 (674)
T PRK13558        157 RRLKEQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQG-PKTNEDRVAEFWTAITEDHDTQVV  235 (674)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCC-CCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             9988756640572599846888887438860123653189817864974012106-888805799999997558863345


Q ss_pred             EEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999804897999999556765388855479999986078999999999999999999834
Q gi|254780450|r  236 LDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNN  296 (803)
Q Consensus       236 ~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~  296 (803)
T Consensus       236 ~r~~r~-dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~~L~R  295 (674)
T PRK13558        236 LRNYRR-DGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDRLLDR  295 (674)
T ss_pred             EEEECC-CCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             333146-883787412455210578858999862144778899999999868899999999