HHsearch alignment for GI: 254780450 and conserved domain: TIGR00585
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=98.17 E-value=5.4e-06 Score=60.15 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 99999998742276520678857999998504210122455667889789999997886688445420232222101
Q gi|254780450|r 533 FEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK 609 (803)
Q Consensus 533 l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk 609 (803)
T Consensus 23 p~~vVKELvENSLDA----GAt~I~v~~~~----------------gG~~~I~V~DNG~Gi~~~d~~~~~~~haTSK 79 (367)
T TIGR00585 23 PASVVKELVENSLDA----GATKIEVEIEE----------------GGLKLIEVSDNGSGIDKEDLELACERHATSK 79 (367)
T ss_pred HHHHHHHHHHHHHCC----CCCEEEEEEEE----------------CCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf 799999988731214----88589999962----------------6535899997785677777998612357763