HHsearch alignment for GI: 254780450 and conserved domain: TIGR01925

>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.33  E-value=1.2e-06  Score=64.91  Aligned_cols=97  Identities=26%  Similarity=0.361  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf             699999999874227-6520678857999998504210122455667889789999997886688445420232222101
Q gi|254780450|r  531 SQFEQVLVNLCVNAH-HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK  609 (803)
Q Consensus       531 ~~l~qvl~NLl~NA~-~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk  609 (803)
T Consensus        38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~---------------d~~~~~~v~D~G~GI--~~lE~A~~PLyTsk  100 (137)
T TIGR01925        38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATIE---------------DDEVSITVRDEGIGI--ENLEEAREPLYTSK  100 (137)
T ss_pred             HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEE---------------CCEEEEEEEECCCCH--HHHHHHCCCCCCCC
T ss_conf             5554333223212053145637997789999960---------------548999986467572--33785326645799


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf             357765303889999985167549999618894299999
Q gi|254780450|r  610 KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF  648 (803)
Q Consensus       610 ~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~  648 (803)
T Consensus       101 PeLERSGMGFTvME~----FMD~~~v~S~~~~GT~I~~~  135 (137)
T TIGR01925       101 PELERSGMGFTVMES----FMDDVEVDSEKEKGTKIILK  135 (137)
T ss_pred             CCCCCCCCCEEEECC----CCCCEEEEECCCCCCEEEEE
T ss_conf             872206786012111----24512686238998468875