HHsearch alignment for GI: 254780450 and conserved domain: TIGR02040
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.99 E-value=1.4e-08 Score=78.50 Aligned_cols=165 Identities=14% Similarity=0.185 Sum_probs=68.4
Q ss_pred CHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEE--EECCEEEEEEEEEEEEECCCCCEEEEEEEEEEH----------
Q ss_conf 18880882048999999862002671488899998--048979999995567653888554799999860----------
Q gi|254780450|r 206 SIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRR--IDNGHGIPVKIVHHILASCDGKPGESRTVVVSR---------- 273 (803)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Di---------- 273 (803)
T Consensus 40 ~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~l 119 (453)
T TIGR02040 40 RWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSDLELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRL 119 (453)
T ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 44441357789999999971468888577776654117999724403467616787888873588846524789999999
Q ss_pred -HHHHHHH---HHHHHHHHHHHHHHHCCCCEEEEEE-ECEEEEEECCCCCCCCCCCCH--HHHCCCCHHHHCCCCCCCCH
Q ss_conf -7899999---9999999999999834675099985-020699831554444454884--66179866661011112202
Q gi|254780450|r 274 -KNCDSGD---PSGTIANMRFNRFFNNIPMAIASID-KKGRILRTNAHFLKLFPNCTE--GDGTSNDIFSIVHKNEKRKI 346 (803)
Q Consensus 274 -t~~k~~e---~~l~~se~rl~~i~e~~p~~I~~~d-~~g~i~~~N~a~~~l~~g~~~--~~~~g~~~~~~~~~~~~~~~ 346 (803)
T Consensus 120 v~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~l 199 (453)
T TIGR02040 120 VEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREEL 199 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHHH
T ss_conf 99987888879998667544433541148867998536534778679999985026775012311134314664543689
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 4666655541123345404887388
Q gi|254780450|r 347 IAALYDANDQKSDISPIDSPHPQDE 371 (803)
Q Consensus 347 ~~~~~~~~~~~~~~~~~e~~~~~~~ 371 (803)
T Consensus 200 ~~~l~~~~a-tg~A~~~~i~l~~~~ 223 (453)
T TIGR02040 200 ELLLREVRA-TGKAAEVRILLAESR 223 (453)
T ss_pred HHHHHHHHH-CCCCCCCEEEECCCC
T ss_conf 999986430-157787178745788