HHsearch alignment for GI: 254780450 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.54 E-value=1.2e-13 Score=114.05 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=92.5
Q ss_pred EEEECCCHHHHHHHHHHHH--H-CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCC-CCC----HHHHHHHHHHHCCC
Q ss_conf 9997698899999999999--8-89899998998999899986599954899858788-988----89999999986899
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLE--T-RGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMP-EMD----GPTLLRELRKTYPS 755 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~--~-~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp-~m~----G~~~~~~ir~~~~~ 755 (803)
T Consensus 1 LLiVeDD~glQK----QLkWs~G~~Ye~~~A~DR~sAiA~vRRh--eP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~ 74 (451)
T TIGR02915 1 LLIVEDDLGLQK----QLKWSFGADYEVAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPD 74 (451)
T ss_pred CCEEECCHHHHH----HHHHHCCCCCEEEEECCHHHHHHHHHCC--CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 924536866567----8764157884035534757899986056--9964773675578988745899999999963898
Q ss_pred CCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 829999067858998767605798075079799999999999851
Q gi|254780450|r 756 LKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 756 ~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
T Consensus 75 TKVIViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~ 119 (451)
T TIGR02915 75 TKVIVITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFR 119 (451)
T ss_pred CEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 048998668983889999643751013578757899999999888