HHsearch alignment for GI: 254780450 and conserved domain: TIGR02938

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.79  E-value=2.2e-18  Score=147.44  Aligned_cols=266  Identities=16%  Similarity=0.138  Sum_probs=195.5

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             99999985249809999599938981066886709995673156110002787616789999999832432320389860
Q gi|254780450|r   27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQ  106 (803)
Q Consensus        27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~  106 (803)
T Consensus         4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTPpeVYQaLWg~la~qkPW~------G   77 (496)
T TIGR02938         4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTPPEVYQALWGSLAEQKPWA------G   77 (496)
T ss_pred             HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC------C
T ss_conf             5688866228803643101456999956632155865621112554012685887179999998863058986------5


Q ss_pred             CCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEH
Q ss_conf             10000489867999999999982378806999999978338899999999999999999852596199992999689764
Q gi|254780450|r  107 SLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYIN  186 (803)
Q Consensus       107 ~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N  186 (803)
T Consensus        78 ~LlNRrkDg~lYLAeLtvaPvl-neaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN  156 (496)
T TIGR02938        78 KLLNRRKDGELYLAELTVAPVL-NEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDN  156 (496)
T ss_pred             CEECCCCCCCHHHHHHCCCCHH-CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECC
T ss_conf             1000011653002220202000-146881587325454357889988897646789999878654100056998688167


Q ss_pred             HHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCE-EEEEEEEEEEEECCCCCEEE
Q ss_conf             67986429996780456321888088204899999986200267148889999804897-99999955676538885547
Q gi|254780450|r  187 ATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGH-GIPVKIVHHILASCDGKPGE  265 (803)
Q Consensus       187 ~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~-~~~v~~~~~~~~~~~G~~~~  265 (803)
T Consensus       157 ~~yk~La-~DL~v~e-pa~~~l~lLre~~~e~~~~~~~q~~afsn--~E~rfD~g-gGR~~RWlSc~g~~i~~e~~~ad~  231 (496)
T TIGR02938       157 LEYKKLA-SDLKVEE-PAELLLKLLREELAEDLEELENQEKAFSN--KELRFDRG-GGRSARWLSCAGRVIRIEEDSADS  231 (496)
T ss_pred             HHHHHHH-HHCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCEECC--CEEEEECC-CCCCCCCEEECCCEEEEECCCCCE
T ss_conf             7688787-4214144-17999998508765278652021101015--40354168-878850102023235311364011


Q ss_pred             ---------EEEEEEEHHHHHHHH--------HHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             ---------999998607899999--------999999999999983467509998
Q gi|254780450|r  266 ---------SRTVVVSRKNCDSGD--------PSGTIANMRFNRFFNNIPMAIASI  304 (803)
Q Consensus       266 ---------~~~~~~Dit~~k~~e--------~~l~~se~rl~~i~e~~p~~I~~~  304 (803)
T Consensus       232 fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~rEtl~AAIhrl  287 (496)
T TIGR02938       232 FFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALRETLSAAIHRL  287 (496)
T ss_pred             EECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             56168998305663647888999999999998999989988888766688888885