HHsearch alignment for GI: 254780450 and conserved domain: TIGR02938
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.79 E-value=2.2e-18 Score=147.44 Aligned_cols=266 Identities=16% Similarity=0.138 Sum_probs=195.5
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999985249809999599938981066886709995673156110002787616789999999832432320389860
Q gi|254780450|r 27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQ 106 (803)
Q Consensus 27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 106 (803)
T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTPpeVYQaLWg~la~qkPW~------G 77 (496)
T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTPPEVYQALWGSLAEQKPWA------G 77 (496)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC------C
T ss_conf 5688866228803643101456999956632155865621112554012685887179999998863058986------5
Q ss_pred CCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEH
Q ss_conf 10000489867999999999982378806999999978338899999999999999999852596199992999689764
Q gi|254780450|r 107 SLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYIN 186 (803)
Q Consensus 107 ~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N 186 (803)
T Consensus 78 ~LlNRrkDg~lYLAeLtvaPvl-neaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN 156 (496)
T TIGR02938 78 KLLNRRKDGELYLAELTVAPVL-NEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDN 156 (496)
T ss_pred CEECCCCCCCHHHHHHCCCCHH-CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECC
T ss_conf 1000011653002220202000-146881587325454357889988897646789999878654100056998688167
Q ss_pred HHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCE-EEEEEEEEEEEECCCCCEEE
Q ss_conf 67986429996780456321888088204899999986200267148889999804897-99999955676538885547
Q gi|254780450|r 187 ATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGH-GIPVKIVHHILASCDGKPGE 265 (803)
Q Consensus 187 ~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~-~~~v~~~~~~~~~~~G~~~~ 265 (803)
T Consensus 157 ~~yk~La-~DL~v~e-pa~~~l~lLre~~~e~~~~~~~q~~afsn--~E~rfD~g-gGR~~RWlSc~g~~i~~e~~~ad~ 231 (496)
T TIGR02938 157 LEYKKLA-SDLKVEE-PAELLLKLLREELAEDLEELENQEKAFSN--KELRFDRG-GGRSARWLSCAGRVIRIEEDSADS 231 (496)
T ss_pred HHHHHHH-HHCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCEECC--CEEEEECC-CCCCCCCEEECCCEEEEECCCCCE
T ss_conf 7688787-4214144-17999998508765278652021101015--40354168-878850102023235311364011
Q ss_pred ---------EEEEEEEHHHHHHHH--------HHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf ---------999998607899999--------999999999999983467509998
Q gi|254780450|r 266 ---------SRTVVVSRKNCDSGD--------PSGTIANMRFNRFFNNIPMAIASI 304 (803)
Q Consensus 266 ---------~~~~~~Dit~~k~~e--------~~l~~se~rl~~i~e~~p~~I~~~ 304 (803)
T Consensus 232 fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~rEtl~AAIhrl 287 (496)
T TIGR02938 232 FFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALRETLSAAIHRL 287 (496)
T ss_pred EECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56168998305663647888999999999998999989988888766688888885